IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2084	 58.82	0	2234301..2235524	-	407	56752092	spoIID	syc2083_c	-	stage II sporulation protein D
2085	 58.97	0	2235639..2236820	+	393	56752093	ycf56	syc2084_d	-	ribonuclease Z
2086	 54.01	0	2236890..2237537	+	215	56752094	psbV	syc2085_d	-	cytochrome c-550
2087	 58.14	0	2237897..2240665	-	922	56752095	-	syc2086_c	-	hypothetical protein
2088	 56.61	0	2240677..2241183	-	168	56752096	-	syc2087_c	-	hypothetical protein
2089	 53.29	0	2241249..2241749	+	166	56752097	coaD	syc2088_d	-	phosphopantetheine adenylyltransferase
2090	 58.66	0	2241746..2242432	+	228	56752098	-	syc2089_d	-	hypothetical protein
2091	 57.30	0	2242581..2243402	-	273	56752099	-	syc2090_c	-	hypothetical protein
2092	 54.99	0	2243412..2244002	-	196	56752100	sigI	syc2091_c	-	RNA polymerase sigma factor
2093	 59.38	0	2244224..2244937	-	237	56752101	-	syc2092_c	-	hypothetical protein
2094	 59.33	0	2244985..2245434	-	149	56752102	-	syc2093_c	-	hypothetical protein
2095	 62.31	+1	2245547..2245867	+	106	56752103	-	syc2094_d	-	hypothetical protein
2096	 60.27	+1	2245855..2246682	+	275	56752104	minC	syc2095_d	-	septum formation inhibitor
2097	 59.56	0	2246850..2249072	+	740	56752105	-	syc2096_d	-	penicillin-binding protein
2098	 56.25	0	2249295..2249582	+	95	56752106	rbp2	syc2097_d	-	RRM type RNA-binding protein
2099	 56.29	0	2249887..2250474	-	195	56752107	-	syc2098_c	-	hypothetical protein
2100	 54.79	0	2250660..2250878	+	72	56752108	hliA	syc2099_d	-	high light-inducible protein
2101	 59.54	0	2251063..2251413	+	116	56752109	-	syc2100_d	-	hypothetical protein
2102	 55.19	0	2251469..2252104	+	211	56752110	hisIE	syc2101_d	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2103	 58.02	0	2252134..2252850	-	238	56752111	masA	syc2102_c	-	putative enolase-phosphatase E-1s
2104	 57.17	0	2252856..2253476	-	206	56752112	-	syc2103_c	-	hypothetical protein
2105	 56.26	0	2253596..2254642	+	348	56752113	eIF2BA	syc2104_d	-	translation initiation factor eIF-2B alpha subunit
2106	 49.25	-1	2254709..2255110	+	133	56752114	-	syc2105_d	-	hypothetical protein
2107	 51.28	-1	2255503..2256165	+	220	56752115	-	syc2106_d	-	hypothetical protein
2108	 49.12	-1	2256212..2257123	+	303	56752116	-	syc2107_d	-	cation efflux system protein
2109	 53.35	0	2257173..2258306	+	377	56752117	-	syc2108_d	-	hypothetical protein
2110	 47.94	-1	2258897..2259211	-	104	56752118	-	syc2109_c	-	hypothetical protein
2111	 57.82	0	2259377..2260699	+	440	56752119	pqqL	syc2110_d	-	processing protease
2112	 56.94	0	2260692..2261585	+	297	56752120	-	syc2111_d	-	hypothetical protein
2113	 56.53	0	2261618..2262544	-	308	56752121	pys	syc2112_c	-	phytoene synthase
2114	 54.95	0	2262625..2264049	-	474	56752122	pds	syc2113_c	-	phytoene dehydrogenase
2115	 53.15	0	2264199..2264531	+	110	56752123	-	syc2114_d	-	hypothetical protein
2116	 59.61	0	2264531..2265139	+	202	56752124	-	syc2115_d	-	hypothetical protein
