IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2239	 54.24	0	2391220..2391726	-	168	56752247	cumB	syc2238_c	-	putative cytidine and deoxycytidylate deaminase
2240	 47.41	-2	2391797..2393167	-	456	56752248	cobB	syc2239_c	-	cobyrinic acid a,c-diamide synthase
2241	 47.38	-2	2393171..2394871	-	566	56752249	cobJ	syc2240_c	-	precorrin methylase
2242	 47.66	-2	2394868..2395572	-	234	56752250	cobI	syc2241_c	-	precorrin-2 C20-methyltransferase
2243	 48.73	-1	2395569..2396198	-	209	56752251	cobH	syc2242_c	-	precorrin-8X methylmutase
2244	 45.63	-2	2396223..2397686	-	487	56752252	-	syc2243_c	-	ferredoxin-nitrite reductase-like protein
2245	 59.27	0	2397951..2399180	+	409	56752253	cobL	syc2244_d	-	precorrin-6y c515-methyltransferase
2246	 52.55	0	2399234..2400430	-	398	56752254	rpoD5	syc2245_c	-	RNA polymerase sigma factor SigC
2247	 57.09	0	2401214..2402278	+	354	56752255	asd	syc2246_d	-	aspartate-semialdehyde dehydrogenase
2248	 58.11	0	2402295..2403194	+	299	56752256	dapA	syc2247_d	-	dihydrodipicolinate synthase
2249	 56.99	0	2403243..2405072	+	609	56752257	-	syc2248_d	-	hydrolase
2250	 53.95	0	2405171..2405398	-	75	56752258	-	syc2249_c	-	hypothetical protein
2251	 58.48	0	2405492..2406016	+	174	56752259	-	syc2250_d	-	7-cyano-7-deazaguanine reductase
2252	 60.00	0	2406016..2406825	+	269	56752260	-	syc2251_d	-	hypothetical protein
2253	 54.06	0	2406837..2408105	-	422	56752261	-	syc2252_c	-	transposase
2254	 59.14	0	2408205..2409572	+	455	56752262	murF	syc2253_d	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase
2255	 57.17	0	2409615..2410130	+	171	56752263	-	syc2254_d	-	hypothetical protein
2256	 60.05	+1	2410216..2410956	+	246	56752264	-	syc2255_d	-	hypothetical protein
2257	 57.89	0	2411093..2412619	+	508	56752265	chlB	syc2256_d	-	light-independent protochlorophyllide reductase subunit B
2258	 55.36	0	2412676..2413020	+	114	56752266	-	syc2257_d	-	hypothetical protein
2259	 59.17	0	2413033..2413392	+	119	56752267	-	syc2258_d	-	hypothetical protein
2260	 57.74	0	2413393..2414019	-	208	56752268	-	syc2259_c	-	hypothetical protein
2261	 59.26	0	2414062..2414520	-	152	56752269	-	syc2260_c	-	hypothetical protein
2262	 54.81	0	2414520..2415278	-	252	56752270	-	syc2261_c	-	hypothetical protein
2263	 53.78	0	2415449..2415898	+	149	56752271	-	syc2262_d	-	hypothetical protein
2264	 58.16	0	2416031..2417194	+	387	56752272	guaB	syc2263_d	-	inositol-5-monophosphate dehydrogenase
2265	 48.77	-1	2417500..2417823	+	107	56752273	trxA	syc2264_d	-	thioredoxin
2266	 61.74	+1	2418075..2418845	-	256	56752274	hisA	syc2265_c	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2267	 58.53	0	2418879..2419136	-	85	56752275	-	syc2266_c	-	hypothetical protein
2268	 57.86	0	2419137..2419772	-	211	56752276	-	syc2267_c	-	hypothetical protein
2269	 58.07	0	2419887..2420828	+	313	56752277	-	syc2268_d	-	mRNA-binding protein
2270	 58.38	0	2420825..2421343	-	172	56752278	pgsA	syc2269_c	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2271	 58.28	0	2421420..2421884	+	154	56752279	-	syc2270_d	-	hypothetical protein
