IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1839	 58.74	0	1987784..1988149	+	121	56751847	-	syc1838_d	-	hypothetical protein
1840	 59.20	0	1988180..1988728	-	182	56751848	rimM	syc1839_c	-	16S rRNA-processing protein
1841	 57.09	0	1988732..1990015	-	427	56751849	avtA	syc1840_c	-	valine--pyruvate transaminase
1842	 54.79	0	1990145..1990363	+	72	56751850	-	syc1841_d	-	hypothetical protein
1843	 54.05	0	1990413..1990967	+	184	56751851	-	syc1842_d	-	hypothetical protein
1844	 52.84	0	1991104..1991508	-	134	56751852	-	syc1843_c	-	hypothetical protein
1845	 57.76	0	1992271..1993629	+	452	56751853	-	syc1844_d	-	hypothetical protein
1846	 57.26	0	1993747..1994883	+	378	56751854	-	syc1845_d	-	hypothetical protein
1847	 57.02	0	1994940..1998101	+	1053	56751855	ppc	syc1846_d	-	phosphoenolpyruvate carboxylase
1848	 58.63	0	1998109..1998693	+	194	56751856	-	syc1847_d	-	hypothetical protein
1849	 57.65	0	1998790..1999953	+	387	56751857	recF	syc1848_d	-	recombination protein F
1850	 54.94	0	2000532..2000966	+	144	56751858	-	syc1849_d	-	S-adenosylmethionine decarboxylase proenzyme
1851	 50.72	-1	2001301..2001576	+	91	56751859	himA	syc1850_d	-	DNA binding protein HU
1852	 57.30	0	2002070..2004718	-	882	56751860	mutS	syc1851_c	-	DNA mismatch repair protein
1853	 57.76	0	2004888..2006291	-	467	56751861	-	syc1852_c	-	hypothetical protein
1854	 55.56	0	2006498..2006686	+	62	56751862	-	syc1853_d	-	photosystem II reaction center protein Z
1855	 58.97	0	2006696..2007241	+	181	56751863	ribH	syc1854_d	-	riboflavin synthase subunit beta
1856	 57.11	0	2007532..2008776	+	414	56751864	proA	syc1855_d	-	gamma-glutamyl phosphate reductase
1857	 58.51	0	2008783..2009775	+	330	56751865	-	syc1856_d	-	two-component sensor histidine kinase
1858	 60.14	+1	2009611..2010483	-	290	56751866	-	syc1857_c	-	hypothetical protein
1859	 57.06	0	2010538..2011068	-	176	56751867	ycf52	syc1858_c	-	hypothetical protein
1860	 54.84	0	2011238..2011753	+	171	56751868	-	syc1859_d	-	hypothetical protein
1861	 47.22	-2	2011961..2013400	+	479	56751869	glcP	syc1860_d	-	glucose transport protein
1862	 57.24	0	2013542..2013976	+	144	56751870	-	syc1861_d	-	hypothetical protein
1863	 57.84	0	2013985..2015649	+	554	56751871	-	syc1862_d	-	ABC transporter ATP-binding protein
1864	 58.19	0	2015657..2016364	-	235	56751872	trmD	syc1863_c	-	tRNA (guanine-N(1)-)-methyltransferase
1865	 57.44	0	2016370..2016846	-	158	56751873	-	syc1864_c	-	hypothetical protein
1866	 57.17	0	2017511..2018152	+	213	56751874	rplC	syc1865_d	-	50S ribosomal protein L3
1867	 57.35	0	2018197..2018829	+	210	56751875	rplD	syc1866_d	-	50S ribosomal protein L4
1868	 56.44	0	2018822..2019124	+	100	56751876	rplW	syc1867_d	-	50S ribosomal protein L23
1869	 58.68	0	2019154..2020017	+	287	56751877	rplB	syc1868_d	-	50S ribosomal protein L2
1870	 54.71	0	2020049..2020324	+	91	56751878	rpsS	syc1869_d	-	30S ribosomal protein S19
1871	 58.19	0	2020343..2020696	+	117	56751879	rplV	syc1870_d	-	50S ribosomal protein L22
