IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2143	 50.29	-1	2291297..2291638	-	113	56752151	-	syc2142_c	-	hypothetical protein
2144	 57.30	0	2291847..2292209	-	120	56752152	-	syc2143_c	-	hypothetical protein
2145	 44.84	-2	2292398..2292649	-	83	56752153	-	syc2144_c	-	hypothetical protein
2146	 48.87	-1	2292726..2293034	-	102	56752154	-	syc2145_c	-	hypothetical protein
2147	 56.10	0	2293098..2293343	-	81	56752155	-	syc2146_c	-	hypothetical protein
2148	 57.37	0	2293497..2294948	+	483	56752156	-	syc2147_d	-	hypothetical protein
2149	 60.00	0	2295065..2295544	+	159	56752157	-	syc2148_d	-	hypothetical protein
2150	 53.93	0	2295608..2297539	+	643	56752158	uvrC	syc2149_d	-	excinuclease ABC subunit C
2151	 56.95	0	2297620..2298648	-	342	56752159	pdhA	syc2150_c	-	pyruvate dehydrogenase E1 component alpha subunit
2152	 58.81	0	2298999..2300894	+	631	56752160	-	syc2151_d	-	cell division protein Ftn2-like protein
2153	 55.19	0	2300940..2301392	-	150	56752161	-	syc2152_c	-	bacterioferritin comigratory protein
2154	 61.20	+1	2301460..2302227	-	255	56752162	-	syc2153_c	-	hypothetical protein
2155	 58.97	0	2302417..2303676	-	419	56752163	-	syc2154_c	-	putative membrane transporter
2156	 57.41	0	2303673..2304698	-	341	56752164	gap1	syc2155_c	-	glyceraldehyde 3-phosphate dehydrogenase
2157	 57.63	0	2304762..2305823	+	353	56752165	-	syc2156_d	-	multidrug-efflux transporter
2158	 56.14	0	2305910..2306650	+	246	56752166	msrA	syc2157_d	-	peptide methionine sulfoxide reductase
2159	 60.08	+1	2306769..2307011	+	80	56752167	-	syc2158_d	-	hypothetical protein
2160	 59.19	0	2307017..2307805	+	262	56752168	pilD	syc2159_d	-	prepilin peptidase / N-methyltransferase
2161	 61.04	+1	2308047..2309504	-	485	56752169	dacB	syc2160_c	-	D-alanyl-D-alanine carboxypeptidase
2162	 61.13	+1	2309402..2310448	-	348	56752170	-	syc2161_c	-	isopentenyl pyrophosphate isomerase
2163	 56.93	0	2310457..2310990	-	177	56752171	-	syc2162_c	-	hypothetical protein
2164	 56.29	0	2311212..2311982	-	256	56752172	-	syc2163_c	-	serine/threonine protein phosphatase
2165	 59.41	0	2311989..2312732	-	247	56752173	-	syc2164_c	-	hypothetical protein
2166	 62.10	+1	2312744..2313904	-	386	56752174	nifS	syc2165_c	-	cysteine desulfurase
2167	 60.91	+1	2313958..2314200	-	80	56752175	-	syc2166_c	-	hypothetical protein
2168	 57.89	0	2314213..2315055	-	280	56752176	dapF	syc2167_c	-	diaminopimelate epimerase
2169	 57.48	0	2315097..2315390	+	97	56752177	-	syc2168_d	-	hypothetical protein
2170	 59.86	0	2315454..2316305	+	283	56752178	-	syc2169_d	-	peptidase
2171	 58.15	0	2316281..2316832	+	183	56752179	-	syc2170_d	-	hypothetical protein
2172	 57.84	0	2317141..2317797	+	218	56752180	sigG	syc2171_d	-	RNA polymerase sigma factor RpoE
2173	 58.08	0	2317881..2318381	+	166	56752181	-	syc2172_d	-	hypothetical protein
2174	 59.16	0	2318382..2318834	-	150	56752182	-	syc2173_c	-	hypothetical protein
2175	 57.20	0	2318844..2321441	+	865	56752183	leuS	syc2174_d	-	leucyl-tRNA synthetase
2176	 56.69	0	2321711..2322472	+	253	56752184	-	syc2175_d	-	hypothetical protein
