IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1935	 59.11	0	2073163..2074392	-	409	56751943	spt	syc1934_c	-	alanine--glyoxylate aminotransferase
1936	 58.74	0	2074379..2075311	-	310	56751944	-	syc1935_c	-	hypothetical protein
1937	 58.82	0	2075401..2075910	-	169	56751945	apcF	syc1936_c	-	phycobilisome core component
1938	 51.23	-1	2075946..2076230	+	94	56751946	-	syc1937_d	-	hypothetical protein
1939	 56.12	0	2076304..2077725	+	473	56751947	glnA	syc1938_d	-	glutamate--ammonia ligase
1940	 55.35	0	2077803..2078297	+	164	56751948	-	syc1939_d	-	hypothetical protein
1941	 50.48	-1	2079387..2080646	+	419	56751949	-	syc1940_d	-	hypothetical protein
1942	 44.08	-2	2080676..2082889	+	737	56751950	-	syc1941_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
1943	 46.55	-2	2083008..2084051	-	347	56751951	-	syc1942_c	-	hydrolase
1944	 51.80	-1	2084273..2085133	-	286	56751952	ycf38	syc1943_c	-	ABC-2 type transport system permease protein
1945	 57.77	0	2085185..2086207	-	340	56751953	-	syc1944_c	-	ABC transporter ATP-binding protein
1946	 51.82	-1	2086304..2086714	-	136	56751954	-	syc1945_c	-	hypothetical protein
1947	 58.63	0	2087174..2088007	+	277	56751955	-	syc1946_d	-	hypothetical protein
1948	 59.71	0	2088013..2088501	+	162	56751956	-	syc1947_d	-	hypothetical protein
1949	 59.46	0	2088860..2090122	-	420	56751957	trpB	syc1948_c	-	tryptophan synthase subunit beta
1950	 59.06	0	2090116..2090562	+	148	56751958	sui1	syc1949_d	-	translation initiation factor Sui1
1951	 53.98	0	2090535..2090999	-	154	56751959	-	syc1950_c	-	hypothetical protein
1952	 45.20	-2	2091378..2091731	-	117	56751960	-	syc1951_c	-	hypothetical protein
1953	 56.48	0	2092288..2092719	-	143	56751961	-	syc1952_c	-	cytidine deaminase
1954	 40.36	-2	2092817..2093428	-	203	56751962	-	syc1953_c	-	glutathione S-transferase
1955	 35.28	-2	2094071..2095096	-	341	56751963	-	syc1954_c	-	hypothetical protein
1956	 58.57	0	2096467..2100453	-	1328	56751964	chlH	syc1955_c	-	magnesium chelatase
1957	 58.52	0	2100743..2101564	+	273	56751965	dapB	syc1956_d	-	dihydrodipicolinate reductase
1958	 59.36	0	2101574..2102257	+	227	56751966	-	syc1957_d	-	hypothetical protein
1959	 60.76	+1	2102322..2103371	+	349	56751967	amiA	syc1958_d	-	N-acetylmuramoyl-L-alanine amidase
1960	 58.88	0	2103509..2104060	+	183	56751968	-	syc1959_d	-	hypothetical protein
1961	 61.13	+1	2104063..2105490	-	475	56751969	-	syc1960_c	-	phosphoglucomutase and phosphomannomutase
1962	 58.95	0	2105775..2107847	+	690	56751970	slt	syc1961_d	-	soluble lytic transglycosylase
1963	 46.67	-2	2107880..2108464	-	194	56751971	-	syc1962_c	-	hypothetical protein
1964	 53.58	0	2108472..2108876	-	134	56751972	-	syc1963_c	-	iron-sulfur cluster binding protein
1965	 56.08	0	2108949..2109524	+	191	56751973	trxA	syc1964_d	-	thioredoxin
1966	 53.85	0	2109684..2109878	-	64	56751974	nblA	syc1965_c	-	phycobilisome degradation protein NblA
1967	 58.27	0	2110226..2110630	+	134	56751975	-	syc1966_d	-	hypothetical protein
1968	 58.71	0	2110627..2111028	-	133	56751976	-	syc1967_c	-	hypothetical protein