1872	 56.60	0	2020721..2021455	+	244	56751880	rpsC	syc1871_d	-	30S ribosomal protein S3
1873	 58.28	0	2021464..2021892	+	142	56751881	rplP	syc1872_d	-	50S ribosomal protein L16
1874	 53.33	0	2021895..2022089	+	64	56751882	rpmC	syc1873_d	-	50S ribosomal protein L29
1875	 57.83	0	2022124..2022372	+	82	56751883	rpsQ	syc1874_d	-	30S ribosomal protein S17
1876	 55.46	0	2022384..2022749	+	121	56751884	rplN	syc1875_d	-	50S ribosomal protein L14
1877	 53.22	0	2022749..2023090	+	113	56751885	rplX	syc1876_d	-	50S ribosomal protein L24
1878	 55.93	0	2023133..2023672	+	179	56751886	rplE	syc1877_d	-	50S ribosomal protein L5
1879	 58.21	0	2023700..2024101	+	133	56751887	rpsH	syc1878_d	-	30S ribosomal protein S8
1880	 56.85	0	2024138..2024677	+	179	56751888	rplF	syc1879_d	-	50S ribosomal protein L6
1881	 59.23	0	2024677..2025039	+	120	56751889	rplR	syc1880_d	-	50S ribosomal protein L18
1882	 57.27	0	2025043..2025585	+	180	56751890	rpsE	syc1881_d	-	30S ribosomal protein S5
1883	 57.88	0	2025623..2026066	+	147	56751891	rplO	syc1882_d	-	50S ribosomal protein L15
1884	 55.53	0	2026188..2027507	+	439	56751892	secY	syc1883_d	-	preprotein translocase subunit SecY
1885	 56.68	0	2027507..2028067	+	186	56751893	adk	syc1884_d	-	adenylate kinase
1886	 49.12	-1	2028141..2028254	+	37	56751894	rpmJ	syc1885_d	-	50S ribosomal protein L36
1887	 58.73	0	2028409..2028786	+	125	56751895	rpsM	syc1886_d	-	30S ribosomal protein S13
1888	 59.80	0	2028856..2029248	+	130	56751896	rps11	syc1887_d	-	30S ribosomal protein S11
1889	 57.63	0	2029294..2030223	+	309	56751897	rpoA	syc1888_d	-	DNA-directed RNA polymerase subunit alpha
1890	 56.70	0	2030259..2030609	+	116	56751898	rplQ	syc1889_d	-	50S ribosomal protein L17
1891	 57.74	0	2030612..2031496	+	294	56751899	truA	syc1890_d	-	tRNA pseudouridine synthase A
1892	 54.61	0	2031512..2031967	+	151	56751900	rplM	syc1891_d	-	50S ribosomal protein L13
1893	 59.07	0	2031967..2032374	+	135	56751901	rpsI	syc1892_d	-	30S ribosomal protein S9
1894	 54.70	0	2032405..2032638	+	77	56751902	rpmE	syc1893_d	-	50S ribosomal protein L31
1895	 53.93	0	2032740..2033846	+	368	56751903	prfA	syc1894_d	-	peptide chain release factor 1
1896	 53.61	0	2033860..2034357	-	165	56751904	mrcA	syc1895_c	-	restriction endonuclease
1897	 57.49	0	2034482..2035702	+	406	56751905	alr	syc1896_d	-	alanine racemase
1898	 54.47	0	2035952..2036443	+	163	56751906	-	syc1897_d	-	hypothetical protein
1899	 47.65	-2	2036501..2039113	+	870	56751907	dnaE	syc1898_d	-	DNA polymerase III subunit alpha
1900	 50.13	-1	2039099..2040229	-	376	56751908	-	syc1899_c	-	hypothetical protein
1901	 55.44	0	2040243..2041355	-	370	56751909	-	syc1900_c	-	gamma-glutamyl kinase
1902	 56.07	0	2041484..2042125	+	213	56751910	-	syc1901_d	-	hypothetical protein
1903	 59.31	0	2042129..2043976	+	615	56751911	cya2	syc1902_d	-	guanylyl cyclase
1904	 51.49	-1	2044028..2044396	+	122	56751912	-	syc1903_d	-	hypothetical protein
1905	 56.03	0	2044375..2046057	+	560	56751913	-	syc1904_d	-	hypothetical protein
