IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2043	 58.42	0	2187728..2189170	+	480	56752051	-	syc2042_d	-	hypothetical protein
2044	 56.59	0	2189340..2190629	-	429	56752052	-	syc2043_c	-	hypothetical protein
2045	 56.50	0	2190994..2193285	+	763	56752053	psaA	syc2044_d	-	photosystem I P700 chlorophyll a apoprotein A1
2046	 57.10	0	2193305..2195509	+	734	56752054	psaB	syc2045_d	-	photosystem I P700 chlorophyll a apoprotein A2
2047	 58.42	0	2195659..2198520	-	953	56752055	gcvP	syc2046_c	-	glycine dehydrogenase
2048	 56.41	0	2198579..2198968	-	129	56752056	gcvH	syc2047_c	-	glycine cleavage system protein H
2049	 59.05	0	2199393..2202896	+	1167	56752057	-	syc2048_d	-	chromosome segregation protein SMC1
2050	 59.76	0	2203040..2204053	+	337	56752058	-	syc2049_d	-	hypothetical protein
2051	 55.24	0	2204358..2204777	+	139	56752059	-	syc2050_d	-	S-adenosylmethionine decarboxylase proenzyme
2052	 55.05	0	2204894..2205220	+	108	56752060	-	syc2051_d	-	hypothetical protein
2053	 58.27	0	2205227..2205631	-	134	56752061	-	syc2052_c	-	hypothetical protein
2054	 58.80	0	2205628..2206848	-	406	56752062	-	syc2053_c	-	virulence factor MviN homolog.
2055	 55.98	0	2206896..2207606	+	236	56752063	sfsA	syc2054_d	-	sugar fermentation stimulation protein A
2056	 51.05	-1	2207690..2208496	+	268	56752064	-	syc2055_d	-	hypothetical protein
2057	 46.32	-2	2208970..2209662	+	230	56752065	-	syc2056_d	-	transcription regulator
2058	 57.21	0	2209866..2210510	+	214	56752066	-	syc2057_d	-	hypothetical protein
2059	 56.11	0	2210485..2211507	+	340	56752067	-	syc2058_d	-	hypothetical protein
2060	 57.69	0	2211511..2212212	+	233	56752068	-	syc2059_d	-	hypothetical protein
2061	 59.29	0	2212179..2212544	+	121	56752069	-	syc2060_d	-	hypothetical protein
2062	 59.68	0	2212521..2213636	-	371	56752070	-	syc2061_c	-	hypothetical protein
2063	 59.60	0	2214008..2214700	-	230	56752071	-	syc2062_c	-	hypothetical protein
2064	 57.34	0	2214722..2215933	-	403	56752072	norA	syc2063_c	-	multidrug-efflux transporter quinolene resistance protein NorA
2065	 58.42	0	2216026..2216607	+	193	56752073	-	syc2064_d	-	hypothetical protein
2066	 55.38	0	2216730..2217482	+	250	56752074	cpcG	syc2065_d	-	phycobilisome rod-core linker polypeptide
2067	 58.85	0	2217645..2219231	-	528	56752075	pgi	syc2066_c	-	glucose-6-phosphate isomerase
2068	 57.16	0	2219354..2220415	-	353	56752076	rfbW	syc2067_c	-	glycosyltransferase
2069	 56.59	0	2220430..2221173	-	247	56752077	-	syc2068_c	-	glycosly transferase
2070	 55.98	0	2221176..2222579	-	467	56752078	-	syc2069_c	-	glycosyltransferase
2071	 57.55	0	2222582..2223667	-	361	56752079	rfaG	syc2070_c	-	glycosyltransferase
2072	 59.56	0	2223772..2224644	+	290	56752080	-	syc2071_d	-	hypothetical protein
2073	 54.55	0	2224809..2225270	+	153	56752081	-	syc2072_d	-	hypothetical protein
2074	 56.64	0	2225327..2226652	+	441	56752082	nusA	syc2073_d	-	transcription elongation factor NusA
