IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2272	 57.66	0	2421885..2422550	+	221	56752280	nblB	syc2271_d	-	phycocyanin alpha phycocyanobilin lyase related protein
2273	 55.74	0	2422547..2422729	-	60	56752281	-	syc2272_c	-	hypothetical protein
2274	 52.78	0	2422787..2423146	-	119	56752282	-	syc2273_c	-	hypothetical protein
2275	 56.10	0	2423250..2424044	+	264	56752283	-	syc2274_d	-	hypothetical protein
2276	 52.99	0	2424121..2424705	-	194	56752284	-	syc2275_c	-	hypothetical protein
2277	 49.37	-1	2424843..2425160	+	105	56752285	-	syc2276_d	-	hypothetical protein
2278	 55.38	0	2425248..2425628	+	126	56752286	-	syc2277_d	-	two-component response regulator
2279	 56.22	0	2425794..2428607	+	937	56752287	-	syc2278_d	-	two-component system sensory histidine kinase
2280	 58.41	0	2428600..2429835	+	411	56752288	-	syc2279_d	-	two-component response regulator
2281	 58.33	0	2429759..2430574	+	271	56752289	-	syc2280_d	-	hypothetical protein
2282	 46.58	-2	2430701..2432617	+	638	56752290	htpG	syc2281_d	-	heat shock protein 90
2283	 41.55	-2	2432957..2436070	-	1037	56752291	-	syc2282_c	-	hypothetical protein
2284	 54.02	0	2436341..2438095	-	584	56752292	dfa3	syc2283_c	-	flavoprotein
2285	 57.63	0	2438311..2440026	-	571	56752293	dfa1	syc2284_c	-	flavoprotein
2286	 55.91	0	2440092..2440835	+	247	56752294	-	syc2285_d	-	pantothenate kinase
2287	 56.15	0	2440808..2441254	-	148	56752295	mutT	syc2286_c	-	mutator MutT-like protein
2288	 54.85	0	2441310..2441783	-	157	56752296	bcp	syc2287_c	-	bacterioferritin comigratory protein
2289	 56.79	0	2441798..2442577	+	259	56752297	-	syc2288_d	-	hypothetical protein
2290	 56.03	0	2442645..2443208	+	187	56752298	-	syc2289_d	-	hypothetical protein
2291	 51.39	-1	2443269..2443700	+	143	56752299	-	syc2290_d	-	transcription regulator
2292	 56.69	0	2443906..2445528	+	540	56752300	-	syc2291_d	-	hypothetical protein
2293	 56.07	0	2445643..2446359	-	238	56752301	-	syc2292_c	-	hypothetical protein
2294	 58.67	0	2446596..2447045	-	149	56752302	-	syc2293_c	-	hypothetical protein
2295	 56.52	0	2447080..2448153	-	357	56752303	hypE	syc2294_c	-	hydrogenase expression/formation protein HypE
2296	 46.09	-2	2448561..2449187	-	208	56752304	-	syc2295_c	-	hypothetical protein
2297	 58.80	0	2449645..2450178	-	177	56752305	-	syc2296_c	-	hypothetical protein
2298	 57.14	0	2450302..2450595	+	97	56752306	-	syc2297_d	-	hypothetical protein
2299	 55.70	0	2450608..2451072	+	154	56752307	smpB	syc2298_d	-	SsrA-binding protein
2300	 59.02	0	2451105..2452268	-	387	161621811	-	syc2299_c	-	succinyldiaminopimelate transaminase
2301	 55.46	0	2452288..2452635	-	115	56752309	trxA	syc2300_c	-	thioredoxin
2302	 56.88	0	2452781..2453761	-	326	56752310	hemB	syc2301_c	-	delta-aminolevulinic acid dehydratase
2303	 54.94	0	2453985..2455220	+	411	56752311	-	syc2302_d	-	hypothetical protein
2304	 45.70	-2	2455241..2455879	-	212	56752312	mbpA	syc2303_c	-	adenine-specific DNA methylase
2305	 59.33	0	2456039..2457019	-	326	56752313	dnaJ	syc2304_c	-	DnaJ protein
