IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
155	 53.83	0	168423..169544	+	373	56750164	-	syc0155_d	-	endo-1-beta-xylanase
156	 46.68	-2	169477..170712	+	411	56750165	-	syc0156_d	-	hypothetical protein
157	 42.96	-2	170730..172952	+	740	56750166	-	syc0157_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
158	 53.10	0	173280..174650	-	456	56750167	-	syc0158_c	-	hypothetical protein
159	 53.49	0	174799..175056	+	85	56750168	-	syc0159_d	-	hypothetical protein
160	 54.05	0	175074..175493	-	139	56750169	-	syc0160_c	-	hypothetical protein
161	 55.90	0	175490..177253	-	587	56750170	-	syc0161_c	-	hypothetical protein
162	 55.63	0	177381..178295	-	304	56750171	-	syc0162_c	-	histone deacetylase/AcuC/AphA family protein
163	 49.26	-1	178817..182884	+	1355	56750172	-	syc0163_d	-	alkaline phosphatase
164	 56.40	0	183108..184646	-	512	56750173	comM	syc0164_c	-	competence protein ComM-like protein
165	 54.26	0	184692..185078	+	128	56750174	-	syc0165_d	-	protein kinase C inhibitor
166	 56.51	0	185180..186262	+	360	56750175	psbAII	syc0166_d	-	photosystem II D1 protein
167	 58.54	0	186428..187141	-	237	56750176	-	syc0167_c	-	carbonic anhydrase
168	 57.49	0	187120..187947	-	275	56750177	-	syc0168_c	-	hypothetical protein
169	 57.58	0	188040..189173	+	377	56750178	-	syc0169_d	-	hypothetical protein
170	 55.29	0	189261..189515	+	84	56750179	-	syc0170_d	-	hypothetical protein
171	 55.31	0	189517..190203	-	228	56750180	-	syc0171_c	-	hypothetical protein
172	 51.27	-1	190489..191001	+	170	56750181	ppa	syc0172_d	-	inorganic pyrophosphatase
173	 45.72	-2	191088..193226	-	712	56750182	-	syc0173_c	-	hypothetical protein
174	 48.32	-1	194189..194575	-	128	56750183	-	syc0174_c	-	ABC transporter
175	 51.86	-1	194583..196115	-	510	56750184	-	syc0175_c	-	ABC transporter ATP binding protein
176	 54.26	0	196197..197921	-	574	56750185	-	syc0176_c	-	high affinity sulfate transporter
177	 56.68	0	197964..199325	-	453	56750186	accC	syc0177_c	-	acetyl-CoA carboxylase biotin carboxylase subunit
178	 57.57	0	199633..200874	+	413	56750187	-	syc0178_d	-	hypothetical protein
179	 53.46	0	200921..203215	-	764	56750188	-	syc0179_c	-	GTP pyrophosphokinase
180	 57.70	0	203660..204094	+	144	56750189	-	syc0180_d	-	hypothetical protein
181	 57.47	0	204294..204815	+	173	56750190	-	syc0181_d	-	hypothetical protein
182	 58.15	0	204886..206517	+	543	56750191	rluA	syc0182_d	-	ribosomal large subunit pseudouridine synthase D
183	 48.71	-1	206818..207513	+	231	56750192	-	syc0183_d	-	hydrogenase accessory protein
184	 51.25	-1	207668..211240	-	1190	56750193	metH	syc0184_c	-	5-methyltetrahydrofolate--homocysteine methyltransferase
185	 56.76	0	211273..212595	+	440	56750194	-	syc0185_d	-	cation transporter
186	 57.67	0	212963..213562	-	199	56750195	recR	syc0186_c	-	recombination protein RecR
187	 57.44	0	213808..214143	-	111	56750196	-	syc0187_c	-	hypothetical protein
188	 57.75	0	214171..215538	-	455	56750197	-	syc0188_c	-	cytochrome P450
189	 55.70	0	215597..216508	+	303	56750198	menA	syc0189_d	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
190	 50.57	-1	216650..217438	+	262	56750199	-	syc0190_d	-	hypothetical protein
191	 53.48	0	217697..218113	-	138	56750200	-	syc0191_c	-	hypothetical protein
192	 54.94	0	218643..219128	-	161	56750201	-	syc0192_c	-	hypothetical protein
193	 53.17	0	219212..219715	-	167	56750202	-	syc0193_c	-	hypothetical protein
194	 56.83	0	219748..221058	-	436	56750203	-	syc0194_c	-	transcription regulator
195	 55.39	0	221301..222506	+	401	56750204	-	syc0195_d	-	hypothetical protein
196	 54.55	0	222922..223713	+	263	56750205	-	syc0196_d	-	hypothetical protein
197	 44.17	-2	224030..225940	+	636	56750206	-	syc0197_d	-	hypothetical protein
198	 49.80	-1	225956..229453	+	1165	56750207	phy	syc0198_d	-	phytochrome
199	 48.90	-1	229450..229905	+	151	56750208	-	syc0199_d	-	CheY family two-component response regulator
200	 45.05	-2	229902..232691	+	929	56750209	-	syc0200_d	-	two-component response regulator
201	 52.30	0	232717..234213	-	498	56750210	-	syc0201_c	-	putative export protein
202	 58.00	0	234720..235388	-	222	56750211	-	syc0202_c	-	hypothetical protein
203	 58.24	0	235638..237608	-	656	56750212	-	syc0203_c	-	acetyl-CoA synthetase
204	 58.68	0	237614..238414	+	266	56750213	-	syc0204_d	-	hypothetical protein
