IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2339	 61.72	+1	2494696..2495160	+	154	56752347	-	syc2338_d	-	hypothetical protein
2340	 57.10	0	2495280..2496032	+	250	56752348	-	syc2339_d	-	hypothetical protein
2341	 48.53	-1	2496272..2496475	+	67	56752349	-	syc2340_d	-	hypothetical protein
2342	 55.04	0	2496518..2496904	+	128	56752350	ycf35	syc2341_d	-	hypothetical protein
2343	 57.51	0	2496904..2497296	+	130	56752351	-	syc2342_d	-	4Fe-4S ferredoxin
2344	 59.97	0	2497299..2498060	+	253	56752352	-	syc2343_d	-	hypothetical protein
2345	 55.61	0	2498088..2499272	+	394	56752353	-	syc2344_d	-	hypothetical protein
2346	 54.21	0	2499488..2500450	+	320	56752354	rpoD2	syc2345_d	-	group2 RNA polymerase sigma factor RpoD2
2347	 57.17	0	2500750..2501202	+	150	56752355	-	syc2346_d	-	hypothetical protein
2348	 54.01	0	2501217..2501627	-	136	56752356	-	syc2347_c	-	hypothetical protein
2349	 56.29	0	2501774..2502958	-	394	56752357	ndhH	syc2348_c	-	NAD(P)H-quinone oxidoreductase subunit H
2350	 54.80	0	2503217..2504236	-	339	56752358	gap2	syc2349_c	-	glyceraldehyde-3-phosphate dehydrogenase
2351	 57.13	0	2504515..2505951	+	478	56752359	murC	syc2350_d	-	UDP-N-acetylmuramate--L-alanine ligase
2352	 56.40	0	2505962..2506867	+	301	56752360	murB	syc2351_d	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2353	 50.57	-1	2506908..2507081	-	57	56752361	-	syc2352_c	-	mercuric resistance operon regulatory protein
2354	 56.59	0	2507378..2508637	-	419	56752362	nifS	syc2353_c	-	cysteine desulfurase
2355	 59.59	0	2508647..2509975	-	442	56752363	-	syc2354_c	-	hypothetical protein
2356	 55.09	0	2509975..2510760	-	261	56752364	ycf16	syc2355_c	-	ABC transporter ATP-binding protein
2357	 56.46	0	2510806..2512245	-	479	56752365	-	syc2356_c	-	cysteine desulfurase activator complex subunit SufB
2358	 57.02	0	2512293..2512655	-	120	56752366	ftrC	syc2357_c	-	ferredoxin-thioredoxin reductase catalytic chain
2359	 58.45	0	2512831..2513475	+	214	56752367	-	syc2358_d	-	hypothetical protein
2360	 55.23	0	2513472..2513882	+	136	56752368	-	syc2359_d	-	hypothetical protein
2361	 56.38	0	2513879..2514364	+	161	56752369	-	syc2360_d	-	hypothetical protein
2362	 58.50	0	2514410..2514997	-	195	56752370	-	syc2361_c	-	hypothetical protein
2363	 58.46	0	2515045..2516202	-	385	56752371	kdpD	syc2362_c	-	potassium-transporting ATPase D chain
2364	 61.66	+1	2516163..2516681	-	172	56752372	-	syc2363_c	-	hypothetical protein
2365	 56.87	0	2516831..2517412	+	193	56752373	-	syc2364_d	-	hypothetical protein
2366	 52.44	0	2517440..2517931	+	163	56752374	lspA	syc2365_d	-	lipoprotein signal peptidase
2367	 51.24	-1	2517983..2519434	-	483	56752375	-	syc2366_c	-	hypothetical protein
2368	 45.31	-2	2519664..2519972	+	102	56752376	-	syc2367_d	-	hypothetical protein
2369	 58.67	0	2520018..2521568	-	516	56752377	-	syc2368_c	-	carotene isomerase
2370	 54.33	0	2521822..2522907	+	361	56752378	sbpA	syc2369_d	-	sulfate transport system substrate-binding protein
2371	 54.75	0	2523134..2523838	+	234	56752379	-	syc2370_d	-	phycocyanin alpha phycocyanobilin lyase related protein NblB
