IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1551	 56.33	0	1677750..1678310	-	186	56751559	-	syc1550_c	-	hypothetical protein
1552	 55.34	0	1678598..1679056	+	152	56751560	rplI	syc1551_d	-	50S ribosomal protein L9
1553	 58.10	0	1679102..1680268	-	388	56751561	nifS	syc1552_c	-	cysteine desulfurase NifS
1554	 58.00	0	1680399..1681148	+	249	56751562	hoxU	syc1553_d	-	bidirectional hydrogenase complex protein HoxU
1555	 57.84	0	1681136..1681690	+	184	56751563	hoxY	syc1554_d	-	NAD-reducing hydrogenase HoxS delta subunit
1556	 57.30	0	1681700..1683130	+	476	56751564	hoxH	syc1555_d	-	NAD-reducing hydrogenase HoxS beta subunit
1557	 57.30	0	1683139..1683597	+	152	56751565	-	syc1556_d	-	hypothetical protein
1558	 57.82	0	1683585..1683923	+	112	56751566	hypA	syc1557_d	-	hydrogenase expression/formation protein HypA
1559	 58.02	0	1683924..1684652	+	242	56751567	hypB	syc1558_d	-	hydrogenase isoenzyme formation protein HypB
1560	 58.50	0	1684724..1687036	+	770	56751568	hypF	syc1559_d	-	hydrogenase maturation protein HypF
1561	 58.54	0	1686984..1687229	+	81	56751569	hypC	syc1560_d	-	hydrogenase maturation protein HypC
1562	 57.26	0	1687226..1688299	-	357	56751570	-	syc1561_c	-	hypothetical protein
1563	 57.47	0	1688755..1689363	-	202	56751571	leuD	syc1562_c	-	isopropylmalate isomerase small subunit
1564	 55.45	0	1689461..1689781	-	106	56751572	-	syc1563_c	-	hypothetical protein
1565	 57.36	0	1689830..1690549	-	239	56751573	-	syc1564_c	-	hypothetical protein
1566	 55.98	0	1690626..1691804	-	392	56751574	aspC	syc1565_c	-	aspartate aminotransferase
1567	 59.74	0	1691918..1692307	+	129	56751575	-	syc1566_d	-	hypothetical protein
1568	 59.89	0	1692337..1693044	+	235	56751576	-	syc1567_d	-	DNA polymerase bacteriophage-type
1569	 54.89	0	1693061..1693408	+	115	56751577	petJ	syc1568_d	-	putative cytochrome C6-2
1570	 55.97	0	1694020..1694496	-	158	56751578	rplS	syc1569_c	-	50S ribosomal protein L19
1571	 58.01	0	1694488..1694949	+	153	56751579	-	syc1570_d	-	blue-copper-protein-like protein
1572	 56.76	0	1695130..1695684	+	184	56751580	-	syc1571_d	-	hypothetical protein
1573	 57.64	0	1695826..1696512	+	228	56751581	clpP	syc1572_d	-	ATP-dependent Clp protease-like protein
1574	 54.50	0	1696555..1697154	+	199	56751582	clpP	syc1573_d	-	ATP-dependent Clp protease proteolytic subunit
1575	 58.43	0	1697160..1697693	+	177	56751583	-	syc1574_d	-	DnaJ-class molecular chaperone
1576	 52.88	0	1697676..1700882	-	1068	56751584	-	syc1575_c	-	hypothetical protein
1577	 50.57	-1	1701075..1702391	+	438	56751585	-	syc1576_d	-	hypothetical protein
1578	 58.01	0	1702408..1702788	-	126	56751586	-	syc1577_c	-	hypothetical protein
1579	 58.33	0	1702849..1703796	+	315	56751587	-	syc1578_d	-	hypothetical protein
1580	 54.35	0	1703880..1704545	-	221	56751588	tsf	syc1579_c	-	elongation factor Ts
1581	 57.54	0	1704648..1705403	-	251	56751589	rpsB	syc1580_c	-	30S ribosomal protein S2
1582	 59.50	0	1706403..1707044	-	213	56751590	-	syc1581_c	-	hypothetical protein
1583	 58.60	0	1707068..1707910	-	280	56751591	-	syc1582_c	-	esterase
