IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1985	 53.66	0	2127945..2128313	-	122	56751993	-	syc1984_c	-	hypothetical protein
1986	 49.05	-1	2128577..2128945	+	122	56751994	-	syc1985_d	-	hypothetical protein
1987	 50.25	-1	2128980..2130167	+	395	56751995	cynA	syc1986_d	-	sulfonate/nitrate transport system substrate-binding protein
1988	 48.86	-1	2130177..2130968	+	263	56751996	cynB	syc1987_d	-	sulfonate/nitrate transport system permease protein
1989	 52.41	0	2130972..2131841	+	289	56751997	cynD	syc1988_d	-	sulfonate/nitrate transport system ATP-binding protein
1990	 46.94	-2	2131852..2132292	+	146	56751998	cynS	syc1989_d	-	cyanate hydratase
1991	 58.52	0	2132509..2132913	+	134	56751999	-	syc1990_d	-	hypothetical protein
1992	 61.25	+1	2132956..2133195	-	79	56752000	-	syc1991_c	-	NAD-reducing hydrogenase gamma
1993	 57.29	0	2133207..2134091	-	294	56752001	rfbA	syc1992_c	-	glucose-1-phosphate thymidylyltransferase
1994	 52.51	0	2134088..2135161	-	357	56752002	rfbB	syc1993_c	-	dTDP-glucose 4,6-dehydratase
1995	 54.83	0	2135158..2136027	-	289	56752003	rfbD	syc1994_c	-	dTDP-6-deoxy-L-mannose-dehydrogenase
1996	 55.43	0	2136024..2136575	-	183	56752004	rfbC	syc1995_c	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1997	 57.61	0	2136635..2137561	+	308	56752005	-	syc1996_d	-	hypothetical protein
1998	 48.57	-1	2137571..2139565	-	664	56752006	-	syc1997_c	-	hypothetical protein
1999	 54.17	0	2139794..2140177	-	127	56752007	-	syc1998_c	-	hypothetical protein
2000	 50.25	-1	2140422..2140823	-	133	56752008	-	syc1999_c	-	hypothetical protein
2001	 57.93	0	2140870..2142162	-	430	56752009	cupA	syc2000_c	-	protein involved in low CO2-inducible high affinity CO2 uptake
2002	 59.86	0	2142211..2143752	-	513	56752010	ndhD3	syc2001_c	-	NADH dehydrogenase subunit 4
2003	 59.27	0	2143764..2145602	-	612	56752011	ndhF3	syc2002_c	-	NAD(P)H-quinone oxidoreductase subunit F
2004	 59.28	0	2145853..2147151	-	432	56752012	thrA	syc2003_c	-	homoserine dehydrogenase
2005	 53.88	0	2147447..2148361	+	304	56752013	-	syc2004_d	-	hypothetical protein
2006	 56.51	0	2148716..2149030	-	104	56752014	-	syc2005_c	-	hypothetical protein
2007	 58.85	0	2149116..2149883	-	255	56752015	hisF	syc2006_c	-	imidazole glycerol phosphate synthase subunit HisF
2008	 52.24	0	2150041..2150241	+	66	56752016	-	syc2007_d	-	hypothetical protein
2009	 56.45	0	2150273..2151349	+	358	56752017	-	syc2008_d	-	anion transporting ATPase
2010	 53.42	0	2151506..2152381	+	291	56752018	chlG	syc2009_d	-	bacteriochlorophyll/chlorophyll a synthase
2011	 47.92	-1	2152436..2153107	-	223	56752019	-	syc2010_c	-	hypothetical protein
2012	 58.37	0	2153457..2155445	+	662	56752020	fus	syc2011_d	-	elongation factor G
2013	 55.52	0	2155525..2156475	+	316	56752021	wcaA	syc2012_d	-	glycosyl transferase
2014	 54.45	0	2156604..2158994	-	796	56752022	-	syc2013_c	-	putative phosphoketolase
2015	 58.06	0	2159436..2160458	+	340	56752023	ackA	syc2014_d	-	acetate kinase
2016	 57.43	0	2160467..2161105	+	212	56752024	-	syc2015_d	-	phosphoglycerate mutase
2017	 58.99	0	2161482..2161898	-	138	56752025	-	syc2016_c	-	hypothetical protein
2018	 56.32	0	2161965..2163017	-	350	56752026	-	syc2017_c	-	ribosome-associated GTPase
