IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1739	 57.09	0	1884518..1886188	-	556	56751747	prfC	syc1738_c	-	peptide chain release factor 3
1740	 56.60	0	1886260..1886865	+	201	56751748	-	syc1739_d	-	hypothetical protein
1741	 56.34	0	1886831..1887256	+	141	56751749	-	syc1740_d	-	hypothetical protein
1742	 57.41	0	1887273..1888244	-	323	56751750	sds	syc1741_c	-	solanesyl diphosphate synthase
1743	 58.97	0	1888288..1889157	-	289	56751751	murI	syc1742_c	-	glutamate racemase
1744	 59.61	0	1889170..1890204	-	344	56751752	amiA	syc1743_c	-	N-acetylmuramoyl-L-alanine amidase
1745	 57.12	0	1890254..1891636	-	460	56751753	-	syc1744_c	-	Na+/H+ antiporter
1746	 55.48	0	1891675..1892505	-	276	56751754	-	syc1745_c	-	nitrilase-like protein
1747	 58.92	0	1892581..1894026	+	481	56751755	-	syc1746_d	-	hypothetical protein
1748	 55.14	0	1894193..1894834	+	213	56751756	cysR	syc1747_d	-	transcriptional regulator CRP family protein
1749	 56.79	0	1894925..1895248	+	107	56751757	-	syc1748_d	-	hypothetical protein
1750	 57.90	0	1895301..1895825	+	174	56751758	-	syc1749_d	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1751	 56.70	0	1895922..1896623	-	233	56751759	lipB	syc1750_c	-	lipoyltransferase
1752	 48.88	-1	1896829..1897452	+	207	56751760	lrtA	syc1751_d	-	light repressed protein A-like protein
1753	 57.61	0	1897509..1898756	-	415	56751761	-	syc1752_c	-	hypothetical protein
1754	 58.97	0	1898733..1899434	+	233	56751762	-	syc1753_d	-	hypothetical protein
1755	 54.77	0	1899447..1900640	-	397	56751763	pilT2	syc1754_c	-	twitching mobility protein
1756	 58.43	0	1900715..1901794	-	359	56751764	queA	syc1755_c	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1757	 58.84	0	1901765..1902889	+	374	56751765	-	syc1756_d	-	hypothetical protein
1758	 58.68	0	1902886..1903686	-	266	56751766	hisB	syc1757_c	-	imidazoleglycerol-phosphate dehydratase
1759	 51.92	-1	1904101..1904439	+	112	56751767	ycf65	syc1758_d	-	hypothetical protein
1760	 59.39	0	1904486..1905529	-	347	56751768	-	syc1759_c	-	hypothetical protein
1761	 51.28	-1	1905889..1906005	+	38	56751769	psaI	syc1760_d	-	photosystem I reaction center subunit VIII
1762	 59.20	0	1906203..1906550	+	115	56751770	psaL	syc1761_d	-	photosystem I reaction center protein subunit XI
1763	 58.16	0	1906894..1907775	-	293	56751771	-	syc1762_c	-	hypothetical protein
1764	 57.20	0	1907785..1909146	-	453	56751772	engA	syc1763_c	-	GTP-binding protein EngA
1765	 57.61	0	1909180..1910217	-	345	56751773	rfaE	syc1764_c	-	ADP-heptose synthase
1766	 61.33	+1	1910261..1911178	-	305	56751774	-	syc1765_c	-	hypothetical protein
1767	 58.65	0	1911471..1912430	+	319	56751775	-	syc1766_d	-	hypothetical protein
1768	 57.32	0	1913198..1914106	+	302	56751776	fbpI	syc1767_d	-	fructose-1,6-bisphosphatase
1769	 56.45	0	1914153..1915688	+	511	56751777	zwf	syc1768_d	-	glucose-6-phosphate 1-dehydrogenase
1770	 57.40	0	1915728..1917065	+	445	56751778	opcA	syc1769_d	-	glucose 6-phosphate dehydrogenase assembly protein
1771	 54.45	0	1917176..1917658	-	160	56751779	petD	syc1770_c	-	cytochrome b6-f complex subunit IV
