IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1452	 47.59	-2	1571522..1571956	+	144	56751460	pilA	syc1451_d	-	a part of pilin polypeptide PilA
1453	 51.33	-1	1572002..1574368	-	788	56751461	-	syc1452_c	-	hypothetical protein
1454	 51.64	-1	1574376..1575719	-	447	56751462	-	syc1453_c	-	hypothetical protein
1455	 52.80	0	1575956..1577311	-	451	56751463	-	syc1454_c	-	hypothetical protein
1456	 57.74	0	1577406..1579343	-	645	56751464	-	syc1455_c	-	hypothetical protein
1457	 59.02	0	1579387..1579752	+	121	56751465	-	syc1456_d	-	hypothetical protein
1458	 56.12	0	1579792..1580028	+	78	56751466	rpmB	syc1457_d	-	50S ribosomal protein L28
1459	 58.03	0	1580138..1581538	-	466	56751467	-	syc1458_c	-	transport protein
1460	 58.73	0	1581876..1582253	-	125	56751468	folB	syc1459_c	-	dihydroneopterin aldolase
1461	 56.85	0	1582338..1583753	-	471	56751469	gnd	syc1460_c	-	6-phosphogluconate dehydrogenase
1462	 56.81	0	1583928..1584404	-	158	56751470	mutT	syc1461_c	-	mutator MutT protein
1463	 54.48	0	1584757..1585683	-	308	56751471	-	syc1462_c	-	hypothetical protein
1464	 48.37	-1	1585761..1586525	+	254	56751472	-	syc1463_d	-	hypothetical protein
1465	 38.14	-2	1587377..1587709	+	110	56751473	-	syc1464_d	-	hypothetical protein
1466	 43.22	-2	1587681..1588034	+	117	56751474	-	syc1465_d	-	hypothetical protein
1467	 54.98	0	1588145..1589419	-	424	56751475	bioA	syc1466_c	-	N-acetylornithine aminotransferase
1468	 57.66	0	1589412..1590044	-	210	56751476	bioD	syc1467_c	-	dethiobiotin synthase
1469	 57.79	0	1590050..1590871	-	273	56751477	-	syc1468_c	-	hypothetical protein
1470	 59.48	0	1590868..1591521	-	217	56751478	-	syc1469_c	-	hypothetical protein
1471	 59.64	0	1591533..1592699	-	388	56751479	bioF	syc1470_c	-	7-keto-8-aminopelargonic acid synthetase
1472	 58.69	0	1592824..1593801	+	325	56751480	-	syc1471_d	-	hypothetical protein
1473	 60.31	+1	1593761..1595161	-	466	56751481	-	syc1472_c	-	hypothetical protein
1474	 58.44	0	1595512..1596702	+	396	56751482	-	syc1473_d	-	hypothetical protein
1475	 56.43	0	1596762..1597826	+	354	56751483	-	syc1474_d	-	H+/Ca2+ exchanger
1476	 58.13	0	1597798..1599003	+	401	56751484	-	syc1475_d	-	hypothetical protein
1477	 54.39	0	1599009..1599749	+	246	56751485	cobK	syc1476_d	-	cobalt-precorrin-6x reductase
1478	 59.04	0	1599791..1600393	-	200	56751486	-	syc1477_c	-	hypothetical protein
1479	 57.36	0	1600394..1602295	-	633	56751487	sir	syc1478_c	-	sulfite reductase subunit beta
1480	 58.44	0	1602491..1604677	+	728	56751488	glyS	syc1479_d	-	glycyl-tRNA synthetase subunit beta
1481	 56.21	0	1604690..1605253	+	187	56751489	eda	syc1480_d	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1482	 49.23	-1	1605279..1605863	-	194	56751490	-	syc1481_c	-	hypothetical protein
1483	 54.61	0	1606635..1607306	+	223	56751491	-	syc1482_d	-	putative hydroxylase
1484	 45.22	-2	1607472..1607816	+	114	56751492	-	syc1483_d	-	hypothetical protein
1485	 52.54	0	1607855..1608562	-	235	56751493	-	syc1484_c	-	hypothetical protein
