IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1603	 59.49	0	1730643..1731116	+	157	56751611	-	syc1602_d	-	hypothetical protein
1604	 56.31	0	1731324..1732289	+	321	56751612	por	syc1603_d	-	protochlorophyllide oxidoreductase
1605	 55.98	0	1732540..1733784	+	414	56751613	-	syc1604_d	-	hypothetical protein
1606	 56.81	0	1733781..1734845	-	354	56751614	aroF	syc1605_c	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1607	 55.88	0	1735068..1735688	+	206	56751615	-	syc1606_d	-	hypothetical protein
1608	 58.54	0	1735729..1737069	+	446	56751616	-	syc1607_d	-	hypothetical protein
1609	 57.83	0	1737069..1738313	+	414	56751617	-	syc1608_d	-	flotillin
1610	 55.92	0	1738413..1738868	+	151	56751618	ndk	syc1609_d	-	nucleoside diphosphate kinase
1611	 58.00	0	1738898..1740097	+	399	56751619	livK	syc1610_d	-	branched-chain amino-acid ABC transport system periplasmic binding protein
1612	 58.17	0	1740097..1741038	+	313	56751620	livH	syc1611_d	-	integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD
1613	 61.26	+1	1741042..1741965	+	307	56751621	livM	syc1612_d	-	branched-chain amino acid transport system permease protein
1614	 57.35	0	1741962..1742723	+	253	56751622	livG	syc1613_d	-	component of ABC transporter for natural amino acids
1615	 57.56	0	1742716..1743429	+	237	56751623	livF	syc1614_d	-	branched-chain amino acid ABC transporter ATP-binding protein
1616	 54.54	0	1743835..1745772	-	645	56751624	gyrB	syc1615_c	-	DNA gyrase subunit B
1617	 54.61	0	1745900..1746820	+	306	56751625	miaA	syc1616_d	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1618	 54.43	0	1746915..1747151	-	78	56751626	-	syc1617_c	-	hypothetical protein
1619	 56.98	0	1747273..1747881	-	202	56751627	-	syc1618_c	-	hypothetical protein
1620	 54.79	0	1747953..1748171	-	72	56751628	-	syc1619_c	-	hypothetical protein
1621	 47.94	-1	1748479..1750059	+	526	56751629	-	syc1620_d	-	hypothetical protein
1622	 50.65	-1	1750795..1751487	+	230	56751630	-	syc1621_d	-	hypothetical protein
1623	 46.32	-2	1751704..1753104	+	466	56751631	-	syc1622_d	-	hypothetical protein
1624	 49.07	-1	1753716..1754948	+	410	56751632	-	syc1623_d	-	hypothetical protein
1625	 40.31	-2	1754936..1755838	+	300	56751633	-	syc1624_d	-	hypothetical protein
1626	 46.38	-2	1755843..1756394	-	183	56751634	-	syc1625_c	-	pilin-like protein
1627	 55.73	0	1756910..1757284	+	124	56751635	psb28	syc1626_d	-	photosystem II reaction center W protein
1628	 57.41	0	1757300..1758196	+	298	56751636	-	syc1627_d	-	hypothetical protein
1629	 57.94	0	1758193..1758570	-	125	56751637	-	syc1628_c	-	hypothetical protein
1630	 56.82	0	1758668..1760068	-	466	56751638	argH	syc1629_c	-	argininosuccinate lyase
1631	 52.47	0	1760176..1760337	-	53	56751639	-	syc1630_c	-	hypothetical protein
1632	 58.68	0	1760393..1761781	-	462	56751640	-	syc1631_c	-	hypothetical protein
1633	 59.28	0	1761961..1763517	-	518	56751641	ffh	syc1632_c	-	signal recognition particle subunit SRP54
1634	 58.57	0	1763532..1764173	-	213	56751642	nusB	syc1633_c	-	transcription antitermination protein NusB
1635	 57.13	0	1764320..1765126	-	268	56751643	-	syc1634_c	-	hypothetical protein