2075	 60.88	+1	2226649..2226942	+	97	56752083	-	syc2074_d	-	hypothetical protein
2076	 59.72	0	2227093..2230185	+	1030	56752084	infB	syc2075_d	-	translation initiation factor IF-2
2077	 56.55	0	2230268..2231137	+	289	56752085	-	syc2076_d	-	hypothetical protein
2078	 56.10	0	2231201..2231446	-	81	56752086	-	syc2077_c	-	hypothetical protein
2079	 58.50	0	2231660..2231953	-	97	56752087	-	syc2078_c	-	hypothetical protein
2080	 52.50	0	2232108..2232227	+	39	56752088	psbX	syc2079_d	-	photosystem II PsbX protein
2081	 60.43	+1	2232345..2233178	+	277	56752089	ycf66	syc2080_d	-	hypothetical protein
2082	 60.61	+1	2233187..2233780	+	197	56752090	-	syc2081_d	-	hypothetical protein
2083	 58.33	0	2233777..2234304	+	175	56752091	-	syc2082_d	-	hypothetical protein
2084	 58.82	0	2234301..2235524	-	407	56752092	spoIID	syc2083_c	-	stage II sporulation protein D
2085	 58.97	0	2235639..2236820	+	393	56752093	ycf56	syc2084_d	-	ribonuclease Z
2086	 54.01	0	2236890..2237537	+	215	56752094	psbV	syc2085_d	-	cytochrome c-550
2087	 58.14	0	2237897..2240665	-	922	56752095	-	syc2086_c	-	hypothetical protein
2088	 56.61	0	2240677..2241183	-	168	56752096	-	syc2087_c	-	hypothetical protein
2089	 53.29	0	2241249..2241749	+	166	56752097	coaD	syc2088_d	-	phosphopantetheine adenylyltransferase
2090	 58.66	0	2241746..2242432	+	228	56752098	-	syc2089_d	-	hypothetical protein
2091	 57.30	0	2242581..2243402	-	273	56752099	-	syc2090_c	-	hypothetical protein
2092	 54.99	0	2243412..2244002	-	196	56752100	sigI	syc2091_c	-	RNA polymerase sigma factor
2093	 59.38	0	2244224..2244937	-	237	56752101	-	syc2092_c	-	hypothetical protein
2094	 59.33	0	2244985..2245434	-	149	56752102	-	syc2093_c	-	hypothetical protein
2095	 62.31	+1	2245547..2245867	+	106	56752103	-	syc2094_d	-	hypothetical protein
2096	 60.27	+1	2245855..2246682	+	275	56752104	minC	syc2095_d	-	septum formation inhibitor
2097	 59.56	0	2246850..2249072	+	740	56752105	-	syc2096_d	-	penicillin-binding protein
2098	 56.25	0	2249295..2249582	+	95	56752106	rbp2	syc2097_d	-	RRM type RNA-binding protein
2099	 56.29	0	2249887..2250474	-	195	56752107	-	syc2098_c	-	hypothetical protein
2100	 54.79	0	2250660..2250878	+	72	56752108	hliA	syc2099_d	-	high light-inducible protein
2101	 59.54	0	2251063..2251413	+	116	56752109	-	syc2100_d	-	hypothetical protein
2102	 55.19	0	2251469..2252104	+	211	56752110	hisIE	syc2101_d	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2103	 58.02	0	2252134..2252850	-	238	56752111	masA	syc2102_c	-	putative enolase-phosphatase E-1s
2104	 57.17	0	2252856..2253476	-	206	56752112	-	syc2103_c	-	hypothetical protein
2105	 56.26	0	2253596..2254642	+	348	56752113	eIF2BA	syc2104_d	-	translation initiation factor eIF-2B alpha subunit
2106	 49.25	-1	2254709..2255110	+	133	56752114	-	syc2105_d	-	hypothetical protein
2107	 51.28	-1	2255503..2256165	+	220	56752115	-	syc2106_d	-	hypothetical protein
2108	 49.12	-1	2256212..2257123	+	303	56752116	-	syc2107_d	-	cation efflux system protein
