IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1870	 54.71	0	2020049..2020324	+	91	56751878	rpsS	syc1869_d	-	30S ribosomal protein S19
1871	 58.19	0	2020343..2020696	+	117	56751879	rplV	syc1870_d	-	50S ribosomal protein L22
1872	 56.60	0	2020721..2021455	+	244	56751880	rpsC	syc1871_d	-	30S ribosomal protein S3
1873	 58.28	0	2021464..2021892	+	142	56751881	rplP	syc1872_d	-	50S ribosomal protein L16
1874	 53.33	0	2021895..2022089	+	64	56751882	rpmC	syc1873_d	-	50S ribosomal protein L29
1875	 57.83	0	2022124..2022372	+	82	56751883	rpsQ	syc1874_d	-	30S ribosomal protein S17
1876	 55.46	0	2022384..2022749	+	121	56751884	rplN	syc1875_d	-	50S ribosomal protein L14
1877	 53.22	0	2022749..2023090	+	113	56751885	rplX	syc1876_d	-	50S ribosomal protein L24
1878	 55.93	0	2023133..2023672	+	179	56751886	rplE	syc1877_d	-	50S ribosomal protein L5
1879	 58.21	0	2023700..2024101	+	133	56751887	rpsH	syc1878_d	-	30S ribosomal protein S8
1880	 56.85	0	2024138..2024677	+	179	56751888	rplF	syc1879_d	-	50S ribosomal protein L6
1881	 59.23	0	2024677..2025039	+	120	56751889	rplR	syc1880_d	-	50S ribosomal protein L18
1882	 57.27	0	2025043..2025585	+	180	56751890	rpsE	syc1881_d	-	30S ribosomal protein S5
1883	 57.88	0	2025623..2026066	+	147	56751891	rplO	syc1882_d	-	50S ribosomal protein L15
1884	 55.53	0	2026188..2027507	+	439	56751892	secY	syc1883_d	-	preprotein translocase subunit SecY
1885	 56.68	0	2027507..2028067	+	186	56751893	adk	syc1884_d	-	adenylate kinase
1886	 49.12	-1	2028141..2028254	+	37	56751894	rpmJ	syc1885_d	-	50S ribosomal protein L36
1887	 58.73	0	2028409..2028786	+	125	56751895	rpsM	syc1886_d	-	30S ribosomal protein S13
1888	 59.80	0	2028856..2029248	+	130	56751896	rps11	syc1887_d	-	30S ribosomal protein S11
1889	 57.63	0	2029294..2030223	+	309	56751897	rpoA	syc1888_d	-	DNA-directed RNA polymerase subunit alpha
1890	 56.70	0	2030259..2030609	+	116	56751898	rplQ	syc1889_d	-	50S ribosomal protein L17
1891	 57.74	0	2030612..2031496	+	294	56751899	truA	syc1890_d	-	tRNA pseudouridine synthase A
1892	 54.61	0	2031512..2031967	+	151	56751900	rplM	syc1891_d	-	50S ribosomal protein L13
1893	 59.07	0	2031967..2032374	+	135	56751901	rpsI	syc1892_d	-	30S ribosomal protein S9
1894	 54.70	0	2032405..2032638	+	77	56751902	rpmE	syc1893_d	-	50S ribosomal protein L31
1895	 53.93	0	2032740..2033846	+	368	56751903	prfA	syc1894_d	-	peptide chain release factor 1
1896	 53.61	0	2033860..2034357	-	165	56751904	mrcA	syc1895_c	-	restriction endonuclease
1897	 57.49	0	2034482..2035702	+	406	56751905	alr	syc1896_d	-	alanine racemase
1898	 54.47	0	2035952..2036443	+	163	56751906	-	syc1897_d	-	hypothetical protein
1899	 47.65	-2	2036501..2039113	+	870	56751907	dnaE	syc1898_d	-	DNA polymerase III subunit alpha
1900	 50.13	-1	2039099..2040229	-	376	56751908	-	syc1899_c	-	hypothetical protein
1901	 55.44	0	2040243..2041355	-	370	56751909	-	syc1900_c	-	gamma-glutamyl kinase
1902	 56.07	0	2041484..2042125	+	213	56751910	-	syc1901_d	-	hypothetical protein