2272	 57.66	0	2421885..2422550	+	221	56752280	nblB	syc2271_d	-	phycocyanin alpha phycocyanobilin lyase related protein
2273	 55.74	0	2422547..2422729	-	60	56752281	-	syc2272_c	-	hypothetical protein
2274	 52.78	0	2422787..2423146	-	119	56752282	-	syc2273_c	-	hypothetical protein
2275	 56.10	0	2423250..2424044	+	264	56752283	-	syc2274_d	-	hypothetical protein
2276	 52.99	0	2424121..2424705	-	194	56752284	-	syc2275_c	-	hypothetical protein
2277	 49.37	-1	2424843..2425160	+	105	56752285	-	syc2276_d	-	hypothetical protein
2278	 55.38	0	2425248..2425628	+	126	56752286	-	syc2277_d	-	two-component response regulator
2279	 56.22	0	2425794..2428607	+	937	56752287	-	syc2278_d	-	two-component system sensory histidine kinase
2280	 58.41	0	2428600..2429835	+	411	56752288	-	syc2279_d	-	two-component response regulator
2281	 58.33	0	2429759..2430574	+	271	56752289	-	syc2280_d	-	hypothetical protein
2282	 46.58	-2	2430701..2432617	+	638	56752290	htpG	syc2281_d	-	heat shock protein 90
2283	 41.55	-2	2432957..2436070	-	1037	56752291	-	syc2282_c	-	hypothetical protein
2284	 54.02	0	2436341..2438095	-	584	56752292	dfa3	syc2283_c	-	flavoprotein
2285	 57.63	0	2438311..2440026	-	571	56752293	dfa1	syc2284_c	-	flavoprotein
2286	 55.91	0	2440092..2440835	+	247	56752294	-	syc2285_d	-	pantothenate kinase
2287	 56.15	0	2440808..2441254	-	148	56752295	mutT	syc2286_c	-	mutator MutT-like protein
2288	 54.85	0	2441310..2441783	-	157	56752296	bcp	syc2287_c	-	bacterioferritin comigratory protein
2289	 56.79	0	2441798..2442577	+	259	56752297	-	syc2288_d	-	hypothetical protein
2290	 56.03	0	2442645..2443208	+	187	56752298	-	syc2289_d	-	hypothetical protein
2291	 51.39	-1	2443269..2443700	+	143	56752299	-	syc2290_d	-	transcription regulator
2292	 56.69	0	2443906..2445528	+	540	56752300	-	syc2291_d	-	hypothetical protein
2293	 56.07	0	2445643..2446359	-	238	56752301	-	syc2292_c	-	hypothetical protein
2294	 58.67	0	2446596..2447045	-	149	56752302	-	syc2293_c	-	hypothetical protein
2295	 56.52	0	2447080..2448153	-	357	56752303	hypE	syc2294_c	-	hydrogenase expression/formation protein HypE
2296	 46.09	-2	2448561..2449187	-	208	56752304	-	syc2295_c	-	hypothetical protein
2297	 58.80	0	2449645..2450178	-	177	56752305	-	syc2296_c	-	hypothetical protein
2298	 57.14	0	2450302..2450595	+	97	56752306	-	syc2297_d	-	hypothetical protein
2299	 55.70	0	2450608..2451072	+	154	56752307	smpB	syc2298_d	-	SsrA-binding protein
2300	 59.02	0	2451105..2452268	-	387	161621811	-	syc2299_c	-	succinyldiaminopimelate transaminase
2301	 55.46	0	2452288..2452635	-	115	56752309	trxA	syc2300_c	-	thioredoxin
2302	 56.88	0	2452781..2453761	-	326	56752310	hemB	syc2301_c	-	delta-aminolevulinic acid dehydratase
2303	 54.94	0	2453985..2455220	+	411	56752311	-	syc2302_d	-	hypothetical protein
2304	 45.70	-2	2455241..2455879	-	212	56752312	mbpA	syc2303_c	-	adenine-specific DNA methylase