2019	 60.71	+1	2163014..2163265	-	83	56752027	-	syc2018_c	-	hypothetical protein
2020	 57.38	0	2163262..2164392	-	376	56752028	dnaJ	syc2019_c	-	DnaJ protein
2021	 54.83	0	2164534..2166501	-	655	56752029	dnaK	syc2020_c	-	molecular chaperone DnaK
2022	 55.66	0	2166606..2167250	-	214	56752030	grpE	syc2021_c	-	heat shock protein GrpE
2023	 57.02	0	2167506..2169506	+	666	56752031	pilB	syc2022_d	-	type IV pilus assembly protein PilB
2024	 52.53	0	2169577..2170665	+	362	56752032	pilT1	syc2023_d	-	twitching motility protein PilT
2025	 48.99	-1	2170690..2171922	+	410	56752033	pilC	syc2024_d	-	type IV pilus assembly protein PilC
2026	 58.20	0	2171928..2172482	+	184	56752034	-	syc2025_d	-	hypothetical protein
2027	 59.05	0	2172447..2173694	-	415	56752035	-	syc2026_c	-	hypothetical protein
2028	 56.59	0	2173721..2174752	+	343	56752036	-	syc2027_d	-	tRNA-dihydrouridine synthase A
2029	 44.10	-2	2174816..2175103	+	95	56752037	-	syc2028_d	-	hypothetical protein
2030	 57.58	0	2175227..2176228	-	333	161621813	pheS	syc2029_c	-	phenylalanyl-tRNA synthetase subunit alpha
2031	 60.23	+1	2176364..2177140	+	258	56752039	surE	syc2030_d	-	stationary phase survival protein SurE
2032	 57.52	0	2177211..2178446	+	411	56752040	crtL	syc2031_d	-	lycopene cyclase
2033	 52.59	0	2178568..2178837	+	89	56752041	-	syc2032_d	-	hypothetical protein
2034	 58.56	0	2178862..2179527	+	221	56752042	-	syc2033_d	-	hypothetical protein
2035	 58.10	0	2179693..2180334	+	213	56752043	-	syc2034_d	-	hypothetical protein
2036	 59.12	0	2180470..2181264	+	264	56752044	proC	syc2035_d	-	pyrroline-5-carboxylate reductase
2037	 57.35	0	2181274..2181906	-	210	56752045	-	syc2036_c	-	hypothetical protein
2038	 55.83	0	2182046..2182285	-	79	56752046	-	syc2037_c	-	hypothetical protein
2039	 59.84	0	2182488..2183732	-	414	56752047	ubiH	syc2038_c	-	2-octaprenyl-6-methoxyphenyl hydroxylase
2040	 57.52	0	2183858..2184775	+	305	56752048	-	syc2039_d	-	hypothetical protein
2041	 59.52	0	2184772..2186703	-	643	56752049	-	syc2040_c	-	peptidase
2042	 60.71	+1	2186845..2187717	+	290	56752050	-	syc2041_d	-	oligopeptides ABC transporter permease protein
2043	 58.42	0	2187728..2189170	+	480	56752051	-	syc2042_d	-	hypothetical protein
2044	 56.59	0	2189340..2190629	-	429	56752052	-	syc2043_c	-	hypothetical protein
2045	 56.50	0	2190994..2193285	+	763	56752053	psaA	syc2044_d	-	photosystem I P700 chlorophyll a apoprotein A1
2046	 57.10	0	2193305..2195509	+	734	56752054	psaB	syc2045_d	-	photosystem I P700 chlorophyll a apoprotein A2
2047	 58.42	0	2195659..2198520	-	953	56752055	gcvP	syc2046_c	-	glycine dehydrogenase
2048	 56.41	0	2198579..2198968	-	129	56752056	gcvH	syc2047_c	-	glycine cleavage system protein H
2049	 59.05	0	2199393..2202896	+	1167	56752057	-	syc2048_d	-	chromosome segregation protein SMC1
2050	 59.76	0	2203040..2204053	+	337	56752058	-	syc2049_d	-	hypothetical protein
2051	 55.24	0	2204358..2204777	+	139	56752059	-	syc2050_d	-	S-adenosylmethionine decarboxylase proenzyme
2052	 55.05	0	2204894..2205220	+	108	56752060	-	syc2051_d	-	hypothetical protein
2053	 58.27	0	2205227..2205631	-	134	56752061	-	syc2052_c	-	hypothetical protein
2054	 58.80	0	2205628..2206848	-	406	56752062	-	syc2053_c	-	virulence factor MviN homolog.
