IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2428	 54.96	0	2585328..2585891	-	187	56752436	-	syc2427_c	-	hypothetical protein
2429	 50.23	-1	2586086..2586961	-	291	56752437	-	syc2428_c	-	potassium channel protein
2430	 55.25	0	2587019..2587666	-	215	56752438	-	syc2429_c	-	nitroreductase
2431	 55.62	0	2587765..2588262	+	165	56752439	-	syc2430_d	-	hypothetical protein
2432	 54.32	0	2588969..2591131	+	720	56752440	katG	syc2431_d	-	catalase/peroxidase
2433	 49.74	-1	2591818..2592201	+	127	56752441	-	syc2432_d	-	hypothetical protein
2434	 54.64	0	2592314..2593510	+	398	56752442	gldA	syc2433_d	-	glycerol dehydrogenase
2435	 55.58	0	2593617..2595257	-	546	56752443	-	syc2434_c	-	Fe-S oxidoreductase
2436	 57.16	0	2595254..2596000	-	248	56752444	rffM	syc2435_c	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
2437	 56.14	0	2596103..2599342	+	1079	56752445	-	syc2436_d	-	phosphorylase kinase alpha subunit
2438	 55.37	0	2599545..2600261	-	238	56752446	-	syc2437_c	-	rubrerythrin
2439	 56.44	0	2600411..2600860	+	149	56752447	-	syc2438_d	-	transcription regulator
2440	 57.11	0	2600863..2601783	-	306	56752448	-	syc2439_c	-	hypothetical protein
2441	 51.31	-1	2601979..2602701	-	240	56752449	-	syc2440_c	-	hypothetical protein
2442	 57.93	0	2602974..2603717	-	247	56752450	rnc	syc2441_c	-	ribonuclease III
2443	 56.54	0	2604232..2605080	-	282	56752451	-	syc2442_c	-	hypothetical protein
2444	 51.74	-1	2605176..2606696	-	506	56752452	-	syc2443_c	-	hypothetical protein
2445	 55.28	0	2606799..2607869	-	356	56752453	-	syc2444_c	-	hypothetical protein
2446	 54.35	0	2608635..2609186	-	183	56752454	-	syc2445_c	-	hypothetical protein
2447	 56.23	0	2609273..2609914	-	213	56752455	-	syc2446_c	-	ABC transporter ATP-binding protein
2448	 58.43	0	2610098..2610364	-	88	56752456	-	syc2447_c	-	hypothetical protein
2449	 57.32	0	2610565..2611623	+	352	56752457	psbDII	syc2448_d	-	photosystem II reaction center D2 protein
2450	 53.92	0	2612036..2612443	+	135	56752458	phhB	syc2449_d	-	pterin-4-alpha-carbinolamine dehydratase
2451	 52.98	0	2612515..2614224	+	569	56752459	somB	syc2450_d	-	porin
2452	 52.05	0	2614449..2616056	+	535	56752460	somA	syc2451_d	-	porin
2453	 48.68	-1	2616218..2616673	+	151	56752461	-	syc2452_d	-	hypothetical protein
2454	 55.52	0	2616888..2617892	+	334	56752462	cysM	syc2453_d	-	cysteine synthase
2455	 54.84	0	2617979..2618587	+	202	56752463	-	syc2454_d	-	hypothetical protein
2456	 46.82	-2	2618706..2619365	-	219	56752464	-	syc2455_c	-	putative monovalent cation/H+ antiporter subunit B
2457	 43.30	-2	2619362..2619943	-	193	56752465	-	syc2456_c	-	hypothetical protein
2458	 44.90	-2	2619936..2620229	-	97	56752466	-	syc2457_c	-	hypothetical protein
2459	 41.86	-2	2620226..2620483	-	85	56752467	-	syc2458_c	-	hypothetical protein
2460	 43.17	-2	2620863..2622305	-	480	56752468	ndhD2	syc2459_c	-	putative monovalent cation/H+ antiporter subunit D
2461	 43.45	-2	2622302..2622637	-	111	56752469	-	syc2460_c	-	putative monovalent cation/H+ antiporter subunit C
