IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2115	 53.15	0	2264199..2264531	+	110	56752123	-	syc2114_d	-	hypothetical protein
2116	 59.61	0	2264531..2265139	+	202	56752124	-	syc2115_d	-	hypothetical protein
2117	 57.27	0	2265136..2266125	-	329	56752125	rbcR	syc2116_c	-	LysR family transcriptional regulator
2118	 57.22	0	2266294..2266833	+	179	56752126	-	syc2117_d	-	hypothetical protein
2119	 53.87	0	2267051..2267386	+	111	56752127	trxA	syc2118_d	-	thioredoxin
2120	 58.26	0	2267467..2269464	+	665	56752128	ndhF	syc2119_d	-	NAD(P)H-quinone oxidoreductase subunit F
2121	 57.01	0	2269634..2271238	+	534	56752129	ndhD	syc2120_d	-	NAD(P)H-quinone oxidoreductase subunit 4
2122	 53.67	0	2271268..2271621	+	117	56752130	-	syc2121_d	-	hypothetical protein
2123	 57.59	0	2271807..2272643	+	278	56752131	-	syc2122_d	-	hypothetical protein
2124	 53.33	0	2272711..2273880	+	389	56752132	-	syc2123_d	-	mannose-1-phosphate guanyltransferase
2125	 58.85	0	2273974..2274741	+	255	56752133	-	syc2124_d	-	hypothetical protein
2126	 57.91	0	2274807..2275994	+	395	56752134	ama	syc2125_d	-	N-acyl-L-amino acid amidohydrolase
2127	 50.53	-1	2276181..2276558	-	125	56752135	-	syc2126_c	-	hypothetical protein
2128	 55.19	0	2276994..2278352	-	452	56752136	-	syc2127_c	-	hypothetical protein
2129	 54.81	0	2278399..2279292	-	297	56752137	uppP	syc2128_c	-	undecaprenyl pyrophosphate phosphatase
2130	 56.20	0	2279367..2279624	-	85	56752138	-	syc2129_c	-	hypothetical protein
2131	 60.14	+1	2279658..2281358	-	566	56752139	ppx	syc2130_c	-	exopolyphosphatase
2132	 61.16	+1	2281566..2282273	+	235	56752140	ubiA	syc2131_d	-	prenyltransferase
2133	 59.87	0	2282270..2283166	+	298	56752141	-	syc2132_d	-	hypothetical protein
2134	 52.85	0	2283466..2283588	-	40	56752142	psbY	syc2133_c	-	photosystem II PsbY protein
2135	 59.38	0	2283635..2284183	-	182	56752143	-	syc2134_c	-	ferripyochelin binding protein
2136	 56.02	0	2284341..2284847	+	168	56752144	-	syc2135_d	-	hypothetical protein
2137	 56.07	0	2284895..2286697	-	600	56752145	proS	syc2136_c	-	prolyl-tRNA synthetase
2138	 58.06	0	2286904..2287275	+	123	56752146	-	syc2137_d	-	hypothetical protein
2139	 56.62	0	2287366..2287803	+	145	56752147	-	syc2138_d	-	hypothetical protein
2140	 57.19	0	2287924..2288841	-	305	56752148	accD	syc2139_c	-	acetyl-CoA carboxylase subunit beta
2141	 55.82	0	2289214..2290854	+	546	161621812	pyrG	syc2140_d	-	CTP synthetase
2142	 52.45	0	2290858..2291244	+	128	56752150	-	syc2141_d	-	hypothetical protein
2143	 50.29	-1	2291297..2291638	-	113	56752151	-	syc2142_c	-	hypothetical protein
2144	 57.30	0	2291847..2292209	-	120	56752152	-	syc2143_c	-	hypothetical protein
2145	 44.84	-2	2292398..2292649	-	83	56752153	-	syc2144_c	-	hypothetical protein
2146	 48.87	-1	2292726..2293034	-	102	56752154	-	syc2145_c	-	hypothetical protein
2147	 56.10	0	2293098..2293343	-	81	56752155	-	syc2146_c	-	hypothetical protein
2148	 57.37	0	2293497..2294948	+	483	56752156	-	syc2147_d	-	hypothetical protein
2149	 60.00	0	2295065..2295544	+	159	56752157	-	syc2148_d	-	hypothetical protein
