IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1918	 53.22	0	2058635..2058976	+	113	56751926	-	syc1917_d	-	hypothetical protein
1919	 58.81	0	2058997..2059950	-	317	56751927	natD	syc1918_c	-	integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD
1920	 58.20	0	2059934..2061079	+	381	56751928	-	syc1919_d	-	hypothetical protein
1921	 53.41	0	2061183..2062283	+	366	56751929	idiA	syc1920_d	-	iron(III) transport system substrate-binding protein
1922	 56.19	0	2062526..2063155	-	209	56751930	-	syc1921_c	-	hypothetical protein
1923	 56.86	0	2063252..2063812	-	186	56751931	-	syc1922_c	-	hypothetical protein
1924	 57.85	0	2063809..2064069	-	86	56751932	-	syc1923_c	-	hypothetical protein
1925	 51.41	-1	2064304..2064834	+	176	56751933	dpsA	syc1924_d	-	starvation induced DNA binding protein
1926	 57.30	0	2065033..2065491	-	152	56751934	fur	syc1925_c	-	ferric uptake regulation protein
1927	 57.41	0	2065547..2065870	+	107	56751935	-	syc1926_d	-	hypothetical protein
1928	 51.87	-1	2065965..2068349	-	794	56751936	pcrA	syc1927_c	-	ATP-dependent helicase PcrA
1929	 54.53	0	2068562..2069014	+	150	56751937	-	syc1928_d	-	hypothetical protein
1930	 56.72	0	2069173..2069544	+	123	56751938	-	syc1929_d	-	hypothetical protein
1931	 54.86	0	2069661..2070041	+	126	56751939	-	syc1930_d	-	hypothetical protein
1932	 58.87	0	2070038..2071423	-	461	56751940	-	syc1931_c	-	cell death suppressor protein Lls1-like protein
1933	 54.55	0	2071505..2072032	-	175	56751941	-	syc1932_c	-	hypothetical protein
1934	 44.60	-2	2072494..2073150	-	218	56751942	-	syc1933_c	-	hypothetical protein
1935	 59.11	0	2073163..2074392	-	409	56751943	spt	syc1934_c	-	alanine--glyoxylate aminotransferase
1936	 58.74	0	2074379..2075311	-	310	56751944	-	syc1935_c	-	hypothetical protein
1937	 58.82	0	2075401..2075910	-	169	56751945	apcF	syc1936_c	-	phycobilisome core component
1938	 51.23	-1	2075946..2076230	+	94	56751946	-	syc1937_d	-	hypothetical protein
1939	 56.12	0	2076304..2077725	+	473	56751947	glnA	syc1938_d	-	glutamate--ammonia ligase
1940	 55.35	0	2077803..2078297	+	164	56751948	-	syc1939_d	-	hypothetical protein
1941	 50.48	-1	2079387..2080646	+	419	56751949	-	syc1940_d	-	hypothetical protein
1942	 44.08	-2	2080676..2082889	+	737	56751950	-	syc1941_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
1943	 46.55	-2	2083008..2084051	-	347	56751951	-	syc1942_c	-	hydrolase
1944	 51.80	-1	2084273..2085133	-	286	56751952	ycf38	syc1943_c	-	ABC-2 type transport system permease protein
1945	 57.77	0	2085185..2086207	-	340	56751953	-	syc1944_c	-	ABC transporter ATP-binding protein
1946	 51.82	-1	2086304..2086714	-	136	56751954	-	syc1945_c	-	hypothetical protein
1947	 58.63	0	2087174..2088007	+	277	56751955	-	syc1946_d	-	hypothetical protein
1948	 59.71	0	2088013..2088501	+	162	56751956	-	syc1947_d	-	hypothetical protein
1949	 59.46	0	2088860..2090122	-	420	56751957	trpB	syc1948_c	-	tryptophan synthase subunit beta
1950	 59.06	0	2090116..2090562	+	148	56751958	sui1	syc1949_d	-	translation initiation factor Sui1
