IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1654	 55.16	0	1786152..1786490	+	112	56751662	-	syc1653_d	-	hypothetical protein
1655	 52.92	0	1786527..1786868	+	113	56751663	-	syc1654_d	-	hypothetical protein
1656	 56.86	0	1786865..1787659	+	264	56751664	-	syc1655_d	-	hypothetical protein
1657	 52.98	0	1787875..1790052	+	725	56751665	pilQ	syc1656_d	-	type IV pilus assembly protein PilQ
1658	 55.35	0	1790224..1790859	-	211	56751666	-	syc1657_c	-	antioxidant protein] rehydrin
1659	 59.33	0	1790957..1792564	-	535	56751667	hflX	syc1658_c	-	GTP-binding protein HflX
1660	 54.05	0	1792713..1792934	-	73	56751668	-	syc1659_c	-	hypothetical protein
1661	 56.24	0	1793109..1793942	+	277	161621815	map	syc1660_d	-	methionine aminopeptidase
1662	 51.78	-1	1794095..1795108	+	337	56751670	sphX	syc1661_d	-	periplasmic phosphate-binding protein of ABC transporter
1663	 52.76	0	1795388..1796401	+	337	56751671	pstS	syc1662_d	-	phosphate transport system substrate-binding protein
1664	 52.89	0	1796520..1797419	+	299	56751672	pstC	syc1663_d	-	ABC-type phosphate transport system permease protein
1665	 56.25	0	1797419..1798330	+	303	56751673	pstA	syc1664_d	-	ABC-type phosphate transport system permease protein
1666	 54.34	0	1798378..1799172	+	264	56751674	pstB	syc1665_d	-	ABC-type phosphate transport ATP-binding protein
1667	 58.30	0	1799334..1801484	+	716	56751675	pnp	syc1666_d	-	polynucleotide phosphorylase/polyadenylase
1668	 54.42	0	1801757..1802752	-	331	56751676	crtR	syc1667_c	-	beta-carotene hydroxylase
1669	 56.62	0	1803155..1804588	+	477	56751677	-	syc1668_d	-	hypothetical protein
1670	 57.38	0	1804660..1807524	+	954	56751678	ileS	syc1669_d	-	isoleucyl-tRNA synthetase
1671	 50.25	-1	1807583..1808179	+	198	56751679	msrA	syc1670_d	-	peptide methionine sulfoxide reductase
1672	 53.78	0	1808223..1808843	-	206	56751680	-	syc1671_c	-	hypothetical protein
1673	 56.65	0	1808847..1809365	-	172	56751681	ilvH	syc1672_c	-	acetolactate synthase 3 regulatory subunit
1674	 58.96	0	1809382..1810302	-	306	56751682	-	syc1673_c	-	hypothetical protein
1675	 52.38	0	1810299..1810907	-	202	56751683	-	syc1674_c	-	hypothetical protein
1676	 58.08	0	1811046..1814738	+	1230	56751684	-	syc1675_d	-	hypothetical protein
1677	 58.12	0	1814915..1816060	+	381	56751685	-	syc1676_d	-	N2, N2-dimethylguanosine tRNA
1678	 57.91	0	1816099..1816749	+	216	56751686	exbB2	syc1677_d	-	biopolymer transport ExbB like protein
1679	 57.49	0	1816783..1817229	+	148	56751687	-	syc1678_d	-	biopolymer transport ExbD like protein
1680	 59.31	0	1817213..1818055	-	280	56751688	-	syc1679_c	-	thiosulfate sulfurtransferase
1681	 50.88	-1	1818134..1818247	+	37	56751689	petM	syc1680_d	-	cytochrome b6-f complex subunit PetM
1682	 56.70	0	1818366..1819328	+	320	56751690	ycf39	syc1681_d	-	chaperon-like protein for quinone binding in photosystem II
1683	 54.77	0	1819397..1820203	+	268	56751691	-	syc1682_d	-	hypothetical protein
1684	 57.65	0	1820252..1822159	+	635	56751692	gidA	syc1683_d	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1685	 61.59	+1	1822183..1823049	+	288	56751693	-	syc1684_d	-	hypothetical protein