2150	 53.93	0	2295608..2297539	+	643	56752158	uvrC	syc2149_d	-	excinuclease ABC subunit C
2151	 56.95	0	2297620..2298648	-	342	56752159	pdhA	syc2150_c	-	pyruvate dehydrogenase E1 component alpha subunit
2152	 58.81	0	2298999..2300894	+	631	56752160	-	syc2151_d	-	cell division protein Ftn2-like protein
2153	 55.19	0	2300940..2301392	-	150	56752161	-	syc2152_c	-	bacterioferritin comigratory protein
2154	 61.20	+1	2301460..2302227	-	255	56752162	-	syc2153_c	-	hypothetical protein
2155	 58.97	0	2302417..2303676	-	419	56752163	-	syc2154_c	-	putative membrane transporter
2156	 57.41	0	2303673..2304698	-	341	56752164	gap1	syc2155_c	-	glyceraldehyde 3-phosphate dehydrogenase
2157	 57.63	0	2304762..2305823	+	353	56752165	-	syc2156_d	-	multidrug-efflux transporter
2158	 56.14	0	2305910..2306650	+	246	56752166	msrA	syc2157_d	-	peptide methionine sulfoxide reductase
2159	 60.08	+1	2306769..2307011	+	80	56752167	-	syc2158_d	-	hypothetical protein
2160	 59.19	0	2307017..2307805	+	262	56752168	pilD	syc2159_d	-	prepilin peptidase / N-methyltransferase
2161	 61.04	+1	2308047..2309504	-	485	56752169	dacB	syc2160_c	-	D-alanyl-D-alanine carboxypeptidase
2162	 61.13	+1	2309402..2310448	-	348	56752170	-	syc2161_c	-	isopentenyl pyrophosphate isomerase
2163	 56.93	0	2310457..2310990	-	177	56752171	-	syc2162_c	-	hypothetical protein
2164	 56.29	0	2311212..2311982	-	256	56752172	-	syc2163_c	-	serine/threonine protein phosphatase
2165	 59.41	0	2311989..2312732	-	247	56752173	-	syc2164_c	-	hypothetical protein
2166	 62.10	+1	2312744..2313904	-	386	56752174	nifS	syc2165_c	-	cysteine desulfurase
2167	 60.91	+1	2313958..2314200	-	80	56752175	-	syc2166_c	-	hypothetical protein
2168	 57.89	0	2314213..2315055	-	280	56752176	dapF	syc2167_c	-	diaminopimelate epimerase
2169	 57.48	0	2315097..2315390	+	97	56752177	-	syc2168_d	-	hypothetical protein
2170	 59.86	0	2315454..2316305	+	283	56752178	-	syc2169_d	-	peptidase
2171	 58.15	0	2316281..2316832	+	183	56752179	-	syc2170_d	-	hypothetical protein
2172	 57.84	0	2317141..2317797	+	218	56752180	sigG	syc2171_d	-	RNA polymerase sigma factor RpoE
2173	 58.08	0	2317881..2318381	+	166	56752181	-	syc2172_d	-	hypothetical protein
2174	 59.16	0	2318382..2318834	-	150	56752182	-	syc2173_c	-	hypothetical protein
2175	 57.20	0	2318844..2321441	+	865	56752183	leuS	syc2174_d	-	leucyl-tRNA synthetase
2176	 56.69	0	2321711..2322472	+	253	56752184	-	syc2175_d	-	hypothetical protein
2177	 58.57	0	2322437..2323387	-	316	56752185	-	syc2176_c	-	UDP-glucose:tetrahydrobiopterin glucosyltransferase
2178	 60.18	+1	2323577..2324671	-	364	56752186	-	syc2177_c	-	permease of the drug/metabolite transporter
2179	 56.58	0	2324759..2325571	+	270	56752187	sppA	syc2178_d	-	protease IV
2180	 58.27	0	2325628..2326020	+	130	56752188	aroH	syc2179_d	-	chorismate mutase
2181	 57.30	0	2326188..2326646	-	152	56752189	-	syc2180_c	-	hypothetical protein
2182	 57.03	0	2326682..2327065	-	127	56752190	-	syc2181_c	-	hypothetical protein