2372	 53.97	0	2524658..2525098	-	146	56752380	-	syc2371_c	-	hypothetical protein
2373	 57.77	0	2525254..2526681	+	475	56752381	icd	syc2372_d	-	isocitrate dehydrogenase
2374	 59.95	0	2526712..2528022	+	436	56752382	glcE	syc2373_d	-	glycolate oxidase subunit GlcE
2375	 53.21	0	2528019..2529326	+	435	56752383	glcF	syc2374_d	-	glycolate oxidase subunit (Fe-S) protein
2376	 51.36	-1	2529395..2533111	+	1238	56752384	-	syc2375_d	-	hypothetical protein
2377	 58.41	0	2533147..2533800	+	217	56752385	upp	syc2376_d	-	uracil phosphoribosyltransferase
2378	 57.13	0	2533818..2534834	-	338	56752386	metX	syc2377_c	-	hypothetical protein
2379	 57.84	0	2534831..2535691	-	286	56752387	-	syc2378_c	-	hydrocarbon oxygenase MocD
2380	 60.38	+1	2535832..2536197	-	121	56752388	-	syc2379_c	-	hypothetical protein
2381	 61.26	+1	2536203..2536775	-	190	56752389	-	syc2380_c	-	hypothetical protein
2382	 51.95	0	2536772..2537002	-	76	56752390	rpoZ	syc2381_c	-	DNA-directed RNA polymerase subunit omega
2383	 57.91	0	2537161..2538702	+	513	56752391	-	syc2382_d	-	hypothetical protein
2384	 53.70	0	2538824..2540851	-	675	56752392	opdA	syc2383_c	-	oligopeptidase A
2385	 56.94	0	2540986..2541417	-	143	56752393	-	syc2384_c	-	hypothetical protein
2386	 55.95	0	2541624..2543816	-	730	56752394	-	syc2385_c	-	hypothetical protein
2387	 55.83	0	2543985..2544104	-	39	56752395	psbI	syc2386_c	-	photosystem II reaction center I protein I
2388	 59.26	0	2544217..2545026	-	269	56752396	-	syc2387_c	-	hypothetical protein
2389	 56.82	0	2545063..2548110	+	1015	56752397	ams1	syc2388_d	-	alpha-mannosidase
2390	 56.61	0	2548561..2549097	-	178	56752398	-	syc2389_c	-	hypothetical protein
2391	 53.54	0	2549201..2550145	+	314	56752399	wcaG	syc2390_d	-	GDP-fucose synthetase NAD dependent epimerase/dehydratase
2392	 59.43	0	2550192..2551586	+	464	56752400	-	syc2391_d	-	multi-drug efflux transporter
2393	 55.85	0	2551622..2551963	-	113	56752401	-	syc2392_c	-	hypothetical protein
2394	 52.84	0	2552158..2552439	+	93	56752402	-	syc2393_d	-	hypothetical protein
2395	 58.93	0	2552589..2553338	+	249	56752403	-	syc2394_d	-	hypothetical protein
2396	 47.85	-2	2553413..2554411	-	332	56752404	-	syc2395_c	-	hypothetical protein
2397	 58.48	0	2554544..2557120	-	858	56752405	gyrA	syc2396_c	-	DNA gyrase A subunit
2398	 53.98	0	2557231..2557632	+	133	56752406	divK	syc2397_d	-	two-component system response regulator
2399	 47.26	-2	2557721..2558632	+	303	56752407	-	syc2398_d	-	mrr restriction system protein
2400	 61.41	+1	2558735..2559286	-	183	56752408	-	syc2399_c	-	hypothetical protein
2401	 60.00	0	2559295..2559894	-	199	56752409	-	syc2400_c	-	hypothetical protein
2402	 56.59	0	2560173..2561135	-	320	56752410	-	syc2401_c	-	putative thiosulfate sulfurtransferase
2403	 57.96	0	2561277..2562137	-	286	56752411	cysW	syc2402_c	-	sulfate transport system permease protein
2404	 57.79	0	2562137..2563003	-	288	56752412	cysU	syc2403_c	-	sulfate transport system permease protein
2405	 51.66	-1	2563003..2564028	-	341	56752413	sbpA	syc2404_c	-	sulfate transport system substrate-binding protein