1906	 53.42	0	2046129..2047736	-	535	56751914	-	syc1905_c	-	hypothetical protein
1907	 56.83	0	2047876..2048607	+	243	56751915	-	syc1906_d	-	hypothetical protein
1908	 54.37	0	2048673..2049095	-	140	56751916	-	syc1907_c	-	hypothetical protein
1909	 60.47	+1	2049496..2050899	+	467	56751917	menF	syc1908_d	-	menaquinone-specific isochorismate synthase
1910	 60.99	+1	2050928..2051332	+	134	56751918	-	syc1909_d	-	hypothetical protein
1911	 58.36	0	2051320..2052957	-	545	56751919	-	syc1910_c	-	Na+/H+-exchanging protein
1912	 55.06	0	2053223..2053627	-	134	56751920	-	syc1911_c	-	hypothetical protein
1913	 59.30	0	2053712..2054512	-	266	56751921	-	syc1912_c	-	hypothetical protein
1914	 57.63	0	2054689..2055474	+	261	56751922	rnhA	syc1913_d	-	ribonuclease H
1915	 59.95	0	2055905..2057050	+	381	56751923	-	syc1914_d	-	hypothetical protein
1916	 55.71	0	2057103..2057540	+	145	56751924	-	syc1915_d	-	bacterioferritin comigratory protein
1917	 57.27	0	2057671..2058585	+	304	56751925	-	syc1916_d	-	putative lipid kinase
1918	 53.22	0	2058635..2058976	+	113	56751926	-	syc1917_d	-	hypothetical protein
1919	 58.81	0	2058997..2059950	-	317	56751927	natD	syc1918_c	-	integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD
1920	 58.20	0	2059934..2061079	+	381	56751928	-	syc1919_d	-	hypothetical protein
1921	 53.41	0	2061183..2062283	+	366	56751929	idiA	syc1920_d	-	iron(III) transport system substrate-binding protein
1922	 56.19	0	2062526..2063155	-	209	56751930	-	syc1921_c	-	hypothetical protein
1923	 56.86	0	2063252..2063812	-	186	56751931	-	syc1922_c	-	hypothetical protein
1924	 57.85	0	2063809..2064069	-	86	56751932	-	syc1923_c	-	hypothetical protein
1925	 51.41	-1	2064304..2064834	+	176	56751933	dpsA	syc1924_d	-	starvation induced DNA binding protein
1926	 57.30	0	2065033..2065491	-	152	56751934	fur	syc1925_c	-	ferric uptake regulation protein
1927	 57.41	0	2065547..2065870	+	107	56751935	-	syc1926_d	-	hypothetical protein
1928	 51.87	-1	2065965..2068349	-	794	56751936	pcrA	syc1927_c	-	ATP-dependent helicase PcrA
1929	 54.53	0	2068562..2069014	+	150	56751937	-	syc1928_d	-	hypothetical protein
1930	 56.72	0	2069173..2069544	+	123	56751938	-	syc1929_d	-	hypothetical protein
1931	 54.86	0	2069661..2070041	+	126	56751939	-	syc1930_d	-	hypothetical protein
1932	 58.87	0	2070038..2071423	-	461	56751940	-	syc1931_c	-	cell death suppressor protein Lls1-like protein
1933	 54.55	0	2071505..2072032	-	175	56751941	-	syc1932_c	-	hypothetical protein
1934	 44.60	-2	2072494..2073150	-	218	56751942	-	syc1933_c	-	hypothetical protein
1935	 59.11	0	2073163..2074392	-	409	56751943	spt	syc1934_c	-	alanine--glyoxylate aminotransferase
1936	 58.74	0	2074379..2075311	-	310	56751944	-	syc1935_c	-	hypothetical protein
1937	 58.82	0	2075401..2075910	-	169	56751945	apcF	syc1936_c	-	phycobilisome core component
1938	 51.23	-1	2075946..2076230	+	94	56751946	-	syc1937_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.