1772	 53.40	0	1917755..1918402	-	215	56751780	petB	syc1771_c	-	cytochrome b6
1773	 57.43	0	1918613..1919836	+	407	56751781	ctpA	syc1772_d	-	carboxyl-terminal processing protease
1774	 57.49	0	1919829..1921103	+	424	56751782	-	syc1773_d	-	hypothetical protein
1775	 58.33	0	1921100..1922191	-	363	56751783	-	syc1774_c	-	hypothetical protein
1776	 45.78	-2	1922259..1922732	+	157	56751784	-	syc1775_d	-	hypothetical protein
1777	 56.18	0	1922766..1923518	-	250	56751785	-	syc1776_c	-	hypothetical protein
1778	 60.32	+1	1924024..1924701	+	225	56751786	-	syc1777_d	-	hypothetical protein
1779	 59.67	0	1924688..1925659	-	323	56751787	gshB	syc1778_c	-	glutathione synthetase
1780	 57.20	0	1925656..1925919	-	87	56751788	grxC	syc1779_c	-	glutaredoxin
1781	 52.92	0	1926084..1926374	-	96	56751789	gatC	syc1780_c	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1782	 52.49	0	1926386..1926907	-	173	56751790	ycf3	syc1781_c	-	photosystem I assembly protein Ycf3
1783	 55.21	0	1926945..1927232	-	95	56751791	-	syc1782_c	-	hypothetical protein
1784	 49.77	-1	1927401..1927619	-	72	56751792	-	syc1783_c	-	hypothetical protein
1785	 56.94	0	1927653..1928279	-	208	56751793	-	syc1784_c	-	hypothetical protein
1786	 59.00	0	1928452..1930824	+	790	56751794	ctaA	syc1785_d	-	copper transporting CPx-type ATPase CtaA
1787	 58.45	0	1931220..1931633	-	137	56751795	atpC	syc1786_c	-	F0F1 ATP synthase subunit epsilon
1788	 57.32	0	1931704..1933158	-	484	56751796	atpB	syc1787_c	-	F0F1 ATP synthase subunit beta
1789	 55.13	0	1933421..1933732	+	103	56751797	groES	syc1788_d	-	co-chaperonin GroES
1790	 56.94	0	1933780..1935414	+	544	56751798	groEL	syc1789_d	-	chaperonin GroEL
1791	 58.88	0	1935498..1936589	-	363	56751799	murG	syc1790_c	-	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl -undecaprenol N-acetylglucosamine transferase
1792	 57.56	0	1936614..1937426	+	270	56751800	-	syc1791_d	-	hypothetical protein
1793	 57.77	0	1937970..1939250	+	426	56751801	-	syc1792_d	-	L-2-diaminobutyrate decarboxylase
1794	 53.30	0	1939316..1939921	+	201	56751802	tpx	syc1793_d	-	thioredoxin peroxidase
1795	 58.53	0	1940045..1941163	-	372	56751803	gcvT	syc1794_c	-	glycine cleavage system aminomethyltransferase T
1796	 38.77	-2	1941293..1942303	-	336	56751804	-	syc1795_c	-	hypothetical protein
1797	 50.07	-1	1943027..1943713	-	228	56751805	nblR	syc1796_c	-	two-component response regulator
1798	 53.38	0	1943758..1944675	-	305	56751806	ppnK	syc1797_c	-	inorganic polyphosphate/ATP-NAD kinase
1799	 59.85	0	1944775..1945566	-	263	56751807	folP	syc1798_c	-	dihydropteroate pyrophosphorylase
1800	 54.62	0	1945781..1946137	+	118	56751808	-	syc1799_d	-	hypothetical protein
1801	 59.39	0	1946624..1947118	-	164	56751809	-	syc1800_c	-	hypothetical protein
1802	 58.15	0	1947124..1947393	-	89	161621814	rpsO	syc1801_c	-	30S ribosomal protein S15
1803	 58.33	0	1947439..1948062	-	207	56751811	ruvA	syc1802_c	-	Holliday junction DNA helicase motor protein
1804	 56.62	0	1948307..1949500	+	397	56751812	tal	syc1803_d	-	transaldolase/EF-hand domain-containing protein