1686	 57.41	0	1823130..1824047	+	305	56751694	-	syc1685_d	-	hypothetical protein
1687	 58.10	0	1824078..1824812	-	244	56751695	cysE	syc1686_c	-	serine acetyltransferase
1688	 54.48	0	1824873..1825397	-	174	56751696	-	syc1687_c	-	hypothetical protein
1689	 59.21	0	1825510..1826394	+	294	56751697	lrrA	syc1688_d	-	transcriptional regulator
1690	 57.82	0	1826448..1827713	+	421	56751698	-	syc1689_d	-	multiple sugar transport system substrate-binding protein
1691	 57.94	0	1827820..1828587	+	255	56751699	srrA	syc1690_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1692	 57.43	0	1828657..1830171	+	504	56751700	lysS	syc1691_d	-	lysyl-tRNA synthetase
1693	 56.63	0	1830377..1831432	+	351	56751701	-	syc1692_d	-	hypothetical protein
1694	 45.26	-2	1831767..1832588	+	273	56751702	-	syc1693_d	-	erthyrocyte band 7 integral membrane protein
1695	 44.35	-2	1832606..1832977	-	123	56751703	-	syc1694_c	-	hypothetical protein
1696	 56.23	0	1833002..1834036	-	344	56751704	-	syc1695_c	-	hypothetical protein
1697	 58.50	0	1834222..1835556	+	444	56751705	purA	syc1696_d	-	adenylosuccinate synthetase
1698	 58.40	0	1835632..1836018	+	128	56751706	-	syc1697_d	-	hypothetical protein
1699	 57.20	0	1836089..1836901	-	270	56751707	-	syc1698_c	-	hypothetical protein
1700	 60.44	+1	1836837..1837976	-	379	56751708	-	syc1699_c	-	FAD dependent oxidoreductase
1701	 58.82	0	1838034..1838288	+	84	56751709	-	syc1700_d	-	hypothetical protein
1702	 58.70	0	1838480..1839220	-	246	56751710	-	syc1701_c	-	hypothetical protein
1703	 56.84	0	1839279..1839563	-	94	56751711	-	syc1702_c	-	hypothetical protein
1704	 57.82	0	1839872..1841002	-	376	56751712	-	syc1703_c	-	hypothetical protein
1705	 55.69	0	1841087..1841578	+	163	56751713	hspA	syc1704_d	-	molecular chaperon
1706	 58.29	0	1841711..1842868	+	385	56751714	-	syc1705_d	-	hypothetical protein
1707	 59.12	0	1842926..1844104	+	392	56751715	-	syc1706_d	-	hypothetical protein
1708	 59.56	0	1844111..1844560	+	149	56751716	-	syc1707_d	-	Holliday junction resolvase-like protein
1709	 54.73	0	1844566..1845093	+	175	56751717	-	syc1708_d	-	hypothetical protein
1710	 59.24	0	1845097..1845648	+	183	56751718	-	syc1709_d	-	hypothetical protein
1711	 53.17	0	1845887..1846138	+	83	56751719	-	syc1710_d	-	hypothetical protein
1712	 59.54	0	1846192..1847973	+	593	56751720	-	syc1711_d	-	Na+/H+ antiporter
1713	 60.24	+1	1847894..1849339	-	481	56751721	gltX	syc1712_c	-	glutamyl-tRNA synthetase
1714	 36.62	-2	1849522..1850982	-	486	56751722	-	syc1713_c	-	hypothetical protein
1715	 52.12	0	1851179..1851886	-	235	56751723	-	syc1714_c	-	oxidoreductase
1716	 58.90	0	1851905..1855561	-	1218	56751724	-	syc1715_c	-	hydantoinase / oxoprolinase
1717	 57.41	0	1855563..1856426	+	287	56751725	-	syc1716_d	-	hypothetical protein
1718	 47.01	-2	1856696..1857865	+	389	56751726	-	syc1717_d	-	hypothetical protein
1719	 47.47	-2	1857909..1859924	+	671	56751727	-	syc1718_d	-	hypothetical protein