2306	 59.59	0	2457141..2461847	-	1568	56752314	-	syc2305_c	-	hypothetical protein
2307	 58.18	0	2462322..2462804	+	160	56752315	nifU	syc2306_d	-	nitrogen fixation protein NifU and related protein
2308	 59.66	0	2462801..2463328	+	175	56752316	ycf51	syc2307_d	-	hypothetical protein
2309	 61.70	+1	2463321..2463743	+	140	56752317	-	syc2308_d	-	hypothetical protein
2310	 54.35	0	2463740..2464567	-	275	56752318	sigF2	syc2309_c	-	RNA polymerase sigma factor SigF
2311	 57.53	0	2464881..2467748	-	955	56752319	-	syc2310_c	-	hypothetical protein
2312	 55.99	0	2467930..2469222	+	430	56752320	thrC	syc2311_d	-	threonine synthase
2313	 53.99	0	2469308..2469583	+	91	56752321	-	syc2312_d	-	hypothetical protein
2314	 57.56	0	2469666..2471291	-	541	56752322	mutL	syc2313_c	-	DNA mismatch repair protein
2315	 57.44	0	2471365..2473131	-	588	56752323	recN	syc2314_c	-	DNA replication and repair protein RecN
2316	 56.88	0	2473173..2475041	+	622	56752324	-	syc2315_d	-	hypothetical protein
2317	 48.95	-1	2475053..2476006	-	317	56752325	-	syc2316_c	-	hypothetical protein
2318	 56.83	0	2476401..2477366	-	321	56752326	-	syc2317_c	-	phosphate starvation-induced protein
2319	 54.60	0	2477493..2477666	-	57	56752327	rpsU	syc2318_c	-	30S ribosomal protein S21
2320	 58.64	0	2477726..2477887	-	53	56752328	-	syc2319_c	-	hypothetical protein
2321	 57.43	0	2478047..2478295	-	82	56752329	rpsP	syc2320_c	-	30S ribosomal protein S16
2322	 58.28	0	2478399..2479889	-	496	56752330	ftsY	syc2321_c	-	signal recognition particle receptor
2323	 59.94	0	2479974..2480300	+	108	56752331	-	syc2322_d	-	hypothetical protein
2324	 53.23	0	2480257..2480643	-	128	56752332	-	syc2323_c	-	hypothetical protein
2325	 62.01	+1	2480643..2481458	-	271	56752333	-	syc2324_c	-	hypothetical protein
2326	 57.47	0	2481561..2482973	+	470	56752334	cydA	syc2325_d	-	cytochrome oxidase d subunit I
2327	 48.35	-1	2483022..2484053	+	343	56752335	cydB	syc2326_d	-	cytochrome oxidase d subunit II
2328	 57.33	0	2484074..2484748	+	224	56752336	-	syc2327_d	-	hypothetical protein
2329	 56.37	0	2484821..2485189	-	122	56752337	-	syc2328_c	-	hypothetical protein
2330	 58.00	0	2485205..2486023	-	272	56752338	-	syc2329_c	-	inositol monophosphate family protein
2331	 59.28	0	2486148..2487473	-	441	56752339	-	syc2330_c	-	hypothetical protein
2332	 56.79	0	2487520..2489250	-	576	56752340	-	syc2331_c	-	hypothetical protein
2333	 60.99	+1	2489431..2490522	-	363	56752341	ald	syc2332_c	-	alanine dehydrogenase
2334	 59.06	0	2490631..2490801	+	56	56752342	-	syc2333_d	-	CAB/ELIP/HLIP-related protein
2335	 59.66	0	2490813..2491868	+	351	56752343	-	syc2334_d	-	hypothetical protein
2336	 58.85	0	2492115..2492306	-	63	56752344	-	syc2335_c	-	hypothetical protein
2337	 59.08	0	2492739..2494556	+	605	56752345	-	syc2336_d	-	hypothetical protein
2338	 58.17	0	2494553..2494705	+	50	56752346	-	syc2337_d	-	hypothetical protein
2339	 61.72	+1	2494696..2495160	+	154	56752347	-	syc2338_d	-	hypothetical protein