2177	 58.57	0	2322437..2323387	-	316	56752185	-	syc2176_c	-	UDP-glucose:tetrahydrobiopterin glucosyltransferase
2178	 60.18	+1	2323577..2324671	-	364	56752186	-	syc2177_c	-	permease of the drug/metabolite transporter
2179	 56.58	0	2324759..2325571	+	270	56752187	sppA	syc2178_d	-	protease IV
2180	 58.27	0	2325628..2326020	+	130	56752188	aroH	syc2179_d	-	chorismate mutase
2181	 57.30	0	2326188..2326646	-	152	56752189	-	syc2180_c	-	hypothetical protein
2182	 57.03	0	2326682..2327065	-	127	56752190	-	syc2181_c	-	hypothetical protein
2183	 53.33	0	2327222..2327311	-	29	56752191	psaM	syc2182_c	-	photosystem I reaction center subunit XII
2184	 57.19	0	2327435..2328109	+	224	56752192	phoU	syc2183_d	-	phosphate transport system regulatory protein
2185	 57.41	0	2328427..2330673	+	748	56752193	zam	syc2184_d	-	protein conferring resistance to acetazolamide Zam
2186	 59.00	0	2330670..2331308	+	212	56752194	ubiX	syc2185_d	-	aromatic acid decarboxylase
2187	 61.14	+1	2331311..2331907	+	198	56752195	-	syc2186_d	-	hypothetical protein
2188	 55.40	0	2331968..2332402	+	144	56752196	-	syc2187_d	-	hypothetical protein
2189	 52.55	0	2332556..2333632	+	358	56752197	ycf59	syc2188_d	-	magnesium-protoporphyrin IX monomethyl ester cyclase
2190	 50.74	-1	2333796..2334536	+	246	56752198	-	syc2189_d	-	hypothetical protein
2191	 50.45	-1	2334551..2337553	+	1000	56752199	hlyB	syc2190_d	-	toxin secretion ABC transporter ATP-binding protein
2192	 46.46	-2	2337595..2338920	+	441	56752200	hlyD	syc2191_d	-	hemolysin secretion protein
2193	 42.09	-2	2338936..2340066	+	376	56752201	-	syc2192_d	-	hypothetical protein
2194	 44.51	-2	2340071..2341117	+	348	56752202	-	syc2193_d	-	putative glycosyltransferase
2195	 43.49	-2	2341210..2343591	+	793	56752203	-	syc2194_d	-	putative glycosyltransferase
2196	 53.44	0	2343636..2344217	-	193	56752204	dcd	syc2195_c	-	deoxycytidine triphosphate deaminase
2197	 55.05	0	2344235..2344759	+	174	56752205	-	syc2196_d	-	hypothetical protein
2198	 59.06	0	2344821..2346227	+	468	56752206	leuC	syc2197_d	-	isopropylmalate isomerase large subunit
2199	 60.04	+1	2346228..2347118	+	296	56752207	-	syc2198_d	-	putative transcripton factor DevT-like protein
2200	 59.21	0	2347148..2348395	+	415	56752208	argJ	syc2199_d	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2201	 56.46	0	2348467..2349279	-	270	56752209	-	syc2200_c	-	hypothetical protein
2202	 58.98	0	2349450..2350529	+	359	56752210	natC	syc2201_d	-	ABC-type Nat permease for neutral amino acids
2203	 57.55	0	2350594..2351295	+	233	56752211	natA	syc2202_d	-	component of ABC transporter for natural amino acids
2204	 54.94	0	2351271..2352080	-	269	56752212	-	syc2203_c	-	hypothetical protein
2205	 46.52	-2	2352077..2352637	-	186	56752213	-	syc2204_c	-	hypothetical protein
2206	 59.76	0	2352795..2353301	-	168	56752214	-	syc2205_c	-	hypothetical protein
2207	 52.51	0	2353467..2355062	+	531	56752215	-	syc2206_d	-	hypothetical protein
2208	 47.26	-2	2355158..2356198	-	346	56752216	-	syc2207_c	-	hypothetical protein
2209	 48.65	-1	2356233..2357525	-	430	56752217	-	syc2208_c	-	mannosyltransferase