1805	 56.31	0	1949634..1950956	+	440	56751813	glnA	syc1804_d	-	glutamate--ammonia ligase
1806	 58.88	0	1950937..1952040	-	367	56751814	-	syc1805_c	-	hypothetical protein
1807	 56.51	0	1952040..1952876	-	278	56751815	-	syc1806_c	-	hypothetical protein
1808	 57.56	0	1952909..1953358	-	149	56751816	-	syc1807_c	-	hypothetical protein
1809	 58.59	0	1953363..1955627	-	754	56751817	-	syc1808_c	-	hypothetical protein
1810	 57.41	0	1955777..1956748	+	323	56751818	-	syc1809_d	-	hypothetical protein
1811	 58.78	0	1956763..1957497	+	244	56751819	-	syc1810_d	-	3-deoxy-manno-octulosonate cytidylyltransferase
1812	 57.54	0	1957479..1958333	+	284	56751820	ccmA	syc1811_d	-	2-dehydro-3-deoxyphosphooctonate aldolase
1813	 56.42	0	1958330..1958866	+	178	56751821	-	syc1812_d	-	hypothetical protein
1814	 58.67	0	1958908..1959882	+	324	56751822	-	syc1813_d	-	hypothetical protein
1815	 55.89	0	1959969..1961054	+	361	56751823	-	syc1814_d	-	hypothetical protein
1816	 59.81	0	1961180..1962259	+	359	56751824	gldA	syc1815_d	-	glycerol dehydrogenase
1817	 58.66	0	1962256..1963167	+	303	56751825	todF	syc1816_d	-	2-hydroxy-6-oxohepta-24-dienoate hydrolase
1818	 60.22	+1	1963174..1963980	-	268	56751826	-	syc1817_c	-	hypothetical protein
1819	 58.20	0	1964013..1965926	+	637	56751827	-	syc1818_d	-	two-component sensor histidine kinase
1820	 60.19	+1	1965874..1966830	-	318	56751828	-	syc1819_c	-	hypothetical protein
1821	 59.59	0	1966861..1967793	+	310	56751829	-	syc1820_d	-	hypothetical protein
1822	 55.20	0	1968002..1969414	-	470	56751830	amt1	syc1821_c	-	ammonium/methylammonium permease
1823	 50.33	-1	1969788..1971935	-	715	56751831	-	syc1822_c	-	hypothetical protein
1824	 56.31	0	1972129..1972437	+	102	56751832	-	syc1823_d	-	hypothetical protein
1825	 56.29	0	1972694..1973146	+	150	56751833	-	syc1824_d	-	hypothetical protein
1826	 59.44	0	1974032..1976065	-	677	56751834	chlD	syc1825_c	-	magnesium-chelatase subunit ChlD
1827	 57.55	0	1976108..1976875	-	255	56751835	-	syc1826_c	-	hypothetical protein
1828	 58.76	0	1976902..1977432	+	176	56751836	folK	syc1827_d	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
1829	 52.54	0	1977432..1977983	+	183	56751837	-	syc1828_d	-	hypothetical protein
1830	 57.68	0	1978021..1979055	+	344	56751838	-	syc1829_d	-	glucanase
1831	 62.06	+1	1979084..1979821	+	245	56751839	-	syc1830_d	-	hypothetical protein
1832	 59.42	0	1979811..1980956	+	381	56751840	-	syc1831_d	-	hypothetical protein
1833	 60.35	+1	1981346..1982374	+	342	56751841	-	syc1832_d	-	periplasmic polyamine-binding protein of ABC transporter
1834	 59.10	0	1982404..1983699	-	431	56751842	proA	syc1833_c	-	gamma-glutamyl phosphate reductase
1835	 58.33	0	1984099..1984374	+	91	56751843	-	syc1834_d	-	transcriptional regulator
1836	 60.09	+1	1984487..1985794	+	435	56751844	hisS	syc1835_d	-	histidyl-tRNA synthetase
1837	 59.93	0	1985832..1987241	+	469	56751845	-	syc1836_d	-	hypothetical protein
1838	 57.31	0	1987238..1987579	+	113	56751846	-	syc1837_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.