IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2378	 57.13	0	2533818..2534834	-	338	56752386	metX	syc2377_c	-	hypothetical protein
2379	 57.84	0	2534831..2535691	-	286	56752387	-	syc2378_c	-	hydrocarbon oxygenase MocD
2380	 60.38	+1	2535832..2536197	-	121	56752388	-	syc2379_c	-	hypothetical protein
2381	 61.26	+1	2536203..2536775	-	190	56752389	-	syc2380_c	-	hypothetical protein
2382	 51.95	0	2536772..2537002	-	76	56752390	rpoZ	syc2381_c	-	DNA-directed RNA polymerase subunit omega
2383	 57.91	0	2537161..2538702	+	513	56752391	-	syc2382_d	-	hypothetical protein
2384	 53.70	0	2538824..2540851	-	675	56752392	opdA	syc2383_c	-	oligopeptidase A
2385	 56.94	0	2540986..2541417	-	143	56752393	-	syc2384_c	-	hypothetical protein
2386	 55.95	0	2541624..2543816	-	730	56752394	-	syc2385_c	-	hypothetical protein
2387	 55.83	0	2543985..2544104	-	39	56752395	psbI	syc2386_c	-	photosystem II reaction center I protein I
2388	 59.26	0	2544217..2545026	-	269	56752396	-	syc2387_c	-	hypothetical protein
2389	 56.82	0	2545063..2548110	+	1015	56752397	ams1	syc2388_d	-	alpha-mannosidase
2390	 56.61	0	2548561..2549097	-	178	56752398	-	syc2389_c	-	hypothetical protein
2391	 53.54	0	2549201..2550145	+	314	56752399	wcaG	syc2390_d	-	GDP-fucose synthetase NAD dependent epimerase/dehydratase
2392	 59.43	0	2550192..2551586	+	464	56752400	-	syc2391_d	-	multi-drug efflux transporter
2393	 55.85	0	2551622..2551963	-	113	56752401	-	syc2392_c	-	hypothetical protein
2394	 52.84	0	2552158..2552439	+	93	56752402	-	syc2393_d	-	hypothetical protein
2395	 58.93	0	2552589..2553338	+	249	56752403	-	syc2394_d	-	hypothetical protein
2396	 47.85	-2	2553413..2554411	-	332	56752404	-	syc2395_c	-	hypothetical protein
2397	 58.48	0	2554544..2557120	-	858	56752405	gyrA	syc2396_c	-	DNA gyrase A subunit
2398	 53.98	0	2557231..2557632	+	133	56752406	divK	syc2397_d	-	two-component system response regulator
2399	 47.26	-2	2557721..2558632	+	303	56752407	-	syc2398_d	-	mrr restriction system protein
2400	 61.41	+1	2558735..2559286	-	183	56752408	-	syc2399_c	-	hypothetical protein
2401	 60.00	0	2559295..2559894	-	199	56752409	-	syc2400_c	-	hypothetical protein
2402	 56.59	0	2560173..2561135	-	320	56752410	-	syc2401_c	-	putative thiosulfate sulfurtransferase
2403	 57.96	0	2561277..2562137	-	286	56752411	cysW	syc2402_c	-	sulfate transport system permease protein
2404	 57.79	0	2562137..2563003	-	288	56752412	cysU	syc2403_c	-	sulfate transport system permease protein
2405	 51.66	-1	2563003..2564028	-	341	56752413	sbpA	syc2404_c	-	sulfate transport system substrate-binding protein
2406	 52.73	0	2564188..2565048	-	286	56752414	cysW	syc2405_c	-	sulfate transport system permease protein
2407	 61.19	+1	2565094..2565714	-	206	56752415	cysR	syc2406_c	-	transcriptional regulator CRP family protein
2408	 54.07	0	2565742..2565987	-	81	56752416	-	syc2407_c	-	hypothetical protein
2409	 57.59	0	2566011..2566847	-	278	56752417	cysT	syc2408_c	-	sulfate transport system permease protein