2055	 55.98	0	2206896..2207606	+	236	56752063	sfsA	syc2054_d	-	sugar fermentation stimulation protein A
2056	 51.05	-1	2207690..2208496	+	268	56752064	-	syc2055_d	-	hypothetical protein
2057	 46.32	-2	2208970..2209662	+	230	56752065	-	syc2056_d	-	transcription regulator
2058	 57.21	0	2209866..2210510	+	214	56752066	-	syc2057_d	-	hypothetical protein
2059	 56.11	0	2210485..2211507	+	340	56752067	-	syc2058_d	-	hypothetical protein
2060	 57.69	0	2211511..2212212	+	233	56752068	-	syc2059_d	-	hypothetical protein
2061	 59.29	0	2212179..2212544	+	121	56752069	-	syc2060_d	-	hypothetical protein
2062	 59.68	0	2212521..2213636	-	371	56752070	-	syc2061_c	-	hypothetical protein
2063	 59.60	0	2214008..2214700	-	230	56752071	-	syc2062_c	-	hypothetical protein
2064	 57.34	0	2214722..2215933	-	403	56752072	norA	syc2063_c	-	multidrug-efflux transporter quinolene resistance protein NorA
2065	 58.42	0	2216026..2216607	+	193	56752073	-	syc2064_d	-	hypothetical protein
2066	 55.38	0	2216730..2217482	+	250	56752074	cpcG	syc2065_d	-	phycobilisome rod-core linker polypeptide
2067	 58.85	0	2217645..2219231	-	528	56752075	pgi	syc2066_c	-	glucose-6-phosphate isomerase
2068	 57.16	0	2219354..2220415	-	353	56752076	rfbW	syc2067_c	-	glycosyltransferase
2069	 56.59	0	2220430..2221173	-	247	56752077	-	syc2068_c	-	glycosly transferase
2070	 55.98	0	2221176..2222579	-	467	56752078	-	syc2069_c	-	glycosyltransferase
2071	 57.55	0	2222582..2223667	-	361	56752079	rfaG	syc2070_c	-	glycosyltransferase
2072	 59.56	0	2223772..2224644	+	290	56752080	-	syc2071_d	-	hypothetical protein
2073	 54.55	0	2224809..2225270	+	153	56752081	-	syc2072_d	-	hypothetical protein
2074	 56.64	0	2225327..2226652	+	441	56752082	nusA	syc2073_d	-	transcription elongation factor NusA
2075	 60.88	+1	2226649..2226942	+	97	56752083	-	syc2074_d	-	hypothetical protein
2076	 59.72	0	2227093..2230185	+	1030	56752084	infB	syc2075_d	-	translation initiation factor IF-2
2077	 56.55	0	2230268..2231137	+	289	56752085	-	syc2076_d	-	hypothetical protein
2078	 56.10	0	2231201..2231446	-	81	56752086	-	syc2077_c	-	hypothetical protein
2079	 58.50	0	2231660..2231953	-	97	56752087	-	syc2078_c	-	hypothetical protein
2080	 52.50	0	2232108..2232227	+	39	56752088	psbX	syc2079_d	-	photosystem II PsbX protein
2081	 60.43	+1	2232345..2233178	+	277	56752089	ycf66	syc2080_d	-	hypothetical protein
2082	 60.61	+1	2233187..2233780	+	197	56752090	-	syc2081_d	-	hypothetical protein
2083	 58.33	0	2233777..2234304	+	175	56752091	-	syc2082_d	-	hypothetical protein
2084	 58.82	0	2234301..2235524	-	407	56752092	spoIID	syc2083_c	-	stage II sporulation protein D
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.