IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1685	 61.59	+1	1822183..1823049	+	288	56751693	-	syc1684_d	-	hypothetical protein
1686	 57.41	0	1823130..1824047	+	305	56751694	-	syc1685_d	-	hypothetical protein
1687	 58.10	0	1824078..1824812	-	244	56751695	cysE	syc1686_c	-	serine acetyltransferase
1688	 54.48	0	1824873..1825397	-	174	56751696	-	syc1687_c	-	hypothetical protein
1689	 59.21	0	1825510..1826394	+	294	56751697	lrrA	syc1688_d	-	transcriptional regulator
1690	 57.82	0	1826448..1827713	+	421	56751698	-	syc1689_d	-	multiple sugar transport system substrate-binding protein
1691	 57.94	0	1827820..1828587	+	255	56751699	srrA	syc1690_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1692	 57.43	0	1828657..1830171	+	504	56751700	lysS	syc1691_d	-	lysyl-tRNA synthetase
1693	 56.63	0	1830377..1831432	+	351	56751701	-	syc1692_d	-	hypothetical protein
1694	 45.26	-2	1831767..1832588	+	273	56751702	-	syc1693_d	-	erthyrocyte band 7 integral membrane protein
1695	 44.35	-2	1832606..1832977	-	123	56751703	-	syc1694_c	-	hypothetical protein
1696	 56.23	0	1833002..1834036	-	344	56751704	-	syc1695_c	-	hypothetical protein
1697	 58.50	0	1834222..1835556	+	444	56751705	purA	syc1696_d	-	adenylosuccinate synthetase
1698	 58.40	0	1835632..1836018	+	128	56751706	-	syc1697_d	-	hypothetical protein
1699	 57.20	0	1836089..1836901	-	270	56751707	-	syc1698_c	-	hypothetical protein
1700	 60.44	+1	1836837..1837976	-	379	56751708	-	syc1699_c	-	FAD dependent oxidoreductase
1701	 58.82	0	1838034..1838288	+	84	56751709	-	syc1700_d	-	hypothetical protein
1702	 58.70	0	1838480..1839220	-	246	56751710	-	syc1701_c	-	hypothetical protein
1703	 56.84	0	1839279..1839563	-	94	56751711	-	syc1702_c	-	hypothetical protein
1704	 57.82	0	1839872..1841002	-	376	56751712	-	syc1703_c	-	hypothetical protein
1705	 55.69	0	1841087..1841578	+	163	56751713	hspA	syc1704_d	-	molecular chaperon
1706	 58.29	0	1841711..1842868	+	385	56751714	-	syc1705_d	-	hypothetical protein
1707	 59.12	0	1842926..1844104	+	392	56751715	-	syc1706_d	-	hypothetical protein
1708	 59.56	0	1844111..1844560	+	149	56751716	-	syc1707_d	-	Holliday junction resolvase-like protein
1709	 54.73	0	1844566..1845093	+	175	56751717	-	syc1708_d	-	hypothetical protein
1710	 59.24	0	1845097..1845648	+	183	56751718	-	syc1709_d	-	hypothetical protein
1711	 53.17	0	1845887..1846138	+	83	56751719	-	syc1710_d	-	hypothetical protein
1712	 59.54	0	1846192..1847973	+	593	56751720	-	syc1711_d	-	Na+/H+ antiporter
1713	 60.24	+1	1847894..1849339	-	481	56751721	gltX	syc1712_c	-	glutamyl-tRNA synthetase
1714	 36.62	-2	1849522..1850982	-	486	56751722	-	syc1713_c	-	hypothetical protein
1715	 52.12	0	1851179..1851886	-	235	56751723	-	syc1714_c	-	oxidoreductase
1716	 58.90	0	1851905..1855561	-	1218	56751724	-	syc1715_c	-	hydantoinase / oxoprolinase
1717	 57.41	0	1855563..1856426	+	287	56751725	-	syc1716_d	-	hypothetical protein
1718	 47.01	-2	1856696..1857865	+	389	56751726	-	syc1717_d	-	hypothetical protein