2410	 54.13	0	2566922..2567974	-	350	56752418	sbpA	syc2409_c	-	sulfate transport system substrate-binding protein
2411	 54.30	0	2568174..2569208	+	344	56752419	cysA	syc2410_d	-	sulfate transport system ATP-binding protein
2412	 54.28	0	2569460..2569798	-	112	56752420	psbW	syc2411_c	-	photosystem II reaction center protein Psb28
2413	 56.17	0	2569897..2570439	+	180	56752421	-	syc2412_d	-	hypothetical protein
2414	 60.02	0	2570453..2571550	+	365	56752422	-	syc2413_d	-	hypothetical protein
2415	 59.17	0	2571581..2572234	+	217	56752423	-	syc2414_d	-	hypothetical protein
2416	 55.97	0	2572284..2572769	+	161	56752424	-	syc2415_d	-	hypothetical protein
2417	 59.94	0	2572884..2573195	+	103	56752425	-	syc2416_d	-	hypothetical protein
2418	 59.16	0	2573196..2573861	+	221	56752426	-	syc2417_d	-	hypothetical protein
2419	 60.06	+1	2573817..2574542	-	241	56752427	vanY	syc2418_c	-	putative carboxypeptidase
2420	 59.48	0	2574603..2575214	-	203	56752428	kdpC	syc2419_c	-	potassium-transporting ATPase C chain
2421	 57.77	0	2575365..2577455	-	696	56752429	kdpB	syc2420_c	-	potassium-transporting ATPase subunit B
2422	 59.37	0	2577498..2579168	-	556	56752430	kdpA	syc2421_c	-	potassium-transporting ATPase subunit A
2423	 59.20	0	2579694..2581085	-	463	56752431	murD	syc2422_c	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2424	 56.31	0	2581191..2581895	+	234	56752432	-	syc2423_d	-	hypothetical protein
2425	 58.60	0	2581946..2583061	-	371	56752433	-	syc2424_c	-	oxidoreductase
2426	 56.04	0	2583236..2583649	+	137	56752434	-	syc2425_d	-	hypothetical protein
2427	 57.48	0	2583803..2585239	+	478	56752435	cysS	syc2426_d	-	cysteinyl-tRNA synthetase
2428	 54.96	0	2585328..2585891	-	187	56752436	-	syc2427_c	-	hypothetical protein
2429	 50.23	-1	2586086..2586961	-	291	56752437	-	syc2428_c	-	potassium channel protein
2430	 55.25	0	2587019..2587666	-	215	56752438	-	syc2429_c	-	nitroreductase
2431	 55.62	0	2587765..2588262	+	165	56752439	-	syc2430_d	-	hypothetical protein
2432	 54.32	0	2588969..2591131	+	720	56752440	katG	syc2431_d	-	catalase/peroxidase
2433	 49.74	-1	2591818..2592201	+	127	56752441	-	syc2432_d	-	hypothetical protein
2434	 54.64	0	2592314..2593510	+	398	56752442	gldA	syc2433_d	-	glycerol dehydrogenase
2435	 55.58	0	2593617..2595257	-	546	56752443	-	syc2434_c	-	Fe-S oxidoreductase
2436	 57.16	0	2595254..2596000	-	248	56752444	rffM	syc2435_c	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
2437	 56.14	0	2596103..2599342	+	1079	56752445	-	syc2436_d	-	phosphorylase kinase alpha subunit
2438	 55.37	0	2599545..2600261	-	238	56752446	-	syc2437_c	-	rubrerythrin
2439	 56.44	0	2600411..2600860	+	149	56752447	-	syc2438_d	-	transcription regulator
2440	 57.11	0	2600863..2601783	-	306	56752448	-	syc2439_c	-	hypothetical protein
2441	 51.31	-1	2601979..2602701	-	240	56752449	-	syc2440_c	-	hypothetical protein
2442	 57.93	0	2602974..2603717	-	247	56752450	rnc	syc2441_c	-	ribonuclease III
2443	 56.54	0	2604232..2605080	-	282	56752451	-	syc2442_c	-	hypothetical protein
2444	 51.74	-1	2605176..2606696	-	506	56752452	-	syc2443_c	-	hypothetical protein