205	 56.33	0	238747..239433	+	228	56750214	-	syc0205_d	-	hypothetical protein
206	 55.42	0	239786..240781	+	331	56750215	ldhA	syc0206_d	-	D-lactate dehydrogenase
207	 50.96	-1	240875..241186	-	103	56750216	ndhE	syc0207_c	-	NADH dehydrogenase subunit K
208	 54.46	0	241205..241810	-	201	56750217	ndhG	syc0208_c	-	NADH dehydrogenase subunit J
209	 55.99	0	241814..242422	-	202	56750218	ndhI	syc0209_c	-	NADH dehydrogenase subunit I
210	 56.66	0	242465..243583	-	372	56750219	ndhA	syc0210_c	-	NADH dehydrogenase subunit H
211	 55.77	0	243798..244889	-	363	56750220	-	syc0211_c	-	GDP-mannose 46-dehydratase
212	 55.38	0	244959..245924	-	321	56750221	-	syc0212_c	-	hypothetical protein
213	 55.09	0	246161..246739	+	192	56750222	def	syc0213_d	-	peptide deformylase
214	 55.90	0	246827..247021	+	64	56750223	-	syc0214_d	-	hypothetical protein
215	 57.16	0	247086..247937	+	283	56750224	-	syc0215_d	-	hypothetical protein
216	 52.17	0	248085..252395	-	1436	56750225	-	syc0216_c	-	hypothetical protein
217	 51.52	-1	252457..252621	-	54	56750226	-	syc0217_c	-	hypothetical protein
218	 52.64	0	252614..253540	-	308	56750227	-	syc0218_c	-	hypothetical protein
219	 57.11	0	253830..254624	-	264	56750228	-	syc0219_c	-	branched-chain amino acid aminotransferase
220	 58.23	0	254621..256018	-	465	56750229	trpE	syc0220_c	-	anthranilate synthetase alpha-subunit
221	 60.34	+1	256015..256710	-	231	56750230	-	syc0221_c	-	transcription regulator
222	 57.65	0	256710..257330	-	206	56750231	-	syc0222_c	-	hypothetical protein
223	 56.50	0	257335..257511	-	58	56750232	-	syc0223_c	-	CAB/ELIP/HLIP superfamily protein
224	 57.14	0	257726..258292	-	188	56750233	-	syc0224_c	-	hypothetical protein
225	 57.42	0	258295..258921	-	208	56750234	-	syc0225_c	-	hypothetical protein
226	 56.23	0	259241..259633	-	130	56750235	-	syc0226_c	-	hypothetical protein
227	 58.58	0	260107..263568	-	1153	56750236	-	syc0227_c	-	transcription-repair coupling factor
228	 52.06	0	263649..265010	-	453	56750237	dnaB	syc0228_c	-	replicative DNA helicase
229	 57.07	0	265212..267971	+	919	56750238	-	syc0229_d	-	putative helicase
230	 57.50	0	268003..268722	-	239	56750239	fpg	syc0230_c	-	formamidopyrimidine-DNA glycosylase
231	 55.70	0	268960..269187	-	75	56750240	psaE	syc0231_c	-	photosystem I reaction center subunit IV
232	 58.33	0	269367..270386	+	339	56750241	-	syc0232_d	-	hypothetical protein
233	 56.43	0	270504..271460	+	318	56750242	-	syc0233_d	-	hypothetical protein
234	 60.19	+1	271427..271966	-	179	56750243	-	syc0234_c	-	pyrimidine regulatory protein PyrR
235	 56.69	0	272032..272883	-	283	56750244	mntB	syc0235_c	-	manganese transport system membrane protein MntB
236	 59.49	0	272890..273627	-	245	56750245	mntA	syc0236_c	-	manganese transport system ATP-binding protein MntA
237	 60.69	+1	273686..274723	+	345	56750246	mntC	syc0237_d	-	Mn transporter MntC
238	 58.17	0	274817..276217	+	466	56750247	-	syc0238_d	-	tRNA (uracil-5-)-methyltransferase Gid
239	 56.53	0	276383..278266	+	627	56750248	ftsH	syc0239_d	-	ATP-dependent Zn protease
240	 57.17	0	278367..280166	-	599	56750249	aspS	syc0240_c	-	aspartyl-tRNA synthetase
241	 55.98	0	280573..282144	+	523	56750250	-	syc0241_d	-	ATP-binding protein of ABC transporter
242	 54.40	0	282204..282578	+	124	56750251	-	syc0242_d	-	hypothetical protein
243	 53.91	0	282753..283724	-	323	56750252	-	syc0243_c	-	ndhF3 operon transcriptional regulator
244	 57.13	0	283795..284727	-	310	56750253	-	syc0244_c	-	hypothetical protein
245	 56.41	0	284724..285737	-	337	56750254	trpS	syc0245_c	-	tryptophanyl-tRNA synthetase
246	 55.76	0	285804..286619	-	271	56750255	-	syc0246_c	-	hypothetical protein
247	 57.22	0	286718..287278	+	186	56750256	-	syc0247_d	-	hypothetical protein
248	 58.29	0	287356..288966	+	536	56750257	-	syc0248_d	-	ABC transporter ATP-binding protein
249	 51.12	-1	289062..289640	+	192	56750258	-	syc0249_d	-	hypothetical protein
250	 53.88	0	289650..290048	+	132	56750259	-	syc0250_d	-	hypothetical protein
251	 51.94	0	290074..290562	-	162	56750260	-	syc0251_c	-	hypothetical protein
252	 58.44	0	290659..292080	-	473	56750261	recQ	syc0252_c	-	ATP-dependent DNA helicase RecQ
253	 55.26	0	292138..292707	-	189	56750262	-	syc0253_c	-	hypothetical protein
254	 54.41	0	292946..293908	+	320	56750263	-	syc0254_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.