1584	 56.07	0	1707907..1709256	-	449	56751592	clpX	syc1583_c	-	ATP-dependent protease ATP-binding subunit
1585	 58.09	0	1709269..1709991	-	240	56751593	clpP	syc1584_c	-	ATP-dependent Clp protease proteolytic subunit
1586	 56.35	0	1710083..1711507	-	474	56751594	tig	syc1585_c	-	trigger factor
1587	 53.70	0	1711775..1714087	+	770	56751595	gpsA	syc1586_d	-	NAD+ dependent glycerol-3-phosphate dehydrogenase
1588	 52.88	0	1714096..1714806	+	236	56751596	-	syc1587_d	-	hypothetical protein
1589	 47.85	-2	1715080..1717593	+	837	56751597	-	syc1588_d	-	hypothetical protein
1590	 54.79	0	1717636..1719033	+	465	56751598	glgA	syc1589_d	-	glycogen synthase
1591	 61.80	+1	1719055..1719753	+	232	56751599	-	syc1590_d	-	hypothetical protein
1592	 58.47	0	1720325..1722592	+	755	56751600	-	syc1591_d	-	hypothetical protein
1593	 56.54	0	1722626..1723543	-	305	56751601	argF	syc1592_c	-	ornithine carbamoyltransferase
1594	 58.68	0	1723615..1724478	-	287	56751602	btpA	syc1593_c	-	photosystem I biogenesis protein BtpA
1595	 57.98	0	1724730..1726019	+	429	56751603	-	syc1594_d	-	hypothetical protein
1596	 59.33	0	1726025..1726528	+	167	56751604	-	syc1595_d	-	hypothetical protein
1597	 52.58	0	1726613..1726825	-	70	56751605	infA	syc1596_c	-	translation initiation factor IF-1
1598	 55.50	0	1726897..1727550	-	217	56751606	-	syc1597_c	-	hypothetical protein
1599	 58.06	0	1727560..1728756	-	398	56751607	ndbB	syc1598_c	-	type 2 NADH dehydrogenase
1600	 55.24	0	1728828..1729247	+	139	56751608	-	syc1599_d	-	hypothetical protein
1601	 56.94	0	1729287..1729985	+	232	56751609	cysH	syc1600_d	-	phosphoadenosine phosphosulfate reductase
1602	 56.62	0	1729998..1730654	-	218	56751610	-	syc1601_c	-	O-methyltransferase
1603	 59.49	0	1730643..1731116	+	157	56751611	-	syc1602_d	-	hypothetical protein
1604	 56.31	0	1731324..1732289	+	321	56751612	por	syc1603_d	-	protochlorophyllide oxidoreductase
1605	 55.98	0	1732540..1733784	+	414	56751613	-	syc1604_d	-	hypothetical protein
1606	 56.81	0	1733781..1734845	-	354	56751614	aroF	syc1605_c	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1607	 55.88	0	1735068..1735688	+	206	56751615	-	syc1606_d	-	hypothetical protein
1608	 58.54	0	1735729..1737069	+	446	56751616	-	syc1607_d	-	hypothetical protein
1609	 57.83	0	1737069..1738313	+	414	56751617	-	syc1608_d	-	flotillin
1610	 55.92	0	1738413..1738868	+	151	56751618	ndk	syc1609_d	-	nucleoside diphosphate kinase
1611	 58.00	0	1738898..1740097	+	399	56751619	livK	syc1610_d	-	branched-chain amino-acid ABC transport system periplasmic binding protein
1612	 58.17	0	1740097..1741038	+	313	56751620	livH	syc1611_d	-	integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD
1613	 61.26	+1	1741042..1741965	+	307	56751621	livM	syc1612_d	-	branched-chain amino acid transport system permease protein
1614	 57.35	0	1741962..1742723	+	253	56751622	livG	syc1613_d	-	component of ABC transporter for natural amino acids
1615	 57.56	0	1742716..1743429	+	237	56751623	livF	syc1614_d	-	branched-chain amino acid ABC transporter ATP-binding protein