1486	 55.86	0	1608919..1609242	+	107	56751494	rpsF	syc1485_d	-	30S ribosomal protein S6
1487	 54.47	0	1609394..1609885	+	163	56751495	-	syc1486_d	-	hypothetical protein
1488	 58.05	0	1610005..1610631	+	208	56751496	-	syc1487_d	-	hypothetical protein
1489	 56.69	0	1610717..1611919	-	400	56751497	argG	syc1488_c	-	argininosuccinate synthase
1490	 59.88	0	1612024..1612347	+	107	56751498	-	syc1489_d	-	hypothetical protein
1491	 60.68	+1	1612344..1612694	+	116	56751499	-	syc1490_d	-	hypothetical protein
1492	 56.76	0	1612691..1613104	+	137	56751500	-	syc1491_d	-	hypothetical protein
1493	 56.08	0	1613177..1614772	+	531	56751501	-	syc1492_d	-	hypothetical protein
1494	 58.30	0	1614806..1616287	-	493	56751502	purF	syc1493_c	-	amidophosphoribosyltransferase
1495	 59.73	0	1616372..1618705	-	777	56751503	purL	syc1494_c	-	phosphoribosylformylglycinamidine synthase II
1496	 58.88	0	1618749..1619621	-	290	56751504	-	syc1495_c	-	RNA metabolism-related protein
1497	 57.03	0	1619646..1620818	-	390	56751505	dnaN	syc1496_c	-	DNA polymerase III subunit beta
1498	 53.41	0	1620916..1621737	+	273	56751506	cbbZp	syc1497_d	-	phosphoglycolate phosphatase
1499	 54.50	0	1621858..1622958	-	366	56751507	thrC	syc1498_c	-	threonine synthase
1500	 57.52	0	1623029..1623793	+	254	56751508	-	syc1499_d	-	hypothetical protein
1501	 57.01	0	1623878..1624633	+	251	56751509	cobA	syc1500_d	-	uroporphyrin-III C-methyltransferase
1502	 55.56	0	1624630..1625160	-	176	56751510	-	syc1501_c	-	hypothetical protein
1503	 54.94	0	1625362..1625796	-	144	56751511	-	syc1502_c	-	hypothetical protein
1504	 55.39	0	1625783..1626580	+	265	56751512	xthA	syc1503_d	-	exodeoxyribonuclease III
1505	 52.36	0	1626658..1628481	+	607	56751513	thrS	syc1504_d	-	threonyl-tRNA synthetase
1506	 47.64	-2	1628752..1629408	+	218	56751514	-	syc1505_d	-	hypothetical protein
1507	 43.20	-2	1629471..1630058	-	195	56751515	ctaE	syc1506_c	-	cytochrome c oxidase subunit III
1508	 49.14	-1	1630110..1631735	-	541	56751516	ctaD	syc1507_c	-	cytochrome c oxidase subunit I
1509	 52.22	0	1631795..1632742	-	315	56751517	ctaC	syc1508_c	-	cytochrome c oxidase subunit II
1510	 57.79	0	1632964..1633887	+	307	56751518	-	syc1509_d	-	hypothetical protein
1511	 61.02	+1	1633847..1634803	+	318	56751519	ctaB	syc1510_d	-	protoheme IX farnesyltransferase
1512	 55.37	0	1634947..1635300	+	117	56751520	-	syc1511_d	-	hypothetical protein
1513	 57.10	0	1635300..1636376	+	358	56751521	-	syc1512_d	-	hypothetical protein
1514	 55.42	0	1636373..1636852	-	159	56751522	-	syc1513_c	-	hypothetical protein
1515	 54.99	0	1636865..1637926	-	353	56751523	mviM	syc1514_c	-	oxidoreductase
1516	 56.39	0	1637978..1639408	-	476	56751524	-	syc1515_c	-	hypothetical protein
1517	 59.81	0	1639415..1640143	-	242	56751525	-	syc1516_c	-	hypothetical protein
1518	 61.08	+1	1640225..1640761	-	178	56751526	-	syc1517_c	-	hypothetical protein
1519	 58.13	0	1640861..1641469	+	202	56751527	pyrE	syc1518_d	-	orotate phosphoribosyltransferase
