IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2306	 59.59	0	2457141..2461847	-	1568	56752314	-	syc2305_c	-	hypothetical protein
2307	 58.18	0	2462322..2462804	+	160	56752315	nifU	syc2306_d	-	nitrogen fixation protein NifU and related protein
2308	 59.66	0	2462801..2463328	+	175	56752316	ycf51	syc2307_d	-	hypothetical protein
2309	 61.70	+1	2463321..2463743	+	140	56752317	-	syc2308_d	-	hypothetical protein
2310	 54.35	0	2463740..2464567	-	275	56752318	sigF2	syc2309_c	-	RNA polymerase sigma factor SigF
2311	 57.53	0	2464881..2467748	-	955	56752319	-	syc2310_c	-	hypothetical protein
2312	 55.99	0	2467930..2469222	+	430	56752320	thrC	syc2311_d	-	threonine synthase
2313	 53.99	0	2469308..2469583	+	91	56752321	-	syc2312_d	-	hypothetical protein
2314	 57.56	0	2469666..2471291	-	541	56752322	mutL	syc2313_c	-	DNA mismatch repair protein
2315	 57.44	0	2471365..2473131	-	588	56752323	recN	syc2314_c	-	DNA replication and repair protein RecN
2316	 56.88	0	2473173..2475041	+	622	56752324	-	syc2315_d	-	hypothetical protein
2317	 48.95	-1	2475053..2476006	-	317	56752325	-	syc2316_c	-	hypothetical protein
2318	 56.83	0	2476401..2477366	-	321	56752326	-	syc2317_c	-	phosphate starvation-induced protein
2319	 54.60	0	2477493..2477666	-	57	56752327	rpsU	syc2318_c	-	30S ribosomal protein S21
2320	 58.64	0	2477726..2477887	-	53	56752328	-	syc2319_c	-	hypothetical protein
2321	 57.43	0	2478047..2478295	-	82	56752329	rpsP	syc2320_c	-	30S ribosomal protein S16
2322	 58.28	0	2478399..2479889	-	496	56752330	ftsY	syc2321_c	-	signal recognition particle receptor
2323	 59.94	0	2479974..2480300	+	108	56752331	-	syc2322_d	-	hypothetical protein
2324	 53.23	0	2480257..2480643	-	128	56752332	-	syc2323_c	-	hypothetical protein
2325	 62.01	+1	2480643..2481458	-	271	56752333	-	syc2324_c	-	hypothetical protein
2326	 57.47	0	2481561..2482973	+	470	56752334	cydA	syc2325_d	-	cytochrome oxidase d subunit I
2327	 48.35	-1	2483022..2484053	+	343	56752335	cydB	syc2326_d	-	cytochrome oxidase d subunit II
2328	 57.33	0	2484074..2484748	+	224	56752336	-	syc2327_d	-	hypothetical protein
2329	 56.37	0	2484821..2485189	-	122	56752337	-	syc2328_c	-	hypothetical protein
2330	 58.00	0	2485205..2486023	-	272	56752338	-	syc2329_c	-	inositol monophosphate family protein
2331	 59.28	0	2486148..2487473	-	441	56752339	-	syc2330_c	-	hypothetical protein
2332	 56.79	0	2487520..2489250	-	576	56752340	-	syc2331_c	-	hypothetical protein
2333	 60.99	+1	2489431..2490522	-	363	56752341	ald	syc2332_c	-	alanine dehydrogenase
2334	 59.06	0	2490631..2490801	+	56	56752342	-	syc2333_d	-	CAB/ELIP/HLIP-related protein
2335	 59.66	0	2490813..2491868	+	351	56752343	-	syc2334_d	-	hypothetical protein
2336	 58.85	0	2492115..2492306	-	63	56752344	-	syc2335_c	-	hypothetical protein
2337	 59.08	0	2492739..2494556	+	605	56752345	-	syc2336_d	-	hypothetical protein
2338	 58.17	0	2494553..2494705	+	50	56752346	-	syc2337_d	-	hypothetical protein
2339	 61.72	+1	2494696..2495160	+	154	56752347	-	syc2338_d	-	hypothetical protein