1720	 55.98	0	1859926..1861029	-	367	56751728	hypD	syc1719_c	-	hydrogenase isoenzyme formation protein HypD
1721	 59.14	0	1861031..1862053	-	340	56751729	-	syc1720_c	-	dihydroorotate dehydrogenase 2
1722	 60.07	+1	1862053..1865643	-	1196	56751730	nifJ	syc1721_c	-	pyruvate flavodoxin oxidoreductase
1723	 56.77	0	1865767..1866918	-	383	56751731	ycf81	syc1722_c	-	hypothetical protein
1724	 58.10	0	1866958..1868148	+	396	56751732	hemN	syc1723_d	-	coproporphyrinogen III oxidase
1725	 59.36	0	1868145..1868951	-	268	56751733	panB	syc1724_c	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1726	 54.08	0	1869255..1869683	+	142	56751734	-	syc1725_d	-	hypothetical protein
1727	 59.60	0	1869668..1870459	-	263	56751735	thiD	syc1726_c	-	phosphomethylpyrimidine kinase
1728	 58.97	0	1870459..1871640	-	393	56751736	ftsZ	syc1727_c	-	cell division protein FtsZ
1729	 59.65	0	1871860..1872714	-	284	56751737	-	syc1728_c	-	hypothetical protein
1730	 53.77	0	1872733..1873143	-	136	56751738	-	syc1729_c	-	hypothetical protein
1731	 56.51	0	1873147..1874190	-	347	56751739	ddl	syc1730_c	-	D-alanyl-alanine synthetase A
1732	 59.97	0	1874222..1875580	-	452	56751740	-	syc1731_c	-	hypothetical protein
1733	 57.39	0	1875654..1876688	+	344	56751741	-	syc1732_d	-	hypothetical protein
1734	 58.19	0	1876691..1877740	+	349	56751742	-	syc1733_d	-	hypothetical protein
1735	 56.48	0	1877781..1878575	+	264	56751743	-	syc1734_d	-	UDP-N-acetylglucosamine acyltransferase
1736	 53.01	0	1878816..1881986	-	1056	56751744	acrF	syc1735_c	-	RND multidrug efflux transporter
1737	 52.70	0	1882007..1883137	-	376	56751745	-	syc1736_c	-	hypothetical protein
1738	 55.95	0	1883573..1884076	+	167	56751746	-	syc1737_d	-	hypothetical protein
1739	 57.09	0	1884518..1886188	-	556	56751747	prfC	syc1738_c	-	peptide chain release factor 3
1740	 56.60	0	1886260..1886865	+	201	56751748	-	syc1739_d	-	hypothetical protein
1741	 56.34	0	1886831..1887256	+	141	56751749	-	syc1740_d	-	hypothetical protein
1742	 57.41	0	1887273..1888244	-	323	56751750	sds	syc1741_c	-	solanesyl diphosphate synthase
1743	 58.97	0	1888288..1889157	-	289	56751751	murI	syc1742_c	-	glutamate racemase
1744	 59.61	0	1889170..1890204	-	344	56751752	amiA	syc1743_c	-	N-acetylmuramoyl-L-alanine amidase
1745	 57.12	0	1890254..1891636	-	460	56751753	-	syc1744_c	-	Na+/H+ antiporter
1746	 55.48	0	1891675..1892505	-	276	56751754	-	syc1745_c	-	nitrilase-like protein
1747	 58.92	0	1892581..1894026	+	481	56751755	-	syc1746_d	-	hypothetical protein
1748	 55.14	0	1894193..1894834	+	213	56751756	cysR	syc1747_d	-	transcriptional regulator CRP family protein
1749	 56.79	0	1894925..1895248	+	107	56751757	-	syc1748_d	-	hypothetical protein
1750	 57.90	0	1895301..1895825	+	174	56751758	-	syc1749_d	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1751	 56.70	0	1895922..1896623	-	233	56751759	lipB	syc1750_c	-	lipoyltransferase
1752	 48.88	-1	1896829..1897452	+	207	56751760	lrtA	syc1751_d	-	light repressed protein A-like protein
1753	 57.61	0	1897509..1898756	-	415	56751761	-	syc1752_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.