2117	 57.27	0	2265136..2266125	-	329	56752125	rbcR	syc2116_c	-	LysR family transcriptional regulator
2118	 57.22	0	2266294..2266833	+	179	56752126	-	syc2117_d	-	hypothetical protein
2119	 53.87	0	2267051..2267386	+	111	56752127	trxA	syc2118_d	-	thioredoxin
2120	 58.26	0	2267467..2269464	+	665	56752128	ndhF	syc2119_d	-	NAD(P)H-quinone oxidoreductase subunit F
2121	 57.01	0	2269634..2271238	+	534	56752129	ndhD	syc2120_d	-	NAD(P)H-quinone oxidoreductase subunit 4
2122	 53.67	0	2271268..2271621	+	117	56752130	-	syc2121_d	-	hypothetical protein
2123	 57.59	0	2271807..2272643	+	278	56752131	-	syc2122_d	-	hypothetical protein
2124	 53.33	0	2272711..2273880	+	389	56752132	-	syc2123_d	-	mannose-1-phosphate guanyltransferase
2125	 58.85	0	2273974..2274741	+	255	56752133	-	syc2124_d	-	hypothetical protein
2126	 57.91	0	2274807..2275994	+	395	56752134	ama	syc2125_d	-	N-acyl-L-amino acid amidohydrolase
2127	 50.53	-1	2276181..2276558	-	125	56752135	-	syc2126_c	-	hypothetical protein
2128	 55.19	0	2276994..2278352	-	452	56752136	-	syc2127_c	-	hypothetical protein
2129	 54.81	0	2278399..2279292	-	297	56752137	uppP	syc2128_c	-	undecaprenyl pyrophosphate phosphatase
2130	 56.20	0	2279367..2279624	-	85	56752138	-	syc2129_c	-	hypothetical protein
2131	 60.14	+1	2279658..2281358	-	566	56752139	ppx	syc2130_c	-	exopolyphosphatase
2132	 61.16	+1	2281566..2282273	+	235	56752140	ubiA	syc2131_d	-	prenyltransferase
2133	 59.87	0	2282270..2283166	+	298	56752141	-	syc2132_d	-	hypothetical protein
2134	 52.85	0	2283466..2283588	-	40	56752142	psbY	syc2133_c	-	photosystem II PsbY protein
2135	 59.38	0	2283635..2284183	-	182	56752143	-	syc2134_c	-	ferripyochelin binding protein
2136	 56.02	0	2284341..2284847	+	168	56752144	-	syc2135_d	-	hypothetical protein
2137	 56.07	0	2284895..2286697	-	600	56752145	proS	syc2136_c	-	prolyl-tRNA synthetase
2138	 58.06	0	2286904..2287275	+	123	56752146	-	syc2137_d	-	hypothetical protein
2139	 56.62	0	2287366..2287803	+	145	56752147	-	syc2138_d	-	hypothetical protein
2140	 57.19	0	2287924..2288841	-	305	56752148	accD	syc2139_c	-	acetyl-CoA carboxylase subunit beta
2141	 55.82	0	2289214..2290854	+	546	161621812	pyrG	syc2140_d	-	CTP synthetase
2142	 52.45	0	2290858..2291244	+	128	56752150	-	syc2141_d	-	hypothetical protein
2143	 50.29	-1	2291297..2291638	-	113	56752151	-	syc2142_c	-	hypothetical protein
2144	 57.30	0	2291847..2292209	-	120	56752152	-	syc2143_c	-	hypothetical protein
2145	 44.84	-2	2292398..2292649	-	83	56752153	-	syc2144_c	-	hypothetical protein
2146	 48.87	-1	2292726..2293034	-	102	56752154	-	syc2145_c	-	hypothetical protein
2147	 56.10	0	2293098..2293343	-	81	56752155	-	syc2146_c	-	hypothetical protein
2148	 57.37	0	2293497..2294948	+	483	56752156	-	syc2147_d	-	hypothetical protein
2149	 60.00	0	2295065..2295544	+	159	56752157	-	syc2148_d	-	hypothetical protein
2150	 53.93	0	2295608..2297539	+	643	56752158	uvrC	syc2149_d	-	excinuclease ABC subunit C
2151	 56.95	0	2297620..2298648	-	342	56752159	pdhA	syc2150_c	-	pyruvate dehydrogenase E1 component alpha subunit