1719	 47.47	-2	1857909..1859924	+	671	56751727	-	syc1718_d	-	hypothetical protein
1720	 55.98	0	1859926..1861029	-	367	56751728	hypD	syc1719_c	-	hydrogenase isoenzyme formation protein HypD
1721	 59.14	0	1861031..1862053	-	340	56751729	-	syc1720_c	-	dihydroorotate dehydrogenase 2
1722	 60.07	+1	1862053..1865643	-	1196	56751730	nifJ	syc1721_c	-	pyruvate flavodoxin oxidoreductase
1723	 56.77	0	1865767..1866918	-	383	56751731	ycf81	syc1722_c	-	hypothetical protein
1724	 58.10	0	1866958..1868148	+	396	56751732	hemN	syc1723_d	-	coproporphyrinogen III oxidase
1725	 59.36	0	1868145..1868951	-	268	56751733	panB	syc1724_c	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1726	 54.08	0	1869255..1869683	+	142	56751734	-	syc1725_d	-	hypothetical protein
1727	 59.60	0	1869668..1870459	-	263	56751735	thiD	syc1726_c	-	phosphomethylpyrimidine kinase
1728	 58.97	0	1870459..1871640	-	393	56751736	ftsZ	syc1727_c	-	cell division protein FtsZ
1729	 59.65	0	1871860..1872714	-	284	56751737	-	syc1728_c	-	hypothetical protein
1730	 53.77	0	1872733..1873143	-	136	56751738	-	syc1729_c	-	hypothetical protein
1731	 56.51	0	1873147..1874190	-	347	56751739	ddl	syc1730_c	-	D-alanyl-alanine synthetase A
1732	 59.97	0	1874222..1875580	-	452	56751740	-	syc1731_c	-	hypothetical protein
1733	 57.39	0	1875654..1876688	+	344	56751741	-	syc1732_d	-	hypothetical protein
1734	 58.19	0	1876691..1877740	+	349	56751742	-	syc1733_d	-	hypothetical protein
1735	 56.48	0	1877781..1878575	+	264	56751743	-	syc1734_d	-	UDP-N-acetylglucosamine acyltransferase
1736	 53.01	0	1878816..1881986	-	1056	56751744	acrF	syc1735_c	-	RND multidrug efflux transporter
1737	 52.70	0	1882007..1883137	-	376	56751745	-	syc1736_c	-	hypothetical protein
1738	 55.95	0	1883573..1884076	+	167	56751746	-	syc1737_d	-	hypothetical protein
1739	 57.09	0	1884518..1886188	-	556	56751747	prfC	syc1738_c	-	peptide chain release factor 3
1740	 56.60	0	1886260..1886865	+	201	56751748	-	syc1739_d	-	hypothetical protein
1741	 56.34	0	1886831..1887256	+	141	56751749	-	syc1740_d	-	hypothetical protein
1742	 57.41	0	1887273..1888244	-	323	56751750	sds	syc1741_c	-	solanesyl diphosphate synthase
1743	 58.97	0	1888288..1889157	-	289	56751751	murI	syc1742_c	-	glutamate racemase
1744	 59.61	0	1889170..1890204	-	344	56751752	amiA	syc1743_c	-	N-acetylmuramoyl-L-alanine amidase
1745	 57.12	0	1890254..1891636	-	460	56751753	-	syc1744_c	-	Na+/H+ antiporter
1746	 55.48	0	1891675..1892505	-	276	56751754	-	syc1745_c	-	nitrilase-like protein
1747	 58.92	0	1892581..1894026	+	481	56751755	-	syc1746_d	-	hypothetical protein
1748	 55.14	0	1894193..1894834	+	213	56751756	cysR	syc1747_d	-	transcriptional regulator CRP family protein
1749	 56.79	0	1894925..1895248	+	107	56751757	-	syc1748_d	-	hypothetical protein
1750	 57.90	0	1895301..1895825	+	174	56751758	-	syc1749_d	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1751	 56.70	0	1895922..1896623	-	233	56751759	lipB	syc1750_c	-	lipoyltransferase