1951	 53.98	0	2090535..2090999	-	154	56751959	-	syc1950_c	-	hypothetical protein
1952	 45.20	-2	2091378..2091731	-	117	56751960	-	syc1951_c	-	hypothetical protein
1953	 56.48	0	2092288..2092719	-	143	56751961	-	syc1952_c	-	cytidine deaminase
1954	 40.36	-2	2092817..2093428	-	203	56751962	-	syc1953_c	-	glutathione S-transferase
1955	 35.28	-2	2094071..2095096	-	341	56751963	-	syc1954_c	-	hypothetical protein
1956	 58.57	0	2096467..2100453	-	1328	56751964	chlH	syc1955_c	-	magnesium chelatase
1957	 58.52	0	2100743..2101564	+	273	56751965	dapB	syc1956_d	-	dihydrodipicolinate reductase
1958	 59.36	0	2101574..2102257	+	227	56751966	-	syc1957_d	-	hypothetical protein
1959	 60.76	+1	2102322..2103371	+	349	56751967	amiA	syc1958_d	-	N-acetylmuramoyl-L-alanine amidase
1960	 58.88	0	2103509..2104060	+	183	56751968	-	syc1959_d	-	hypothetical protein
1961	 61.13	+1	2104063..2105490	-	475	56751969	-	syc1960_c	-	phosphoglucomutase and phosphomannomutase
1962	 58.95	0	2105775..2107847	+	690	56751970	slt	syc1961_d	-	soluble lytic transglycosylase
1963	 46.67	-2	2107880..2108464	-	194	56751971	-	syc1962_c	-	hypothetical protein
1964	 53.58	0	2108472..2108876	-	134	56751972	-	syc1963_c	-	iron-sulfur cluster binding protein
1965	 56.08	0	2108949..2109524	+	191	56751973	trxA	syc1964_d	-	thioredoxin
1966	 53.85	0	2109684..2109878	-	64	56751974	nblA	syc1965_c	-	phycobilisome degradation protein NblA
1967	 58.27	0	2110226..2110630	+	134	56751975	-	syc1966_d	-	hypothetical protein
1968	 58.71	0	2110627..2111028	-	133	56751976	-	syc1967_c	-	hypothetical protein
1969	 61.42	+1	2111151..2112122	+	323	56751977	bcp	syc1968_d	-	acetylpolyamine aminohydolase
1970	 61.70	+1	2112183..2113229	+	348	56751978	trpD	syc1969_d	-	anthranilate phosphoribosyltransferase
1971	 58.08	0	2113295..2114470	+	391	56751979	carA	syc1970_d	-	carbamoyl phosphate synthase small subunit
1972	 50.38	-1	2114521..2114913	+	130	56751980	-	syc1971_d	-	anti-sigma f factor antagonist
1973	 59.00	0	2115033..2115332	+	99	56751981	-	syc1972_d	-	hypothetical protein
1974	 60.77	+1	2115374..2116933	+	519	56751982	-	syc1973_d	-	tRNA/rRNA methyltransferase
1975	 52.08	0	2117049..2117336	+	95	56751983	-	syc1974_d	-	hypothetical protein
1976	 56.25	0	2117436..2118875	+	479	56751984	gatA	syc1975_d	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1977	 57.84	0	2118880..2119740	+	286	56751985	-	syc1976_d	-	hypothetical protein
1978	 56.14	0	2119902..2120756	+	284	56751986	-	syc1977_d	-	hypothetical protein
1979	 56.58	0	2121040..2122239	-	399	56751987	sasA	syc1978_c	-	adaptive-response sensory kinase
1980	 55.62	0	2122305..2123300	-	331	56751988	kprS	syc1979_c	-	ribose-phosphate pyrophosphokinase
1981	 57.46	0	2123529..2124071	+	180	56751989	-	syc1980_d	-	hypothetical protein
1982	 61.50	+1	2124098..2125006	-	302	56751990	xylR	syc1981_c	-	xylose repressor
1983	 59.04	0	2125131..2126114	+	327	56751991	fmt	syc1982_d	-	methionyl-tRNA formyltransferase
1984	 54.84	0	2126115..2127890	-	591	56751992	-	syc1983_c	-	ATP-binding protein of ABC transporter
