IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1402	 50.53	-1	1517237..1517614	+	125	56751410	-	syc1401_d	-	hypothetical protein
1403	 52.66	0	1517645..1518208	-	187	56751411	-	syc1402_c	-	hypothetical protein
1404	 56.93	0	1518289..1519623	-	444	56751412	ndbA	syc1403_c	-	type 2 NADH dehydrogenase
1405	 56.86	0	1519794..1520354	+	186	56751413	-	syc1404_d	-	hypothetical protein
1406	 59.39	0	1520351..1520680	-	109	56751414	-	syc1405_c	-	hypothetical protein
1407	 57.98	0	1520796..1522580	+	594	56751415	pyk	syc1406_d	-	pyruvate kinase
1408	 52.37	0	1522716..1526507	+	1263	56751416	cobN	syc1407_d	-	cobaltochelatase
1409	 53.26	0	1526597..1527118	+	173	56751417	-	syc1408_d	-	hypothetical protein
1410	 57.47	0	1527543..1528292	+	249	56751418	rpaA	syc1409_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1411	 58.25	0	1528271..1529209	-	312	56751419	holB	syc1410_c	-	DNA polymerase III subunit delta'
1412	 62.17	+1	1529206..1529739	-	177	56751420	tmk	syc1411_c	-	thymidylate kinase
1413	 48.56	-1	1529952..1530299	+	115	56751421	-	syc1412_d	-	hypothetical protein
1414	 60.78	+1	1530556..1531167	+	203	56751422	ycf21	syc1413_d	-	hypothetical protein
1415	 56.30	0	1531164..1532147	-	327	56751423	-	syc1414_c	-	transcription factor
1416	 57.41	0	1532267..1533001	+	244	56751424	clcD	syc1415_d	-	carboxymethylenebutenolidase
1417	 57.95	0	1533613..1534335	-	240	56751425	-	syc1416_c	-	hypothetical protein
1418	 57.61	0	1534407..1535918	+	503	56751426	-	syc1417_d	-	hypothetical protein
1419	 55.97	0	1535927..1538011	+	694	56751427	glgX	syc1418_d	-	glycogen operon protein GlgX-like protein
1420	 53.15	0	1538054..1538704	+	216	56751428	-	syc1419_d	-	hypothetical protein
1421	 60.09	+1	1538965..1539603	-	212	56751429	-	syc1420_c	-	hypothetical protein
1422	 58.08	0	1539663..1539860	-	65	56751430	-	syc1421_c	-	hypothetical protein
1423	 56.96	0	1539870..1541651	-	593	56751431	mdlB	syc1422_c	-	ATP-binding protein of ABC transporter
1424	 57.14	0	1541687..1541896	+	69	56751432	-	syc1423_d	-	hypothetical protein
1425	 58.74	0	1542012..1543235	+	407	56751433	-	syc1424_d	-	ABC transporter permease
1426	 57.72	0	1543299..1543745	+	148	56751434	ycf41	syc1425_d	-	hypothetical protein
1427	 57.11	0	1543820..1544269	+	149	56751435	-	syc1426_d	-	hypothetical protein
1428	 53.77	0	1544266..1544955	-	229	56751436	-	syc1427_c	-	hypothetical protein
1429	 51.44	-1	1545031..1545792	-	253	56751437	-	syc1428_c	-	hypothetical protein
1430	 59.06	0	1545795..1547108	-	437	56751438	pepP	syc1429_c	-	aminopeptidase P
1431	 56.13	0	1547170..1547577	+	135	56751439	-	syc1430_d	-	hypothetical protein
1432	 56.14	0	1547687..1548883	+	398	56751440	lytB	syc1431_d	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1433	 59.48	0	1548923..1549576	+	217	56751441	-	syc1432_d	-	hypothetical protein
1434	 59.58	0	1549744..1550943	+	399	56751442	degT	syc1433_d	-	pleiotropic regulatory protein