2445	 55.28	0	2606799..2607869	-	356	56752453	-	syc2444_c	-	hypothetical protein
2446	 54.35	0	2608635..2609186	-	183	56752454	-	syc2445_c	-	hypothetical protein
2447	 56.23	0	2609273..2609914	-	213	56752455	-	syc2446_c	-	ABC transporter ATP-binding protein
2448	 58.43	0	2610098..2610364	-	88	56752456	-	syc2447_c	-	hypothetical protein
2449	 57.32	0	2610565..2611623	+	352	56752457	psbDII	syc2448_d	-	photosystem II reaction center D2 protein
2450	 53.92	0	2612036..2612443	+	135	56752458	phhB	syc2449_d	-	pterin-4-alpha-carbinolamine dehydratase
2451	 52.98	0	2612515..2614224	+	569	56752459	somB	syc2450_d	-	porin
2452	 52.05	0	2614449..2616056	+	535	56752460	somA	syc2451_d	-	porin
2453	 48.68	-1	2616218..2616673	+	151	56752461	-	syc2452_d	-	hypothetical protein
2454	 55.52	0	2616888..2617892	+	334	56752462	cysM	syc2453_d	-	cysteine synthase
2455	 54.84	0	2617979..2618587	+	202	56752463	-	syc2454_d	-	hypothetical protein
2456	 46.82	-2	2618706..2619365	-	219	56752464	-	syc2455_c	-	putative monovalent cation/H+ antiporter subunit B
2457	 43.30	-2	2619362..2619943	-	193	56752465	-	syc2456_c	-	hypothetical protein
2458	 44.90	-2	2619936..2620229	-	97	56752466	-	syc2457_c	-	hypothetical protein
2459	 41.86	-2	2620226..2620483	-	85	56752467	-	syc2458_c	-	hypothetical protein
2460	 43.17	-2	2620863..2622305	-	480	56752468	ndhD2	syc2459_c	-	putative monovalent cation/H+ antiporter subunit D
2461	 43.45	-2	2622302..2622637	-	111	56752469	-	syc2460_c	-	putative monovalent cation/H+ antiporter subunit C
2462	 54.55	0	2623057..2624178	-	373	56752470	sbtA	syc2461_c	-	sodium-dependent bicarbonate transporter
2463	 46.98	-2	2624941..2625255	+	104	56752471	-	syc2462_d	-	hypothetical protein
2464	 59.06	0	2625366..2627561	-	731	56752472	-	syc2463_c	-	hypothetical protein
2465	 56.85	0	2627639..2628076	-	145	56752473	cytM	syc2464_c	-	cytochrome CytM
2466	 58.33	0	2628261..2628308	+	15	56752474	petG	syc2465_d	-	cytochrome b6-f complex subunit V (PetG)
2467	 59.46	0	2628419..2628973	-	184	56752475	-	syc2466_c	-	hypothetical protein
2468	 57.03	0	2628970..2629623	-	217	56752476	hisH	syc2467_c	-	imidazole glycerol phosphate synthase subunit HisH
2469	 58.81	0	2629830..2631395	+	521	56752477	-	syc2468_d	-	hypothetical protein
2470	 56.64	0	2631674..2632102	-	142	56752478	-	syc2469_c	-	hypothetical protein
2471	 58.25	0	2632099..2633607	-	502	56752479	murE	syc2470_c	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2472	 56.18	0	2633632..2633898	-	88	56752480	-	syc2471_c	-	hypothetical protein
2473	 59.44	0	2633889..2634137	-	82	56752481	-	syc2472_c	-	hypothetical protein
2474	 58.29	0	2634211..2634819	+	202	56752482	rpsD	syc2473_d	-	30S ribosomal protein S4
2475	 53.36	0	2635770..2637122	+	450	56752483	cmpA	syc2474_d	-	substrate-binding protein
2476	 51.02	-1	2637178..2638014	+	278	56752484	cmpB	syc2475_d	-	permease protein
2477	 56.33	0	2638043..2640034	+	663	56752485	cmpC	syc2476_d	-	ATP-binding protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.