2183	 53.33	0	2327222..2327311	-	29	56752191	psaM	syc2182_c	-	photosystem I reaction center subunit XII
2184	 57.19	0	2327435..2328109	+	224	56752192	phoU	syc2183_d	-	phosphate transport system regulatory protein
2185	 57.41	0	2328427..2330673	+	748	56752193	zam	syc2184_d	-	protein conferring resistance to acetazolamide Zam
2186	 59.00	0	2330670..2331308	+	212	56752194	ubiX	syc2185_d	-	aromatic acid decarboxylase
2187	 61.14	+1	2331311..2331907	+	198	56752195	-	syc2186_d	-	hypothetical protein
2188	 55.40	0	2331968..2332402	+	144	56752196	-	syc2187_d	-	hypothetical protein
2189	 52.55	0	2332556..2333632	+	358	56752197	ycf59	syc2188_d	-	magnesium-protoporphyrin IX monomethyl ester cyclase
2190	 50.74	-1	2333796..2334536	+	246	56752198	-	syc2189_d	-	hypothetical protein
2191	 50.45	-1	2334551..2337553	+	1000	56752199	hlyB	syc2190_d	-	toxin secretion ABC transporter ATP-binding protein
2192	 46.46	-2	2337595..2338920	+	441	56752200	hlyD	syc2191_d	-	hemolysin secretion protein
2193	 42.09	-2	2338936..2340066	+	376	56752201	-	syc2192_d	-	hypothetical protein
2194	 44.51	-2	2340071..2341117	+	348	56752202	-	syc2193_d	-	putative glycosyltransferase
2195	 43.49	-2	2341210..2343591	+	793	56752203	-	syc2194_d	-	putative glycosyltransferase
2196	 53.44	0	2343636..2344217	-	193	56752204	dcd	syc2195_c	-	deoxycytidine triphosphate deaminase
2197	 55.05	0	2344235..2344759	+	174	56752205	-	syc2196_d	-	hypothetical protein
2198	 59.06	0	2344821..2346227	+	468	56752206	leuC	syc2197_d	-	isopropylmalate isomerase large subunit
2199	 60.04	+1	2346228..2347118	+	296	56752207	-	syc2198_d	-	putative transcripton factor DevT-like protein
2200	 59.21	0	2347148..2348395	+	415	56752208	argJ	syc2199_d	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2201	 56.46	0	2348467..2349279	-	270	56752209	-	syc2200_c	-	hypothetical protein
2202	 58.98	0	2349450..2350529	+	359	56752210	natC	syc2201_d	-	ABC-type Nat permease for neutral amino acids
2203	 57.55	0	2350594..2351295	+	233	56752211	natA	syc2202_d	-	component of ABC transporter for natural amino acids
2204	 54.94	0	2351271..2352080	-	269	56752212	-	syc2203_c	-	hypothetical protein
2205	 46.52	-2	2352077..2352637	-	186	56752213	-	syc2204_c	-	hypothetical protein
2206	 59.76	0	2352795..2353301	-	168	56752214	-	syc2205_c	-	hypothetical protein
2207	 52.51	0	2353467..2355062	+	531	56752215	-	syc2206_d	-	hypothetical protein
2208	 47.26	-2	2355158..2356198	-	346	56752216	-	syc2207_c	-	hypothetical protein
2209	 48.65	-1	2356233..2357525	-	430	56752217	-	syc2208_c	-	mannosyltransferase
2210	 55.64	0	2357578..2359509	-	643	56752218	recJ	syc2209_c	-	single-stranded DNA-specific exonuclease
2211	 57.94	0	2359638..2360405	+	255	56752219	-	syc2210_d	-	CbbY family protein
2212	 60.73	+1	2360402..2360923	+	173	56752220	-	syc2211_d	-	cytidyltransferase
2213	 57.64	0	2360923..2361642	+	239	56752221	ycf53	syc2212_d	-	hypothetical protein
2214	 54.99	0	2361825..2362235	+	136	56752222	psbU	syc2213_d	-	photosystem II complex extrinsic protein precursor U
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.