1636	 56.29	0	1765311..1766081	-	256	56751644	-	syc1635_c	-	hypothetical protein
1637	 56.43	0	1766259..1768163	-	634	56751645	dnaK	syc1636_c	-	molecular chaperone DnaK
1638	 59.17	0	1768342..1769208	+	288	56751646	aroE	syc1637_d	-	shikimate 5-dehydrogenase
1639	 58.13	0	1769228..1769848	-	206	56751647	-	syc1638_c	-	two-component system response regulator
1640	 56.30	0	1770181..1770450	+	89	56751648	-	syc1639_d	-	hypothetical protein
1641	 59.08	0	1770619..1771317	+	232	56751649	-	syc1640_d	-	N-acetylmannosamine-6-phosphate 2-epimerase
1642	 56.30	0	1771414..1772667	+	417	161621816	metK	syc1641_d	-	S-adenosylmethionine synthetase
1643	 55.74	0	1772679..1773959	+	426	56751651	xylB	syc1642_d	-	sugar kinase
1644	 47.28	-2	1774048..1775481	+	477	56751652	-	syc1643_d	-	hypothetical protein
1645	 44.16	-2	1775604..1776878	+	424	56751653	-	syc1644_d	-	hypothetical protein
1646	 39.94	-2	1777075..1778163	-	362	56751654	-	syc1645_c	-	hypothetical protein
1647	 59.21	0	1778427..1780613	-	728	56751655	comE	syc1646_c	-	competence protein ComE
1648	 55.40	0	1780667..1781545	-	292	56751656	glyQ	syc1647_c	-	glycyl-tRNA synthetase subunit alpha
1649	 59.20	0	1781660..1782610	-	316	56751657	-	syc1648_c	-	hypothetical protein
1650	 59.24	0	1782617..1783249	-	210	56751658	-	syc1649_c	-	hypothetical protein
1651	 57.95	0	1783411..1783926	+	171	56751659	apt	syc1650_d	-	adenine phosphoribosyltransferase
1652	 56.60	0	1784164..1784928	+	254	56751660	-	syc1651_d	-	oligopeptides ABC transporter permease protein
1653	 56.57	0	1785070..1786149	+	359	56751661	pilM	syc1652_d	-	type IV pilus assembly protein PilM
1654	 55.16	0	1786152..1786490	+	112	56751662	-	syc1653_d	-	hypothetical protein
1655	 52.92	0	1786527..1786868	+	113	56751663	-	syc1654_d	-	hypothetical protein
1656	 56.86	0	1786865..1787659	+	264	56751664	-	syc1655_d	-	hypothetical protein
1657	 52.98	0	1787875..1790052	+	725	56751665	pilQ	syc1656_d	-	type IV pilus assembly protein PilQ
1658	 55.35	0	1790224..1790859	-	211	56751666	-	syc1657_c	-	antioxidant protein] rehydrin
1659	 59.33	0	1790957..1792564	-	535	56751667	hflX	syc1658_c	-	GTP-binding protein HflX
1660	 54.05	0	1792713..1792934	-	73	56751668	-	syc1659_c	-	hypothetical protein
1661	 56.24	0	1793109..1793942	+	277	161621815	map	syc1660_d	-	methionine aminopeptidase
1662	 51.78	-1	1794095..1795108	+	337	56751670	sphX	syc1661_d	-	periplasmic phosphate-binding protein of ABC transporter
1663	 52.76	0	1795388..1796401	+	337	56751671	pstS	syc1662_d	-	phosphate transport system substrate-binding protein
1664	 52.89	0	1796520..1797419	+	299	56751672	pstC	syc1663_d	-	ABC-type phosphate transport system permease protein
1665	 56.25	0	1797419..1798330	+	303	56751673	pstA	syc1664_d	-	ABC-type phosphate transport system permease protein
1666	 54.34	0	1798378..1799172	+	264	56751674	pstB	syc1665_d	-	ABC-type phosphate transport ATP-binding protein
1667	 58.30	0	1799334..1801484	+	716	56751675	pnp	syc1666_d	-	polynucleotide phosphorylase/polyadenylase
1668	 54.42	0	1801757..1802752	-	331	56751676	crtR	syc1667_c	-	beta-carotene hydroxylase