1616	 54.54	0	1743835..1745772	-	645	56751624	gyrB	syc1615_c	-	DNA gyrase subunit B
1617	 54.61	0	1745900..1746820	+	306	56751625	miaA	syc1616_d	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1618	 54.43	0	1746915..1747151	-	78	56751626	-	syc1617_c	-	hypothetical protein
1619	 56.98	0	1747273..1747881	-	202	56751627	-	syc1618_c	-	hypothetical protein
1620	 54.79	0	1747953..1748171	-	72	56751628	-	syc1619_c	-	hypothetical protein
1621	 47.94	-1	1748479..1750059	+	526	56751629	-	syc1620_d	-	hypothetical protein
1622	 50.65	-1	1750795..1751487	+	230	56751630	-	syc1621_d	-	hypothetical protein
1623	 46.32	-2	1751704..1753104	+	466	56751631	-	syc1622_d	-	hypothetical protein
1624	 49.07	-1	1753716..1754948	+	410	56751632	-	syc1623_d	-	hypothetical protein
1625	 40.31	-2	1754936..1755838	+	300	56751633	-	syc1624_d	-	hypothetical protein
1626	 46.38	-2	1755843..1756394	-	183	56751634	-	syc1625_c	-	pilin-like protein
1627	 55.73	0	1756910..1757284	+	124	56751635	psb28	syc1626_d	-	photosystem II reaction center W protein
1628	 57.41	0	1757300..1758196	+	298	56751636	-	syc1627_d	-	hypothetical protein
1629	 57.94	0	1758193..1758570	-	125	56751637	-	syc1628_c	-	hypothetical protein
1630	 56.82	0	1758668..1760068	-	466	56751638	argH	syc1629_c	-	argininosuccinate lyase
1631	 52.47	0	1760176..1760337	-	53	56751639	-	syc1630_c	-	hypothetical protein
1632	 58.68	0	1760393..1761781	-	462	56751640	-	syc1631_c	-	hypothetical protein
1633	 59.28	0	1761961..1763517	-	518	56751641	ffh	syc1632_c	-	signal recognition particle subunit SRP54
1634	 58.57	0	1763532..1764173	-	213	56751642	nusB	syc1633_c	-	transcription antitermination protein NusB
1635	 57.13	0	1764320..1765126	-	268	56751643	-	syc1634_c	-	hypothetical protein
1636	 56.29	0	1765311..1766081	-	256	56751644	-	syc1635_c	-	hypothetical protein
1637	 56.43	0	1766259..1768163	-	634	56751645	dnaK	syc1636_c	-	molecular chaperone DnaK
1638	 59.17	0	1768342..1769208	+	288	56751646	aroE	syc1637_d	-	shikimate 5-dehydrogenase
1639	 58.13	0	1769228..1769848	-	206	56751647	-	syc1638_c	-	two-component system response regulator
1640	 56.30	0	1770181..1770450	+	89	56751648	-	syc1639_d	-	hypothetical protein
1641	 59.08	0	1770619..1771317	+	232	56751649	-	syc1640_d	-	N-acetylmannosamine-6-phosphate 2-epimerase
1642	 56.30	0	1771414..1772667	+	417	161621816	metK	syc1641_d	-	S-adenosylmethionine synthetase
1643	 55.74	0	1772679..1773959	+	426	56751651	xylB	syc1642_d	-	sugar kinase
1644	 47.28	-2	1774048..1775481	+	477	56751652	-	syc1643_d	-	hypothetical protein
1645	 44.16	-2	1775604..1776878	+	424	56751653	-	syc1644_d	-	hypothetical protein
1646	 39.94	-2	1777075..1778163	-	362	56751654	-	syc1645_c	-	hypothetical protein
1647	 59.21	0	1778427..1780613	-	728	56751655	comE	syc1646_c	-	competence protein ComE
1648	 55.40	0	1780667..1781545	-	292	56751656	glyQ	syc1647_c	-	glycyl-tRNA synthetase subunit alpha
1649	 59.20	0	1781660..1782610	-	316	56751657	-	syc1648_c	-	hypothetical protein
1650	 59.24	0	1782617..1783249	-	210	56751658	-	syc1649_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.