2340	 57.10	0	2495280..2496032	+	250	56752348	-	syc2339_d	-	hypothetical protein
2341	 48.53	-1	2496272..2496475	+	67	56752349	-	syc2340_d	-	hypothetical protein
2342	 55.04	0	2496518..2496904	+	128	56752350	ycf35	syc2341_d	-	hypothetical protein
2343	 57.51	0	2496904..2497296	+	130	56752351	-	syc2342_d	-	4Fe-4S ferredoxin
2344	 59.97	0	2497299..2498060	+	253	56752352	-	syc2343_d	-	hypothetical protein
2345	 55.61	0	2498088..2499272	+	394	56752353	-	syc2344_d	-	hypothetical protein
2346	 54.21	0	2499488..2500450	+	320	56752354	rpoD2	syc2345_d	-	group2 RNA polymerase sigma factor RpoD2
2347	 57.17	0	2500750..2501202	+	150	56752355	-	syc2346_d	-	hypothetical protein
2348	 54.01	0	2501217..2501627	-	136	56752356	-	syc2347_c	-	hypothetical protein
2349	 56.29	0	2501774..2502958	-	394	56752357	ndhH	syc2348_c	-	NAD(P)H-quinone oxidoreductase subunit H
2350	 54.80	0	2503217..2504236	-	339	56752358	gap2	syc2349_c	-	glyceraldehyde-3-phosphate dehydrogenase
2351	 57.13	0	2504515..2505951	+	478	56752359	murC	syc2350_d	-	UDP-N-acetylmuramate--L-alanine ligase
2352	 56.40	0	2505962..2506867	+	301	56752360	murB	syc2351_d	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2353	 50.57	-1	2506908..2507081	-	57	56752361	-	syc2352_c	-	mercuric resistance operon regulatory protein
2354	 56.59	0	2507378..2508637	-	419	56752362	nifS	syc2353_c	-	cysteine desulfurase
2355	 59.59	0	2508647..2509975	-	442	56752363	-	syc2354_c	-	hypothetical protein
2356	 55.09	0	2509975..2510760	-	261	56752364	ycf16	syc2355_c	-	ABC transporter ATP-binding protein
2357	 56.46	0	2510806..2512245	-	479	56752365	-	syc2356_c	-	cysteine desulfurase activator complex subunit SufB
2358	 57.02	0	2512293..2512655	-	120	56752366	ftrC	syc2357_c	-	ferredoxin-thioredoxin reductase catalytic chain
2359	 58.45	0	2512831..2513475	+	214	56752367	-	syc2358_d	-	hypothetical protein
2360	 55.23	0	2513472..2513882	+	136	56752368	-	syc2359_d	-	hypothetical protein
2361	 56.38	0	2513879..2514364	+	161	56752369	-	syc2360_d	-	hypothetical protein
2362	 58.50	0	2514410..2514997	-	195	56752370	-	syc2361_c	-	hypothetical protein
2363	 58.46	0	2515045..2516202	-	385	56752371	kdpD	syc2362_c	-	potassium-transporting ATPase D chain
2364	 61.66	+1	2516163..2516681	-	172	56752372	-	syc2363_c	-	hypothetical protein
2365	 56.87	0	2516831..2517412	+	193	56752373	-	syc2364_d	-	hypothetical protein
2366	 52.44	0	2517440..2517931	+	163	56752374	lspA	syc2365_d	-	lipoprotein signal peptidase
2367	 51.24	-1	2517983..2519434	-	483	56752375	-	syc2366_c	-	hypothetical protein
2368	 45.31	-2	2519664..2519972	+	102	56752376	-	syc2367_d	-	hypothetical protein
2369	 58.67	0	2520018..2521568	-	516	56752377	-	syc2368_c	-	carotene isomerase
2370	 54.33	0	2521822..2522907	+	361	56752378	sbpA	syc2369_d	-	sulfate transport system substrate-binding protein
2371	 54.75	0	2523134..2523838	+	234	56752379	-	syc2370_d	-	phycocyanin alpha phycocyanobilin lyase related protein NblB
2372	 53.97	0	2524658..2525098	-	146	56752380	-	syc2371_c	-	hypothetical protein