2340	 57.10	0	2495280..2496032	+	250	56752348	-	syc2339_d	-	hypothetical protein
2341	 48.53	-1	2496272..2496475	+	67	56752349	-	syc2340_d	-	hypothetical protein
2342	 55.04	0	2496518..2496904	+	128	56752350	ycf35	syc2341_d	-	hypothetical protein
2343	 57.51	0	2496904..2497296	+	130	56752351	-	syc2342_d	-	4Fe-4S ferredoxin
2344	 59.97	0	2497299..2498060	+	253	56752352	-	syc2343_d	-	hypothetical protein
2345	 55.61	0	2498088..2499272	+	394	56752353	-	syc2344_d	-	hypothetical protein
2346	 54.21	0	2499488..2500450	+	320	56752354	rpoD2	syc2345_d	-	group2 RNA polymerase sigma factor RpoD2
2347	 57.17	0	2500750..2501202	+	150	56752355	-	syc2346_d	-	hypothetical protein
2348	 54.01	0	2501217..2501627	-	136	56752356	-	syc2347_c	-	hypothetical protein
2349	 56.29	0	2501774..2502958	-	394	56752357	ndhH	syc2348_c	-	NAD(P)H-quinone oxidoreductase subunit H
2350	 54.80	0	2503217..2504236	-	339	56752358	gap2	syc2349_c	-	glyceraldehyde-3-phosphate dehydrogenase
2351	 57.13	0	2504515..2505951	+	478	56752359	murC	syc2350_d	-	UDP-N-acetylmuramate--L-alanine ligase
2352	 56.40	0	2505962..2506867	+	301	56752360	murB	syc2351_d	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2353	 50.57	-1	2506908..2507081	-	57	56752361	-	syc2352_c	-	mercuric resistance operon regulatory protein
2354	 56.59	0	2507378..2508637	-	419	56752362	nifS	syc2353_c	-	cysteine desulfurase
2355	 59.59	0	2508647..2509975	-	442	56752363	-	syc2354_c	-	hypothetical protein
2356	 55.09	0	2509975..2510760	-	261	56752364	ycf16	syc2355_c	-	ABC transporter ATP-binding protein
2357	 56.46	0	2510806..2512245	-	479	56752365	-	syc2356_c	-	cysteine desulfurase activator complex subunit SufB
2358	 57.02	0	2512293..2512655	-	120	56752366	ftrC	syc2357_c	-	ferredoxin-thioredoxin reductase catalytic chain
2359	 58.45	0	2512831..2513475	+	214	56752367	-	syc2358_d	-	hypothetical protein
2360	 55.23	0	2513472..2513882	+	136	56752368	-	syc2359_d	-	hypothetical protein
2361	 56.38	0	2513879..2514364	+	161	56752369	-	syc2360_d	-	hypothetical protein
2362	 58.50	0	2514410..2514997	-	195	56752370	-	syc2361_c	-	hypothetical protein
2363	 58.46	0	2515045..2516202	-	385	56752371	kdpD	syc2362_c	-	potassium-transporting ATPase D chain
2364	 61.66	+1	2516163..2516681	-	172	56752372	-	syc2363_c	-	hypothetical protein
2365	 56.87	0	2516831..2517412	+	193	56752373	-	syc2364_d	-	hypothetical protein
2366	 52.44	0	2517440..2517931	+	163	56752374	lspA	syc2365_d	-	lipoprotein signal peptidase
2367	 51.24	-1	2517983..2519434	-	483	56752375	-	syc2366_c	-	hypothetical protein
2368	 45.31	-2	2519664..2519972	+	102	56752376	-	syc2367_d	-	hypothetical protein
2369	 58.67	0	2520018..2521568	-	516	56752377	-	syc2368_c	-	carotene isomerase
2370	 54.33	0	2521822..2522907	+	361	56752378	sbpA	syc2369_d	-	sulfate transport system substrate-binding protein
2371	 54.75	0	2523134..2523838	+	234	56752379	-	syc2370_d	-	phycocyanin alpha phycocyanobilin lyase related protein NblB
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.