1969	 61.42	+1	2111151..2112122	+	323	56751977	bcp	syc1968_d	-	acetylpolyamine aminohydolase
1970	 61.70	+1	2112183..2113229	+	348	56751978	trpD	syc1969_d	-	anthranilate phosphoribosyltransferase
1971	 58.08	0	2113295..2114470	+	391	56751979	carA	syc1970_d	-	carbamoyl phosphate synthase small subunit
1972	 50.38	-1	2114521..2114913	+	130	56751980	-	syc1971_d	-	anti-sigma f factor antagonist
1973	 59.00	0	2115033..2115332	+	99	56751981	-	syc1972_d	-	hypothetical protein
1974	 60.77	+1	2115374..2116933	+	519	56751982	-	syc1973_d	-	tRNA/rRNA methyltransferase
1975	 52.08	0	2117049..2117336	+	95	56751983	-	syc1974_d	-	hypothetical protein
1976	 56.25	0	2117436..2118875	+	479	56751984	gatA	syc1975_d	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1977	 57.84	0	2118880..2119740	+	286	56751985	-	syc1976_d	-	hypothetical protein
1978	 56.14	0	2119902..2120756	+	284	56751986	-	syc1977_d	-	hypothetical protein
1979	 56.58	0	2121040..2122239	-	399	56751987	sasA	syc1978_c	-	adaptive-response sensory kinase
1980	 55.62	0	2122305..2123300	-	331	56751988	kprS	syc1979_c	-	ribose-phosphate pyrophosphokinase
1981	 57.46	0	2123529..2124071	+	180	56751989	-	syc1980_d	-	hypothetical protein
1982	 61.50	+1	2124098..2125006	-	302	56751990	xylR	syc1981_c	-	xylose repressor
1983	 59.04	0	2125131..2126114	+	327	56751991	fmt	syc1982_d	-	methionyl-tRNA formyltransferase
1984	 54.84	0	2126115..2127890	-	591	56751992	-	syc1983_c	-	ATP-binding protein of ABC transporter
1985	 53.66	0	2127945..2128313	-	122	56751993	-	syc1984_c	-	hypothetical protein
1986	 49.05	-1	2128577..2128945	+	122	56751994	-	syc1985_d	-	hypothetical protein
1987	 50.25	-1	2128980..2130167	+	395	56751995	cynA	syc1986_d	-	sulfonate/nitrate transport system substrate-binding protein
1988	 48.86	-1	2130177..2130968	+	263	56751996	cynB	syc1987_d	-	sulfonate/nitrate transport system permease protein
1989	 52.41	0	2130972..2131841	+	289	56751997	cynD	syc1988_d	-	sulfonate/nitrate transport system ATP-binding protein
1990	 46.94	-2	2131852..2132292	+	146	56751998	cynS	syc1989_d	-	cyanate hydratase
1991	 58.52	0	2132509..2132913	+	134	56751999	-	syc1990_d	-	hypothetical protein
1992	 61.25	+1	2132956..2133195	-	79	56752000	-	syc1991_c	-	NAD-reducing hydrogenase gamma
1993	 57.29	0	2133207..2134091	-	294	56752001	rfbA	syc1992_c	-	glucose-1-phosphate thymidylyltransferase
1994	 52.51	0	2134088..2135161	-	357	56752002	rfbB	syc1993_c	-	dTDP-glucose 4,6-dehydratase
1995	 54.83	0	2135158..2136027	-	289	56752003	rfbD	syc1994_c	-	dTDP-6-deoxy-L-mannose-dehydrogenase
1996	 55.43	0	2136024..2136575	-	183	56752004	rfbC	syc1995_c	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1997	 57.61	0	2136635..2137561	+	308	56752005	-	syc1996_d	-	hypothetical protein
1998	 48.57	-1	2137571..2139565	-	664	56752006	-	syc1997_c	-	hypothetical protein
1999	 54.17	0	2139794..2140177	-	127	56752007	-	syc1998_c	-	hypothetical protein
2000	 50.25	-1	2140422..2140823	-	133	56752008	-	syc1999_c	-	hypothetical protein