2462	 54.55	0	2623057..2624178	-	373	56752470	sbtA	syc2461_c	-	sodium-dependent bicarbonate transporter
2463	 46.98	-2	2624941..2625255	+	104	56752471	-	syc2462_d	-	hypothetical protein
2464	 59.06	0	2625366..2627561	-	731	56752472	-	syc2463_c	-	hypothetical protein
2465	 56.85	0	2627639..2628076	-	145	56752473	cytM	syc2464_c	-	cytochrome CytM
2466	 58.33	0	2628261..2628308	+	15	56752474	petG	syc2465_d	-	cytochrome b6-f complex subunit V (PetG)
2467	 59.46	0	2628419..2628973	-	184	56752475	-	syc2466_c	-	hypothetical protein
2468	 57.03	0	2628970..2629623	-	217	56752476	hisH	syc2467_c	-	imidazole glycerol phosphate synthase subunit HisH
2469	 58.81	0	2629830..2631395	+	521	56752477	-	syc2468_d	-	hypothetical protein
2470	 56.64	0	2631674..2632102	-	142	56752478	-	syc2469_c	-	hypothetical protein
2471	 58.25	0	2632099..2633607	-	502	56752479	murE	syc2470_c	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2472	 56.18	0	2633632..2633898	-	88	56752480	-	syc2471_c	-	hypothetical protein
2473	 59.44	0	2633889..2634137	-	82	56752481	-	syc2472_c	-	hypothetical protein
2474	 58.29	0	2634211..2634819	+	202	56752482	rpsD	syc2473_d	-	30S ribosomal protein S4
2475	 53.36	0	2635770..2637122	+	450	56752483	cmpA	syc2474_d	-	substrate-binding protein
2476	 51.02	-1	2637178..2638014	+	278	56752484	cmpB	syc2475_d	-	permease protein
2477	 56.33	0	2638043..2640034	+	663	56752485	cmpC	syc2476_d	-	ATP-binding protein
2478	 54.12	0	2640059..2640895	+	278	56752486	cmpD	syc2477_d	-	ATP-binding protein
2479	 59.82	0	2641163..2641732	+	189	56752487	-	syc2478_d	-	hypothetical protein
2480	 58.21	0	2641739..2642578	+	279	56752488	mazG	syc2479_d	-	nucleoside triphosphate pyrophosphohydrolase
2481	 56.16	0	2642607..2643320	-	237	56752489	-	syc2480_c	-	hypothetical protein
2482	 59.66	0	2643348..2643875	-	175	56752490	-	syc2481_c	-	hypothetical protein
2483	 56.40	0	2643872..2644777	-	301	56752491	argB	syc2482_c	-	acetylglutamate kinase
2484	 57.22	0	2644770..2645330	-	186	56752492	-	syc2483_c	-	hypothetical protein
2485	 54.00	0	2645856..2646155	-	99	56752493	petF	syc2484_c	-	ferredoxin petF-like protein
2486	 58.44	0	2646404..2647303	-	299	56752494	prmA	syc2485_c	-	ribosomal protein L11 methyltransferase
2487	 58.87	0	2647303..2648943	-	546	56752495	serA	syc2486_c	-	D-3-phosphoglycerate dehydrogenase
2488	 59.16	0	2648955..2649527	+	190	56752496	-	syc2487_d	-	hypothetical protein
2489	 56.92	0	2649528..2650307	+	259	56752497	-	syc2488_d	-	hypothetical protein
2490	 49.46	-1	2650555..2651943	+	462	56752498	-	syc2489_d	-	hypothetical protein
2491	 56.86	0	2652064..2653215	-	383	56752499	leuB	syc2490_c	-	3-isopropylmalate dehydrogenase
2492	 52.76	0	2653322..2653738	-	138	56752500	-	syc2491_c	-	hypothetical protein
2493	 59.14	0	2654621..2655523	-	300	56752501	lipA	syc2492_c	-	lipoyl synthase
2494	 57.99	0	2655709..2656434	-	241	56752502	-	syc2493_c	-	hypothetical protein
2495	 57.73	0	2656554..2657627	+	357	56752503	trmU	syc2494_d	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2496	 56.03	0	2657624..2658403	-	259	56752504	sigF1	syc2495_c	-	RNA polymerase sigma factor SigF