1520	 52.17	0	1641513..1642181	-	222	56751528	-	syc1519_c	-	hypothetical protein
1521	 54.65	0	1642178..1642693	-	171	56751529	-	syc1520_c	-	pilin-like protein
1522	 57.12	0	1642938..1643723	-	261	56751530	-	syc1521_c	-	2-phosphosulfolactate phosphatase
1523	 58.71	0	1643854..1645374	+	506	56751531	ubiD	syc1522_d	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD
1524	 56.25	0	1645393..1645920	+	175	56751532	-	syc1523_d	-	hypothetical protein
1525	 46.80	-2	1645994..1646431	-	145	56751533	-	syc1524_c	-	hypothetical protein
1526	 53.49	0	1646558..1647073	+	171	56751534	-	syc1525_d	-	hypothetical protein
1527	 55.56	0	1647081..1647845	-	254	56751535	csgA	syc1526_c	-	short chain dehydrogenase
1528	 56.40	0	1647855..1648487	-	210	56751536	-	syc1527_c	-	hypothetical protein
1529	 56.08	0	1648575..1649396	-	273	56751537	impA	syc1528_c	-	myo-inositol-1(or 4)-monophosphatase
1530	 57.45	0	1649400..1649768	-	122	56751538	petF	syc1529_c	-	ferredoxin petF-like protein
1531	 57.91	0	1650077..1652326	+	749	56751539	dnaK	syc1530_d	-	molecular chaperone DnaK
1532	 56.61	0	1652336..1653220	+	294	56751540	dnaJ	syc1531_d	-	DnaJ protein
1533	 54.43	0	1653220..1653693	+	157	56751541	-	syc1532_d	-	hypothetical protein
1534	 58.87	0	1653694..1654617	+	307	56751542	murQ	syc1533_d	-	N-acetylmuramic acid-6-phosphate etherase
1535	 57.56	0	1654652..1656277	+	541	56751543	-	syc1534_d	-	hypothetical protein
1536	 52.55	0	1661682..1662623	-	313	56751544	mntC	syc1535_c	-	ABC-type manganese transport system substrate-binding protein MntC
1537	 56.75	0	1662684..1663439	+	251	56751545	mntA	syc1536_d	-	ABC-type manganese transport system ATP-binding protein MntA
1538	 52.47	0	1663440..1664270	+	276	56751546	mntB	syc1537_d	-	ABC-type manganese transport system membrane protein MntB
1539	 44.03	-2	1664409..1664726	+	105	56751547	-	syc1538_d	-	hypothetical protein
1540	 57.61	0	1664807..1666684	-	625	56751548	-	syc1539_c	-	penicillin-binding protein
1541	 53.02	0	1666754..1667962	+	402	56751549	tyrS	syc1540_d	-	tyrosyl-tRNA synthetase
1542	 58.23	0	1667966..1668688	+	240	56751550	pyrF	syc1541_d	-	orotidine 5'-phosphate decarboxylase
1543	 59.28	0	1668685..1669158	+	157	56751551	-	syc1542_d	-	hypothetical protein
1544	 57.93	0	1669170..1670153	-	327	56751552	thiL	syc1543_c	-	thiamine monophosphate kinase
1545	 56.85	0	1670167..1671297	-	376	56751553	ppiB	syc1544_c	-	peptidyl-prolyl cis-trans isomerase
1546	 53.76	0	1671394..1671951	+	185	56751554	efp	syc1545_d	-	elongation factor P
1547	 60.38	+1	1671993..1672469	+	158	56751555	accB	syc1546_d	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
1548	 60.27	+1	1672435..1675437	-	1000	56751556	-	syc1547_c	-	hypothetical protein
1549	 58.90	0	1675484..1676719	-	411	56751557	-	syc1548_c	-	aluminum resistance protein
1550	 55.32	0	1676804..1677640	+	278	56751558	desC	syc1549_d	-	delta-9 acyl-lipid desaturase
1551	 56.33	0	1677750..1678310	-	186	56751559	-	syc1550_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.