1669	 56.62	0	1803155..1804588	+	477	56751677	-	syc1668_d	-	hypothetical protein
1670	 57.38	0	1804660..1807524	+	954	56751678	ileS	syc1669_d	-	isoleucyl-tRNA synthetase
1671	 50.25	-1	1807583..1808179	+	198	56751679	msrA	syc1670_d	-	peptide methionine sulfoxide reductase
1672	 53.78	0	1808223..1808843	-	206	56751680	-	syc1671_c	-	hypothetical protein
1673	 56.65	0	1808847..1809365	-	172	56751681	ilvH	syc1672_c	-	acetolactate synthase 3 regulatory subunit
1674	 58.96	0	1809382..1810302	-	306	56751682	-	syc1673_c	-	hypothetical protein
1675	 52.38	0	1810299..1810907	-	202	56751683	-	syc1674_c	-	hypothetical protein
1676	 58.08	0	1811046..1814738	+	1230	56751684	-	syc1675_d	-	hypothetical protein
1677	 58.12	0	1814915..1816060	+	381	56751685	-	syc1676_d	-	N2, N2-dimethylguanosine tRNA
1678	 57.91	0	1816099..1816749	+	216	56751686	exbB2	syc1677_d	-	biopolymer transport ExbB like protein
1679	 57.49	0	1816783..1817229	+	148	56751687	-	syc1678_d	-	biopolymer transport ExbD like protein
1680	 59.31	0	1817213..1818055	-	280	56751688	-	syc1679_c	-	thiosulfate sulfurtransferase
1681	 50.88	-1	1818134..1818247	+	37	56751689	petM	syc1680_d	-	cytochrome b6-f complex subunit PetM
1682	 56.70	0	1818366..1819328	+	320	56751690	ycf39	syc1681_d	-	chaperon-like protein for quinone binding in photosystem II
1683	 54.77	0	1819397..1820203	+	268	56751691	-	syc1682_d	-	hypothetical protein
1684	 57.65	0	1820252..1822159	+	635	56751692	gidA	syc1683_d	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1685	 61.59	+1	1822183..1823049	+	288	56751693	-	syc1684_d	-	hypothetical protein
1686	 57.41	0	1823130..1824047	+	305	56751694	-	syc1685_d	-	hypothetical protein
1687	 58.10	0	1824078..1824812	-	244	56751695	cysE	syc1686_c	-	serine acetyltransferase
1688	 54.48	0	1824873..1825397	-	174	56751696	-	syc1687_c	-	hypothetical protein
1689	 59.21	0	1825510..1826394	+	294	56751697	lrrA	syc1688_d	-	transcriptional regulator
1690	 57.82	0	1826448..1827713	+	421	56751698	-	syc1689_d	-	multiple sugar transport system substrate-binding protein
1691	 57.94	0	1827820..1828587	+	255	56751699	srrA	syc1690_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1692	 57.43	0	1828657..1830171	+	504	56751700	lysS	syc1691_d	-	lysyl-tRNA synthetase
1693	 56.63	0	1830377..1831432	+	351	56751701	-	syc1692_d	-	hypothetical protein
1694	 45.26	-2	1831767..1832588	+	273	56751702	-	syc1693_d	-	erthyrocyte band 7 integral membrane protein
1695	 44.35	-2	1832606..1832977	-	123	56751703	-	syc1694_c	-	hypothetical protein
1696	 56.23	0	1833002..1834036	-	344	56751704	-	syc1695_c	-	hypothetical protein
1697	 58.50	0	1834222..1835556	+	444	56751705	purA	syc1696_d	-	adenylosuccinate synthetase
1698	 58.40	0	1835632..1836018	+	128	56751706	-	syc1697_d	-	hypothetical protein
1699	 57.20	0	1836089..1836901	-	270	56751707	-	syc1698_c	-	hypothetical protein
1700	 60.44	+1	1836837..1837976	-	379	56751708	-	syc1699_c	-	FAD dependent oxidoreductase
1701	 58.82	0	1838034..1838288	+	84	56751709	-	syc1700_d	-	hypothetical protein
1702	 58.70	0	1838480..1839220	-	246	56751710	-	syc1701_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.