2497	 56.39	0	2658692..2659129	-	145	56752505	-	syc2496_c	-	hypothetical protein
2498	 57.26	0	2659169..2660614	-	481	56752506	zds	syc2497_c	-	zeta-carotene desaturase
2499	 57.82	0	2660757..2661965	+	402	56752507	dxr	syc2498_d	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2500	 59.33	0	2661975..2662574	+	199	56752508	-	syc2499_d	-	pseudouridine synthase
2501	 58.13	0	2662544..2663515	+	323	56752509	-	syc2500_d	-	protein phosphatase
2502	 61.88	+1	2663549..2664196	-	215	56752510	-	syc2501_c	-	phosphoglycerate mutase
2503	 60.12	+1	2664168..2665541	-	457	56752511	-	syc2502_c	-	two-component sensor histidine kinase
2504	 55.89	0	2665852..2668152	+	766	56752512	pcrA	syc2503_d	-	ATP-dependent helicase PcrA
2505	 60.15	+1	2668201..2669505	-	434	56752513	hisD	syc2504_c	-	histidinol dehydrogenase
2506	 56.90	0	2669711..2670007	+	98	56752514	rpsT	syc2505_d	-	30S ribosomal protein S20
2507	 59.02	0	2670074..2670871	+	265	56752515	tatD	syc2506_d	-	Mg-dependent DNase
2508	 57.49	0	2670954..2674256	+	1100	56752516	rpoB	syc2507_d	-	DNA-directed RNA polymerase subunit beta
2509	 55.31	0	2674375..2676249	+	624	56752517	rpoC1	syc2508_d	-	DNA-directed RNA polymerase subunit gamma
2510	 57.39	0	2676319..2680275	+	1318	56752518	rpoC2	syc2509_d	-	DNA-directed RNA polymerase subunit beta'
2511	 54.92	0	2680632..2681738	+	368	56752519	typA	syc2510_d	-	N-terminus of GTP-binding protein TypA-like protein
2512	 56.05	0	2681747..2682424	+	225	56752520	typA	syc2511_d	-	C-terminus of GTP-binding protein TypA-like protein
2513	 56.06	0	2682511..2683302	+	263	56752521	-	syc2512_d	-	hypothetical protein
2514	 57.25	0	2683467..2685983	+	838	56752522	-	syc2513_d	-	nitrogen assimilation regulatory protein
2515	 56.97	0	2686041..2686370	-	109	56752523	ycf49	syc2514_c	-	hypothetical protein
2516	 58.73	0	2686428..2687447	+	339	56752524	-	syc2515_d	-	hypothetical protein
2517	 50.23	-1	2687507..2687932	-	141	56752525	-	syc2516_c	-	molybdenum-pterin binding protein
2518	 49.26	-1	2688023..2688838	+	271	56752526	modA	syc2517_d	-	molybdate-binding periplasmic protein
2519	 50.75	-1	2688835..2689500	+	221	56752527	-	syc2518_d	-	ATP-binding protein of molybdate ABC transporter
2520	 53.54	0	2689556..2690317	+	253	56752528	sdhB	syc2519_d	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2521	 44.02	-2	2690440..2692647	+	735	56752529	-	syc2520_d	-	hypothetical protein
2522	 55.56	0	2692684..2693169	+	161	56752530	rbcX	syc2521_d	-	Rubisco chaperonin
2523	 57.71	0	2693159..2693839	+	226	56752531	-	syc2522_d	-	amidotransferase
2524	 40.44	-2	2694226..2694591	+	121	56752532	-	syc2523_d	-	hypothetical protein
2525	 44.55	-2	2694741..2695043	-	100	56752533	-	syc2524_c	-	hypothetical protein
2526	 44.30	-2	2695081..2695791	-	236	56752534	-	syc2525_c	-	hypothetical protein
2527	 55.48	0	2695881..138	-	170	56752535	isiB	syc0001_c	-	flavodoxin FldA
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.