2406	 52.73	0	2564188..2565048	-	286	56752414	cysW	syc2405_c	-	sulfate transport system permease protein
2407	 61.19	+1	2565094..2565714	-	206	56752415	cysR	syc2406_c	-	transcriptional regulator CRP family protein
2408	 54.07	0	2565742..2565987	-	81	56752416	-	syc2407_c	-	hypothetical protein
2409	 57.59	0	2566011..2566847	-	278	56752417	cysT	syc2408_c	-	sulfate transport system permease protein
2410	 54.13	0	2566922..2567974	-	350	56752418	sbpA	syc2409_c	-	sulfate transport system substrate-binding protein
2411	 54.30	0	2568174..2569208	+	344	56752419	cysA	syc2410_d	-	sulfate transport system ATP-binding protein
2412	 54.28	0	2569460..2569798	-	112	56752420	psbW	syc2411_c	-	photosystem II reaction center protein Psb28
2413	 56.17	0	2569897..2570439	+	180	56752421	-	syc2412_d	-	hypothetical protein
2414	 60.02	0	2570453..2571550	+	365	56752422	-	syc2413_d	-	hypothetical protein
2415	 59.17	0	2571581..2572234	+	217	56752423	-	syc2414_d	-	hypothetical protein
2416	 55.97	0	2572284..2572769	+	161	56752424	-	syc2415_d	-	hypothetical protein
2417	 59.94	0	2572884..2573195	+	103	56752425	-	syc2416_d	-	hypothetical protein
2418	 59.16	0	2573196..2573861	+	221	56752426	-	syc2417_d	-	hypothetical protein
2419	 60.06	+1	2573817..2574542	-	241	56752427	vanY	syc2418_c	-	putative carboxypeptidase
2420	 59.48	0	2574603..2575214	-	203	56752428	kdpC	syc2419_c	-	potassium-transporting ATPase C chain
2421	 57.77	0	2575365..2577455	-	696	56752429	kdpB	syc2420_c	-	potassium-transporting ATPase subunit B
2422	 59.37	0	2577498..2579168	-	556	56752430	kdpA	syc2421_c	-	potassium-transporting ATPase subunit A
2423	 59.20	0	2579694..2581085	-	463	56752431	murD	syc2422_c	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2424	 56.31	0	2581191..2581895	+	234	56752432	-	syc2423_d	-	hypothetical protein
2425	 58.60	0	2581946..2583061	-	371	56752433	-	syc2424_c	-	oxidoreductase
2426	 56.04	0	2583236..2583649	+	137	56752434	-	syc2425_d	-	hypothetical protein
2427	 57.48	0	2583803..2585239	+	478	56752435	cysS	syc2426_d	-	cysteinyl-tRNA synthetase
2428	 54.96	0	2585328..2585891	-	187	56752436	-	syc2427_c	-	hypothetical protein
2429	 50.23	-1	2586086..2586961	-	291	56752437	-	syc2428_c	-	potassium channel protein
2430	 55.25	0	2587019..2587666	-	215	56752438	-	syc2429_c	-	nitroreductase
2431	 55.62	0	2587765..2588262	+	165	56752439	-	syc2430_d	-	hypothetical protein
2432	 54.32	0	2588969..2591131	+	720	56752440	katG	syc2431_d	-	catalase/peroxidase
2433	 49.74	-1	2591818..2592201	+	127	56752441	-	syc2432_d	-	hypothetical protein
2434	 54.64	0	2592314..2593510	+	398	56752442	gldA	syc2433_d	-	glycerol dehydrogenase
2435	 55.58	0	2593617..2595257	-	546	56752443	-	syc2434_c	-	Fe-S oxidoreductase
2436	 57.16	0	2595254..2596000	-	248	56752444	rffM	syc2435_c	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
2437	 56.14	0	2596103..2599342	+	1079	56752445	-	syc2436_d	-	phosphorylase kinase alpha subunit
2438	 55.37	0	2599545..2600261	-	238	56752446	-	syc2437_c	-	rubrerythrin
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.