1903	 59.31	0	2042129..2043976	+	615	56751911	cya2	syc1902_d	-	guanylyl cyclase
1904	 51.49	-1	2044028..2044396	+	122	56751912	-	syc1903_d	-	hypothetical protein
1905	 56.03	0	2044375..2046057	+	560	56751913	-	syc1904_d	-	hypothetical protein
1906	 53.42	0	2046129..2047736	-	535	56751914	-	syc1905_c	-	hypothetical protein
1907	 56.83	0	2047876..2048607	+	243	56751915	-	syc1906_d	-	hypothetical protein
1908	 54.37	0	2048673..2049095	-	140	56751916	-	syc1907_c	-	hypothetical protein
1909	 60.47	+1	2049496..2050899	+	467	56751917	menF	syc1908_d	-	menaquinone-specific isochorismate synthase
1910	 60.99	+1	2050928..2051332	+	134	56751918	-	syc1909_d	-	hypothetical protein
1911	 58.36	0	2051320..2052957	-	545	56751919	-	syc1910_c	-	Na+/H+-exchanging protein
1912	 55.06	0	2053223..2053627	-	134	56751920	-	syc1911_c	-	hypothetical protein
1913	 59.30	0	2053712..2054512	-	266	56751921	-	syc1912_c	-	hypothetical protein
1914	 57.63	0	2054689..2055474	+	261	56751922	rnhA	syc1913_d	-	ribonuclease H
1915	 59.95	0	2055905..2057050	+	381	56751923	-	syc1914_d	-	hypothetical protein
1916	 55.71	0	2057103..2057540	+	145	56751924	-	syc1915_d	-	bacterioferritin comigratory protein
1917	 57.27	0	2057671..2058585	+	304	56751925	-	syc1916_d	-	putative lipid kinase
1918	 53.22	0	2058635..2058976	+	113	56751926	-	syc1917_d	-	hypothetical protein
1919	 58.81	0	2058997..2059950	-	317	56751927	natD	syc1918_c	-	integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD
1920	 58.20	0	2059934..2061079	+	381	56751928	-	syc1919_d	-	hypothetical protein
1921	 53.41	0	2061183..2062283	+	366	56751929	idiA	syc1920_d	-	iron(III) transport system substrate-binding protein
1922	 56.19	0	2062526..2063155	-	209	56751930	-	syc1921_c	-	hypothetical protein
1923	 56.86	0	2063252..2063812	-	186	56751931	-	syc1922_c	-	hypothetical protein
1924	 57.85	0	2063809..2064069	-	86	56751932	-	syc1923_c	-	hypothetical protein
1925	 51.41	-1	2064304..2064834	+	176	56751933	dpsA	syc1924_d	-	starvation induced DNA binding protein
1926	 57.30	0	2065033..2065491	-	152	56751934	fur	syc1925_c	-	ferric uptake regulation protein
1927	 57.41	0	2065547..2065870	+	107	56751935	-	syc1926_d	-	hypothetical protein
1928	 51.87	-1	2065965..2068349	-	794	56751936	pcrA	syc1927_c	-	ATP-dependent helicase PcrA
1929	 54.53	0	2068562..2069014	+	150	56751937	-	syc1928_d	-	hypothetical protein
1930	 56.72	0	2069173..2069544	+	123	56751938	-	syc1929_d	-	hypothetical protein
1931	 54.86	0	2069661..2070041	+	126	56751939	-	syc1930_d	-	hypothetical protein
1932	 58.87	0	2070038..2071423	-	461	56751940	-	syc1931_c	-	cell death suppressor protein Lls1-like protein
1933	 54.55	0	2071505..2072032	-	175	56751941	-	syc1932_c	-	hypothetical protein
1934	 44.60	-2	2072494..2073150	-	218	56751942	-	syc1933_c	-	hypothetical protein
1935	 59.11	0	2073163..2074392	-	409	56751943	spt	syc1934_c	-	alanine--glyoxylate aminotransferase
1936	 58.74	0	2074379..2075311	-	310	56751944	-	syc1935_c	-	hypothetical protein