2305	 59.33	0	2456039..2457019	-	326	56752313	dnaJ	syc2304_c	-	DnaJ protein
2306	 59.59	0	2457141..2461847	-	1568	56752314	-	syc2305_c	-	hypothetical protein
2307	 58.18	0	2462322..2462804	+	160	56752315	nifU	syc2306_d	-	nitrogen fixation protein NifU and related protein
2308	 59.66	0	2462801..2463328	+	175	56752316	ycf51	syc2307_d	-	hypothetical protein
2309	 61.70	+1	2463321..2463743	+	140	56752317	-	syc2308_d	-	hypothetical protein
2310	 54.35	0	2463740..2464567	-	275	56752318	sigF2	syc2309_c	-	RNA polymerase sigma factor SigF
2311	 57.53	0	2464881..2467748	-	955	56752319	-	syc2310_c	-	hypothetical protein
2312	 55.99	0	2467930..2469222	+	430	56752320	thrC	syc2311_d	-	threonine synthase
2313	 53.99	0	2469308..2469583	+	91	56752321	-	syc2312_d	-	hypothetical protein
2314	 57.56	0	2469666..2471291	-	541	56752322	mutL	syc2313_c	-	DNA mismatch repair protein
2315	 57.44	0	2471365..2473131	-	588	56752323	recN	syc2314_c	-	DNA replication and repair protein RecN
2316	 56.88	0	2473173..2475041	+	622	56752324	-	syc2315_d	-	hypothetical protein
2317	 48.95	-1	2475053..2476006	-	317	56752325	-	syc2316_c	-	hypothetical protein
2318	 56.83	0	2476401..2477366	-	321	56752326	-	syc2317_c	-	phosphate starvation-induced protein
2319	 54.60	0	2477493..2477666	-	57	56752327	rpsU	syc2318_c	-	30S ribosomal protein S21
2320	 58.64	0	2477726..2477887	-	53	56752328	-	syc2319_c	-	hypothetical protein
2321	 57.43	0	2478047..2478295	-	82	56752329	rpsP	syc2320_c	-	30S ribosomal protein S16
2322	 58.28	0	2478399..2479889	-	496	56752330	ftsY	syc2321_c	-	signal recognition particle receptor
2323	 59.94	0	2479974..2480300	+	108	56752331	-	syc2322_d	-	hypothetical protein
2324	 53.23	0	2480257..2480643	-	128	56752332	-	syc2323_c	-	hypothetical protein
2325	 62.01	+1	2480643..2481458	-	271	56752333	-	syc2324_c	-	hypothetical protein
2326	 57.47	0	2481561..2482973	+	470	56752334	cydA	syc2325_d	-	cytochrome oxidase d subunit I
2327	 48.35	-1	2483022..2484053	+	343	56752335	cydB	syc2326_d	-	cytochrome oxidase d subunit II
2328	 57.33	0	2484074..2484748	+	224	56752336	-	syc2327_d	-	hypothetical protein
2329	 56.37	0	2484821..2485189	-	122	56752337	-	syc2328_c	-	hypothetical protein
2330	 58.00	0	2485205..2486023	-	272	56752338	-	syc2329_c	-	inositol monophosphate family protein
2331	 59.28	0	2486148..2487473	-	441	56752339	-	syc2330_c	-	hypothetical protein
2332	 56.79	0	2487520..2489250	-	576	56752340	-	syc2331_c	-	hypothetical protein
2333	 60.99	+1	2489431..2490522	-	363	56752341	ald	syc2332_c	-	alanine dehydrogenase
2334	 59.06	0	2490631..2490801	+	56	56752342	-	syc2333_d	-	CAB/ELIP/HLIP-related protein
2335	 59.66	0	2490813..2491868	+	351	56752343	-	syc2334_d	-	hypothetical protein
2336	 58.85	0	2492115..2492306	-	63	56752344	-	syc2335_c	-	hypothetical protein
2337	 59.08	0	2492739..2494556	+	605	56752345	-	syc2336_d	-	hypothetical protein
2338	 58.17	0	2494553..2494705	+	50	56752346	-	syc2337_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.