2109	 53.35	0	2257173..2258306	+	377	56752117	-	syc2108_d	-	hypothetical protein
2110	 47.94	-1	2258897..2259211	-	104	56752118	-	syc2109_c	-	hypothetical protein
2111	 57.82	0	2259377..2260699	+	440	56752119	pqqL	syc2110_d	-	processing protease
2112	 56.94	0	2260692..2261585	+	297	56752120	-	syc2111_d	-	hypothetical protein
2113	 56.53	0	2261618..2262544	-	308	56752121	pys	syc2112_c	-	phytoene synthase
2114	 54.95	0	2262625..2264049	-	474	56752122	pds	syc2113_c	-	phytoene dehydrogenase
2115	 53.15	0	2264199..2264531	+	110	56752123	-	syc2114_d	-	hypothetical protein
2116	 59.61	0	2264531..2265139	+	202	56752124	-	syc2115_d	-	hypothetical protein
2117	 57.27	0	2265136..2266125	-	329	56752125	rbcR	syc2116_c	-	LysR family transcriptional regulator
2118	 57.22	0	2266294..2266833	+	179	56752126	-	syc2117_d	-	hypothetical protein
2119	 53.87	0	2267051..2267386	+	111	56752127	trxA	syc2118_d	-	thioredoxin
2120	 58.26	0	2267467..2269464	+	665	56752128	ndhF	syc2119_d	-	NAD(P)H-quinone oxidoreductase subunit F
2121	 57.01	0	2269634..2271238	+	534	56752129	ndhD	syc2120_d	-	NAD(P)H-quinone oxidoreductase subunit 4
2122	 53.67	0	2271268..2271621	+	117	56752130	-	syc2121_d	-	hypothetical protein
2123	 57.59	0	2271807..2272643	+	278	56752131	-	syc2122_d	-	hypothetical protein
2124	 53.33	0	2272711..2273880	+	389	56752132	-	syc2123_d	-	mannose-1-phosphate guanyltransferase
2125	 58.85	0	2273974..2274741	+	255	56752133	-	syc2124_d	-	hypothetical protein
2126	 57.91	0	2274807..2275994	+	395	56752134	ama	syc2125_d	-	N-acyl-L-amino acid amidohydrolase
2127	 50.53	-1	2276181..2276558	-	125	56752135	-	syc2126_c	-	hypothetical protein
2128	 55.19	0	2276994..2278352	-	452	56752136	-	syc2127_c	-	hypothetical protein
2129	 54.81	0	2278399..2279292	-	297	56752137	uppP	syc2128_c	-	undecaprenyl pyrophosphate phosphatase
2130	 56.20	0	2279367..2279624	-	85	56752138	-	syc2129_c	-	hypothetical protein
2131	 60.14	+1	2279658..2281358	-	566	56752139	ppx	syc2130_c	-	exopolyphosphatase
2132	 61.16	+1	2281566..2282273	+	235	56752140	ubiA	syc2131_d	-	prenyltransferase
2133	 59.87	0	2282270..2283166	+	298	56752141	-	syc2132_d	-	hypothetical protein
2134	 52.85	0	2283466..2283588	-	40	56752142	psbY	syc2133_c	-	photosystem II PsbY protein
2135	 59.38	0	2283635..2284183	-	182	56752143	-	syc2134_c	-	ferripyochelin binding protein
2136	 56.02	0	2284341..2284847	+	168	56752144	-	syc2135_d	-	hypothetical protein
2137	 56.07	0	2284895..2286697	-	600	56752145	proS	syc2136_c	-	prolyl-tRNA synthetase
2138	 58.06	0	2286904..2287275	+	123	56752146	-	syc2137_d	-	hypothetical protein
2139	 56.62	0	2287366..2287803	+	145	56752147	-	syc2138_d	-	hypothetical protein
2140	 57.19	0	2287924..2288841	-	305	56752148	accD	syc2139_c	-	acetyl-CoA carboxylase subunit beta
2141	 55.82	0	2289214..2290854	+	546	161621812	pyrG	syc2140_d	-	CTP synthetase
2142	 52.45	0	2290858..2291244	+	128	56752150	-	syc2141_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.