1985	 53.66	0	2127945..2128313	-	122	56751993	-	syc1984_c	-	hypothetical protein
1986	 49.05	-1	2128577..2128945	+	122	56751994	-	syc1985_d	-	hypothetical protein
1987	 50.25	-1	2128980..2130167	+	395	56751995	cynA	syc1986_d	-	sulfonate/nitrate transport system substrate-binding protein
1988	 48.86	-1	2130177..2130968	+	263	56751996	cynB	syc1987_d	-	sulfonate/nitrate transport system permease protein
1989	 52.41	0	2130972..2131841	+	289	56751997	cynD	syc1988_d	-	sulfonate/nitrate transport system ATP-binding protein
1990	 46.94	-2	2131852..2132292	+	146	56751998	cynS	syc1989_d	-	cyanate hydratase
1991	 58.52	0	2132509..2132913	+	134	56751999	-	syc1990_d	-	hypothetical protein
1992	 61.25	+1	2132956..2133195	-	79	56752000	-	syc1991_c	-	NAD-reducing hydrogenase gamma
1993	 57.29	0	2133207..2134091	-	294	56752001	rfbA	syc1992_c	-	glucose-1-phosphate thymidylyltransferase
1994	 52.51	0	2134088..2135161	-	357	56752002	rfbB	syc1993_c	-	dTDP-glucose 4,6-dehydratase
1995	 54.83	0	2135158..2136027	-	289	56752003	rfbD	syc1994_c	-	dTDP-6-deoxy-L-mannose-dehydrogenase
1996	 55.43	0	2136024..2136575	-	183	56752004	rfbC	syc1995_c	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1997	 57.61	0	2136635..2137561	+	308	56752005	-	syc1996_d	-	hypothetical protein
1998	 48.57	-1	2137571..2139565	-	664	56752006	-	syc1997_c	-	hypothetical protein
1999	 54.17	0	2139794..2140177	-	127	56752007	-	syc1998_c	-	hypothetical protein
2000	 50.25	-1	2140422..2140823	-	133	56752008	-	syc1999_c	-	hypothetical protein
2001	 57.93	0	2140870..2142162	-	430	56752009	cupA	syc2000_c	-	protein involved in low CO2-inducible high affinity CO2 uptake
2002	 59.86	0	2142211..2143752	-	513	56752010	ndhD3	syc2001_c	-	NADH dehydrogenase subunit 4
2003	 59.27	0	2143764..2145602	-	612	56752011	ndhF3	syc2002_c	-	NAD(P)H-quinone oxidoreductase subunit F
2004	 59.28	0	2145853..2147151	-	432	56752012	thrA	syc2003_c	-	homoserine dehydrogenase
2005	 53.88	0	2147447..2148361	+	304	56752013	-	syc2004_d	-	hypothetical protein
2006	 56.51	0	2148716..2149030	-	104	56752014	-	syc2005_c	-	hypothetical protein
2007	 58.85	0	2149116..2149883	-	255	56752015	hisF	syc2006_c	-	imidazole glycerol phosphate synthase subunit HisF
2008	 52.24	0	2150041..2150241	+	66	56752016	-	syc2007_d	-	hypothetical protein
2009	 56.45	0	2150273..2151349	+	358	56752017	-	syc2008_d	-	anion transporting ATPase
2010	 53.42	0	2151506..2152381	+	291	56752018	chlG	syc2009_d	-	bacteriochlorophyll/chlorophyll a synthase
2011	 47.92	-1	2152436..2153107	-	223	56752019	-	syc2010_c	-	hypothetical protein
2012	 58.37	0	2153457..2155445	+	662	56752020	fus	syc2011_d	-	elongation factor G
2013	 55.52	0	2155525..2156475	+	316	56752021	wcaA	syc2012_d	-	glycosyl transferase
2014	 54.45	0	2156604..2158994	-	796	56752022	-	syc2013_c	-	putative phosphoketolase
2015	 58.06	0	2159436..2160458	+	340	56752023	ackA	syc2014_d	-	acetate kinase
2016	 57.43	0	2160467..2161105	+	212	56752024	-	syc2015_d	-	phosphoglycerate mutase
2017	 58.99	0	2161482..2161898	-	138	56752025	-	syc2016_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.