2373	 57.77	0	2525254..2526681	+	475	56752381	icd	syc2372_d	-	isocitrate dehydrogenase
2374	 59.95	0	2526712..2528022	+	436	56752382	glcE	syc2373_d	-	glycolate oxidase subunit GlcE
2375	 53.21	0	2528019..2529326	+	435	56752383	glcF	syc2374_d	-	glycolate oxidase subunit (Fe-S) protein
2376	 51.36	-1	2529395..2533111	+	1238	56752384	-	syc2375_d	-	hypothetical protein
2377	 58.41	0	2533147..2533800	+	217	56752385	upp	syc2376_d	-	uracil phosphoribosyltransferase
2378	 57.13	0	2533818..2534834	-	338	56752386	metX	syc2377_c	-	hypothetical protein
2379	 57.84	0	2534831..2535691	-	286	56752387	-	syc2378_c	-	hydrocarbon oxygenase MocD
2380	 60.38	+1	2535832..2536197	-	121	56752388	-	syc2379_c	-	hypothetical protein
2381	 61.26	+1	2536203..2536775	-	190	56752389	-	syc2380_c	-	hypothetical protein
2382	 51.95	0	2536772..2537002	-	76	56752390	rpoZ	syc2381_c	-	DNA-directed RNA polymerase subunit omega
2383	 57.91	0	2537161..2538702	+	513	56752391	-	syc2382_d	-	hypothetical protein
2384	 53.70	0	2538824..2540851	-	675	56752392	opdA	syc2383_c	-	oligopeptidase A
2385	 56.94	0	2540986..2541417	-	143	56752393	-	syc2384_c	-	hypothetical protein
2386	 55.95	0	2541624..2543816	-	730	56752394	-	syc2385_c	-	hypothetical protein
2387	 55.83	0	2543985..2544104	-	39	56752395	psbI	syc2386_c	-	photosystem II reaction center I protein I
2388	 59.26	0	2544217..2545026	-	269	56752396	-	syc2387_c	-	hypothetical protein
2389	 56.82	0	2545063..2548110	+	1015	56752397	ams1	syc2388_d	-	alpha-mannosidase
2390	 56.61	0	2548561..2549097	-	178	56752398	-	syc2389_c	-	hypothetical protein
2391	 53.54	0	2549201..2550145	+	314	56752399	wcaG	syc2390_d	-	GDP-fucose synthetase NAD dependent epimerase/dehydratase
2392	 59.43	0	2550192..2551586	+	464	56752400	-	syc2391_d	-	multi-drug efflux transporter
2393	 55.85	0	2551622..2551963	-	113	56752401	-	syc2392_c	-	hypothetical protein
2394	 52.84	0	2552158..2552439	+	93	56752402	-	syc2393_d	-	hypothetical protein
2395	 58.93	0	2552589..2553338	+	249	56752403	-	syc2394_d	-	hypothetical protein
2396	 47.85	-2	2553413..2554411	-	332	56752404	-	syc2395_c	-	hypothetical protein
2397	 58.48	0	2554544..2557120	-	858	56752405	gyrA	syc2396_c	-	DNA gyrase A subunit
2398	 53.98	0	2557231..2557632	+	133	56752406	divK	syc2397_d	-	two-component system response regulator
2399	 47.26	-2	2557721..2558632	+	303	56752407	-	syc2398_d	-	mrr restriction system protein
2400	 61.41	+1	2558735..2559286	-	183	56752408	-	syc2399_c	-	hypothetical protein
2401	 60.00	0	2559295..2559894	-	199	56752409	-	syc2400_c	-	hypothetical protein
2402	 56.59	0	2560173..2561135	-	320	56752410	-	syc2401_c	-	putative thiosulfate sulfurtransferase
2403	 57.96	0	2561277..2562137	-	286	56752411	cysW	syc2402_c	-	sulfate transport system permease protein
2404	 57.79	0	2562137..2563003	-	288	56752412	cysU	syc2403_c	-	sulfate transport system permease protein
2405	 51.66	-1	2563003..2564028	-	341	56752413	sbpA	syc2404_c	-	sulfate transport system substrate-binding protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.