2152	 58.81	0	2298999..2300894	+	631	56752160	-	syc2151_d	-	cell division protein Ftn2-like protein
2153	 55.19	0	2300940..2301392	-	150	56752161	-	syc2152_c	-	bacterioferritin comigratory protein
2154	 61.20	+1	2301460..2302227	-	255	56752162	-	syc2153_c	-	hypothetical protein
2155	 58.97	0	2302417..2303676	-	419	56752163	-	syc2154_c	-	putative membrane transporter
2156	 57.41	0	2303673..2304698	-	341	56752164	gap1	syc2155_c	-	glyceraldehyde 3-phosphate dehydrogenase
2157	 57.63	0	2304762..2305823	+	353	56752165	-	syc2156_d	-	multidrug-efflux transporter
2158	 56.14	0	2305910..2306650	+	246	56752166	msrA	syc2157_d	-	peptide methionine sulfoxide reductase
2159	 60.08	+1	2306769..2307011	+	80	56752167	-	syc2158_d	-	hypothetical protein
2160	 59.19	0	2307017..2307805	+	262	56752168	pilD	syc2159_d	-	prepilin peptidase / N-methyltransferase
2161	 61.04	+1	2308047..2309504	-	485	56752169	dacB	syc2160_c	-	D-alanyl-D-alanine carboxypeptidase
2162	 61.13	+1	2309402..2310448	-	348	56752170	-	syc2161_c	-	isopentenyl pyrophosphate isomerase
2163	 56.93	0	2310457..2310990	-	177	56752171	-	syc2162_c	-	hypothetical protein
2164	 56.29	0	2311212..2311982	-	256	56752172	-	syc2163_c	-	serine/threonine protein phosphatase
2165	 59.41	0	2311989..2312732	-	247	56752173	-	syc2164_c	-	hypothetical protein
2166	 62.10	+1	2312744..2313904	-	386	56752174	nifS	syc2165_c	-	cysteine desulfurase
2167	 60.91	+1	2313958..2314200	-	80	56752175	-	syc2166_c	-	hypothetical protein
2168	 57.89	0	2314213..2315055	-	280	56752176	dapF	syc2167_c	-	diaminopimelate epimerase
2169	 57.48	0	2315097..2315390	+	97	56752177	-	syc2168_d	-	hypothetical protein
2170	 59.86	0	2315454..2316305	+	283	56752178	-	syc2169_d	-	peptidase
2171	 58.15	0	2316281..2316832	+	183	56752179	-	syc2170_d	-	hypothetical protein
2172	 57.84	0	2317141..2317797	+	218	56752180	sigG	syc2171_d	-	RNA polymerase sigma factor RpoE
2173	 58.08	0	2317881..2318381	+	166	56752181	-	syc2172_d	-	hypothetical protein
2174	 59.16	0	2318382..2318834	-	150	56752182	-	syc2173_c	-	hypothetical protein
2175	 57.20	0	2318844..2321441	+	865	56752183	leuS	syc2174_d	-	leucyl-tRNA synthetase
2176	 56.69	0	2321711..2322472	+	253	56752184	-	syc2175_d	-	hypothetical protein
2177	 58.57	0	2322437..2323387	-	316	56752185	-	syc2176_c	-	UDP-glucose:tetrahydrobiopterin glucosyltransferase
2178	 60.18	+1	2323577..2324671	-	364	56752186	-	syc2177_c	-	permease of the drug/metabolite transporter
2179	 56.58	0	2324759..2325571	+	270	56752187	sppA	syc2178_d	-	protease IV
2180	 58.27	0	2325628..2326020	+	130	56752188	aroH	syc2179_d	-	chorismate mutase
2181	 57.30	0	2326188..2326646	-	152	56752189	-	syc2180_c	-	hypothetical protein
2182	 57.03	0	2326682..2327065	-	127	56752190	-	syc2181_c	-	hypothetical protein
2183	 53.33	0	2327222..2327311	-	29	56752191	psaM	syc2182_c	-	photosystem I reaction center subunit XII
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.