2001	 57.93	0	2140870..2142162	-	430	56752009	cupA	syc2000_c	-	protein involved in low CO2-inducible high affinity CO2 uptake
2002	 59.86	0	2142211..2143752	-	513	56752010	ndhD3	syc2001_c	-	NADH dehydrogenase subunit 4
2003	 59.27	0	2143764..2145602	-	612	56752011	ndhF3	syc2002_c	-	NAD(P)H-quinone oxidoreductase subunit F
2004	 59.28	0	2145853..2147151	-	432	56752012	thrA	syc2003_c	-	homoserine dehydrogenase
2005	 53.88	0	2147447..2148361	+	304	56752013	-	syc2004_d	-	hypothetical protein
2006	 56.51	0	2148716..2149030	-	104	56752014	-	syc2005_c	-	hypothetical protein
2007	 58.85	0	2149116..2149883	-	255	56752015	hisF	syc2006_c	-	imidazole glycerol phosphate synthase subunit HisF
2008	 52.24	0	2150041..2150241	+	66	56752016	-	syc2007_d	-	hypothetical protein
2009	 56.45	0	2150273..2151349	+	358	56752017	-	syc2008_d	-	anion transporting ATPase
2010	 53.42	0	2151506..2152381	+	291	56752018	chlG	syc2009_d	-	bacteriochlorophyll/chlorophyll a synthase
2011	 47.92	-1	2152436..2153107	-	223	56752019	-	syc2010_c	-	hypothetical protein
2012	 58.37	0	2153457..2155445	+	662	56752020	fus	syc2011_d	-	elongation factor G
2013	 55.52	0	2155525..2156475	+	316	56752021	wcaA	syc2012_d	-	glycosyl transferase
2014	 54.45	0	2156604..2158994	-	796	56752022	-	syc2013_c	-	putative phosphoketolase
2015	 58.06	0	2159436..2160458	+	340	56752023	ackA	syc2014_d	-	acetate kinase
2016	 57.43	0	2160467..2161105	+	212	56752024	-	syc2015_d	-	phosphoglycerate mutase
2017	 58.99	0	2161482..2161898	-	138	56752025	-	syc2016_c	-	hypothetical protein
2018	 56.32	0	2161965..2163017	-	350	56752026	-	syc2017_c	-	ribosome-associated GTPase
2019	 60.71	+1	2163014..2163265	-	83	56752027	-	syc2018_c	-	hypothetical protein
2020	 57.38	0	2163262..2164392	-	376	56752028	dnaJ	syc2019_c	-	DnaJ protein
2021	 54.83	0	2164534..2166501	-	655	56752029	dnaK	syc2020_c	-	molecular chaperone DnaK
2022	 55.66	0	2166606..2167250	-	214	56752030	grpE	syc2021_c	-	heat shock protein GrpE
2023	 57.02	0	2167506..2169506	+	666	56752031	pilB	syc2022_d	-	type IV pilus assembly protein PilB
2024	 52.53	0	2169577..2170665	+	362	56752032	pilT1	syc2023_d	-	twitching motility protein PilT
2025	 48.99	-1	2170690..2171922	+	410	56752033	pilC	syc2024_d	-	type IV pilus assembly protein PilC
2026	 58.20	0	2171928..2172482	+	184	56752034	-	syc2025_d	-	hypothetical protein
2027	 59.05	0	2172447..2173694	-	415	56752035	-	syc2026_c	-	hypothetical protein
2028	 56.59	0	2173721..2174752	+	343	56752036	-	syc2027_d	-	tRNA-dihydrouridine synthase A
2029	 44.10	-2	2174816..2175103	+	95	56752037	-	syc2028_d	-	hypothetical protein
2030	 57.58	0	2175227..2176228	-	333	161621813	pheS	syc2029_c	-	phenylalanyl-tRNA synthetase subunit alpha
2031	 60.23	+1	2176364..2177140	+	258	56752039	surE	syc2030_d	-	stationary phase survival protein SurE
2032	 57.52	0	2177211..2178446	+	411	56752040	crtL	syc2031_d	-	lycopene cyclase
2033	 52.59	0	2178568..2178837	+	89	56752041	-	syc2032_d	-	hypothetical protein
2034	 58.56	0	2178862..2179527	+	221	56752042	-	syc2033_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.