1752	 48.88	-1	1896829..1897452	+	207	56751760	lrtA	syc1751_d	-	light repressed protein A-like protein
1753	 57.61	0	1897509..1898756	-	415	56751761	-	syc1752_c	-	hypothetical protein
1754	 58.97	0	1898733..1899434	+	233	56751762	-	syc1753_d	-	hypothetical protein
1755	 54.77	0	1899447..1900640	-	397	56751763	pilT2	syc1754_c	-	twitching mobility protein
1756	 58.43	0	1900715..1901794	-	359	56751764	queA	syc1755_c	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1757	 58.84	0	1901765..1902889	+	374	56751765	-	syc1756_d	-	hypothetical protein
1758	 58.68	0	1902886..1903686	-	266	56751766	hisB	syc1757_c	-	imidazoleglycerol-phosphate dehydratase
1759	 51.92	-1	1904101..1904439	+	112	56751767	ycf65	syc1758_d	-	hypothetical protein
1760	 59.39	0	1904486..1905529	-	347	56751768	-	syc1759_c	-	hypothetical protein
1761	 51.28	-1	1905889..1906005	+	38	56751769	psaI	syc1760_d	-	photosystem I reaction center subunit VIII
1762	 59.20	0	1906203..1906550	+	115	56751770	psaL	syc1761_d	-	photosystem I reaction center protein subunit XI
1763	 58.16	0	1906894..1907775	-	293	56751771	-	syc1762_c	-	hypothetical protein
1764	 57.20	0	1907785..1909146	-	453	56751772	engA	syc1763_c	-	GTP-binding protein EngA
1765	 57.61	0	1909180..1910217	-	345	56751773	rfaE	syc1764_c	-	ADP-heptose synthase
1766	 61.33	+1	1910261..1911178	-	305	56751774	-	syc1765_c	-	hypothetical protein
1767	 58.65	0	1911471..1912430	+	319	56751775	-	syc1766_d	-	hypothetical protein
1768	 57.32	0	1913198..1914106	+	302	56751776	fbpI	syc1767_d	-	fructose-1,6-bisphosphatase
1769	 56.45	0	1914153..1915688	+	511	56751777	zwf	syc1768_d	-	glucose-6-phosphate 1-dehydrogenase
1770	 57.40	0	1915728..1917065	+	445	56751778	opcA	syc1769_d	-	glucose 6-phosphate dehydrogenase assembly protein
1771	 54.45	0	1917176..1917658	-	160	56751779	petD	syc1770_c	-	cytochrome b6-f complex subunit IV
1772	 53.40	0	1917755..1918402	-	215	56751780	petB	syc1771_c	-	cytochrome b6
1773	 57.43	0	1918613..1919836	+	407	56751781	ctpA	syc1772_d	-	carboxyl-terminal processing protease
1774	 57.49	0	1919829..1921103	+	424	56751782	-	syc1773_d	-	hypothetical protein
1775	 58.33	0	1921100..1922191	-	363	56751783	-	syc1774_c	-	hypothetical protein
1776	 45.78	-2	1922259..1922732	+	157	56751784	-	syc1775_d	-	hypothetical protein
1777	 56.18	0	1922766..1923518	-	250	56751785	-	syc1776_c	-	hypothetical protein
1778	 60.32	+1	1924024..1924701	+	225	56751786	-	syc1777_d	-	hypothetical protein
1779	 59.67	0	1924688..1925659	-	323	56751787	gshB	syc1778_c	-	glutathione synthetase
1780	 57.20	0	1925656..1925919	-	87	56751788	grxC	syc1779_c	-	glutaredoxin
1781	 52.92	0	1926084..1926374	-	96	56751789	gatC	syc1780_c	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1782	 52.49	0	1926386..1926907	-	173	56751790	ycf3	syc1781_c	-	photosystem I assembly protein Ycf3
1783	 55.21	0	1926945..1927232	-	95	56751791	-	syc1782_c	-	hypothetical protein
1784	 49.77	-1	1927401..1927619	-	72	56751792	-	syc1783_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.