1937	 58.82	0	2075401..2075910	-	169	56751945	apcF	syc1936_c	-	phycobilisome core component
1938	 51.23	-1	2075946..2076230	+	94	56751946	-	syc1937_d	-	hypothetical protein
1939	 56.12	0	2076304..2077725	+	473	56751947	glnA	syc1938_d	-	glutamate--ammonia ligase
1940	 55.35	0	2077803..2078297	+	164	56751948	-	syc1939_d	-	hypothetical protein
1941	 50.48	-1	2079387..2080646	+	419	56751949	-	syc1940_d	-	hypothetical protein
1942	 44.08	-2	2080676..2082889	+	737	56751950	-	syc1941_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
1943	 46.55	-2	2083008..2084051	-	347	56751951	-	syc1942_c	-	hydrolase
1944	 51.80	-1	2084273..2085133	-	286	56751952	ycf38	syc1943_c	-	ABC-2 type transport system permease protein
1945	 57.77	0	2085185..2086207	-	340	56751953	-	syc1944_c	-	ABC transporter ATP-binding protein
1946	 51.82	-1	2086304..2086714	-	136	56751954	-	syc1945_c	-	hypothetical protein
1947	 58.63	0	2087174..2088007	+	277	56751955	-	syc1946_d	-	hypothetical protein
1948	 59.71	0	2088013..2088501	+	162	56751956	-	syc1947_d	-	hypothetical protein
1949	 59.46	0	2088860..2090122	-	420	56751957	trpB	syc1948_c	-	tryptophan synthase subunit beta
1950	 59.06	0	2090116..2090562	+	148	56751958	sui1	syc1949_d	-	translation initiation factor Sui1
1951	 53.98	0	2090535..2090999	-	154	56751959	-	syc1950_c	-	hypothetical protein
1952	 45.20	-2	2091378..2091731	-	117	56751960	-	syc1951_c	-	hypothetical protein
1953	 56.48	0	2092288..2092719	-	143	56751961	-	syc1952_c	-	cytidine deaminase
1954	 40.36	-2	2092817..2093428	-	203	56751962	-	syc1953_c	-	glutathione S-transferase
1955	 35.28	-2	2094071..2095096	-	341	56751963	-	syc1954_c	-	hypothetical protein
1956	 58.57	0	2096467..2100453	-	1328	56751964	chlH	syc1955_c	-	magnesium chelatase
1957	 58.52	0	2100743..2101564	+	273	56751965	dapB	syc1956_d	-	dihydrodipicolinate reductase
1958	 59.36	0	2101574..2102257	+	227	56751966	-	syc1957_d	-	hypothetical protein
1959	 60.76	+1	2102322..2103371	+	349	56751967	amiA	syc1958_d	-	N-acetylmuramoyl-L-alanine amidase
1960	 58.88	0	2103509..2104060	+	183	56751968	-	syc1959_d	-	hypothetical protein
1961	 61.13	+1	2104063..2105490	-	475	56751969	-	syc1960_c	-	phosphoglucomutase and phosphomannomutase
1962	 58.95	0	2105775..2107847	+	690	56751970	slt	syc1961_d	-	soluble lytic transglycosylase
1963	 46.67	-2	2107880..2108464	-	194	56751971	-	syc1962_c	-	hypothetical protein
1964	 53.58	0	2108472..2108876	-	134	56751972	-	syc1963_c	-	iron-sulfur cluster binding protein
1965	 56.08	0	2108949..2109524	+	191	56751973	trxA	syc1964_d	-	thioredoxin
1966	 53.85	0	2109684..2109878	-	64	56751974	nblA	syc1965_c	-	phycobilisome degradation protein NblA
1967	 58.27	0	2110226..2110630	+	134	56751975	-	syc1966_d	-	hypothetical protein
1968	 58.71	0	2110627..2111028	-	133	56751976	-	syc1967_c	-	hypothetical protein
1969	 61.42	+1	2111151..2112122	+	323	56751977	bcp	syc1968_d	-	acetylpolyamine aminohydolase
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.