2210	 55.64	0	2357578..2359509	-	643	56752218	recJ	syc2209_c	-	single-stranded DNA-specific exonuclease
2211	 57.94	0	2359638..2360405	+	255	56752219	-	syc2210_d	-	CbbY family protein
2212	 60.73	+1	2360402..2360923	+	173	56752220	-	syc2211_d	-	cytidyltransferase
2213	 57.64	0	2360923..2361642	+	239	56752221	ycf53	syc2212_d	-	hypothetical protein
2214	 54.99	0	2361825..2362235	+	136	56752222	psbU	syc2213_d	-	photosystem II complex extrinsic protein precursor U
2215	 60.07	+1	2362368..2363975	+	535	56752223	nadB	syc2214_d	-	L-aspartate oxidase
2216	 56.12	0	2364462..2365400	+	312	56752224	moxR	syc2215_d	-	MoxR protein
2217	 57.00	0	2365397..2366389	+	330	56752225	-	syc2216_d	-	hypothetical protein
2218	 59.73	0	2366386..2368389	+	667	56752226	-	syc2217_d	-	transglutaminase family protein
2219	 57.11	0	2368439..2368846	+	135	56752227	-	syc2218_d	-	hypothetical protein
2220	 59.46	0	2368948..2370348	+	466	56752228	-	syc2219_d	-	hypothetical protein
2221	 54.35	0	2370425..2370895	+	156	56752229	-	syc2220_d	-	tRNA/rRNA methyltransferase
2222	 45.37	-2	2370973..2371653	-	226	56752230	-	syc2221_c	-	two-component response regulator
2223	 41.06	-2	2371650..2373098	-	482	56752231	-	syc2222_c	-	two-component sensor histidine kinase
2224	 42.32	-2	2373208..2373741	-	177	56752232	-	syc2223_c	-	hypothetical protein
2225	 60.05	+1	2374235..2375518	+	427	56752233	-	syc2224_d	-	hypothetical protein
2226	 58.92	0	2375515..2378769	+	1084	56752234	-	syc2225_d	-	cation efflux system protein
2227	 58.10	0	2378796..2379227	-	143	56752235	-	syc2226_c	-	hypothetical protein
2228	 58.50	0	2379231..2380148	-	305	56752236	-	syc2227_c	-	deoxyribodipyrimidine photolyase
2229	 61.19	+1	2380241..2380660	+	139	56752237	-	syc2228_d	-	hypothetical protein
2230	 59.17	0	2380657..2381577	-	306	56752238	ppnK	syc2229_c	-	inorganic polyphosphate/ATP-NAD kinase
2231	 59.11	0	2381854..2382462	-	202	56752239	-	syc2230_c	-	hypothetical protein
2232	 59.18	0	2382468..2383349	-	293	56752240	hemG	syc2231_c	-	protoporphyrinogen IX oxidase
2233	 52.25	0	2383362..2384381	-	339	56752241	-	syc2232_c	-	hypothetical protein
2234	 57.82	0	2384445..2385710	+	421	56752242	natB	syc2233_d	-	periplasmic binding protein of ABC transporter for natural amino acids
2235	 54.38	0	2385868..2386575	+	235	56752243	ycf29	syc2234_d	-	two-component response regulator
2236	 48.00	-1	2386564..2389317	-	917	56752244	-	syc2235_c	-	hypothetical protein
2237	 51.74	-1	2389441..2390157	-	238	56752245	ho1	syc2236_c	-	heme oxygenase
2238	 55.33	0	2390325..2391215	+	296	56752246	mmsB	syc2237_d	-	3-hydroxyacid dehydrogenase
2239	 54.24	0	2391220..2391726	-	168	56752247	cumB	syc2238_c	-	putative cytidine and deoxycytidylate deaminase
2240	 47.41	-2	2391797..2393167	-	456	56752248	cobB	syc2239_c	-	cobyrinic acid a,c-diamide synthase
2241	 47.38	-2	2393171..2394871	-	566	56752249	cobJ	syc2240_c	-	precorrin methylase
2242	 47.66	-2	2394868..2395572	-	234	56752250	cobI	syc2241_c	-	precorrin-2 C20-methyltransferase
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.