1435	 59.18	0	1550945..1551505	+	186	56751443	-	syc1434_d	-	hypothetical protein
1436	 58.91	0	1551939..1552892	+	317	56751444	-	syc1435_d	-	ATP-binding protein of ABC transporter
1437	 58.02	0	1552897..1553706	+	269	56751445	-	syc1436_d	-	ABC-2 type transport system permease protein
1438	 59.08	0	1553711..1555225	+	504	56751446	-	syc1437_d	-	hypothetical protein
1439	 53.15	0	1555342..1555896	+	184	56751447	infC	syc1438_d	-	translation initiation factor IF-3
1440	 52.38	0	1556177..1556617	+	146	56751448	-	syc1439_d	-	hypothetical protein
1441	 43.93	-2	1557641..1558414	+	257	56751449	rfbF	syc1440_d	-	glucose-1-phosphate cytidylyltransferase
1442	 54.11	0	1558411..1559517	+	368	56751450	rfbG	syc1441_d	-	CDP-glucose 4,6-dehydratase
1443	 52.75	0	1560037..1560582	+	181	56751451	rfbC	syc1442_d	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1444	 48.58	-1	1560579..1561811	+	410	56751452	-	syc1443_d	-	putative C-3 methyl transferase
1445	 43.00	-2	1561815..1562942	+	375	56751453	rfbE	syc1444_d	-	perosamine synthetase
1446	 43.36	-2	1563693..1564460	+	255	56751454	-	syc1445_d	-	hypothetical protein
1447	 34.81	-2	1564531..1565679	+	382	56751455	-	syc1446_d	-	hypothetical protein
1448	 40.08	-2	1565853..1566371	+	172	56751456	-	syc1447_d	-	hypothetical protein
1449	 36.09	-2	1566358..1568277	+	639	56751457	-	syc1448_d	-	SPY protein
1450	 41.58	-2	1568267..1570813	-	848	56751458	-	syc1449_c	-	hypothetical protein
1451	 46.67	-2	1570899..1571333	+	144	56751459	pilA	syc1450_d	-	a part of pilin polypeptide PilA
1452	 47.59	-2	1571522..1571956	+	144	56751460	pilA	syc1451_d	-	a part of pilin polypeptide PilA
1453	 51.33	-1	1572002..1574368	-	788	56751461	-	syc1452_c	-	hypothetical protein
1454	 51.64	-1	1574376..1575719	-	447	56751462	-	syc1453_c	-	hypothetical protein
1455	 52.80	0	1575956..1577311	-	451	56751463	-	syc1454_c	-	hypothetical protein
1456	 57.74	0	1577406..1579343	-	645	56751464	-	syc1455_c	-	hypothetical protein
1457	 59.02	0	1579387..1579752	+	121	56751465	-	syc1456_d	-	hypothetical protein
1458	 56.12	0	1579792..1580028	+	78	56751466	rpmB	syc1457_d	-	50S ribosomal protein L28
1459	 58.03	0	1580138..1581538	-	466	56751467	-	syc1458_c	-	transport protein
1460	 58.73	0	1581876..1582253	-	125	56751468	folB	syc1459_c	-	dihydroneopterin aldolase
1461	 56.85	0	1582338..1583753	-	471	56751469	gnd	syc1460_c	-	6-phosphogluconate dehydrogenase
1462	 56.81	0	1583928..1584404	-	158	56751470	mutT	syc1461_c	-	mutator MutT protein
1463	 54.48	0	1584757..1585683	-	308	56751471	-	syc1462_c	-	hypothetical protein
1464	 48.37	-1	1585761..1586525	+	254	56751472	-	syc1463_d	-	hypothetical protein
1465	 38.14	-2	1587377..1587709	+	110	56751473	-	syc1464_d	-	hypothetical protein
1466	 43.22	-2	1587681..1588034	+	117	56751474	-	syc1465_d	-	hypothetical protein
1467	 54.98	0	1588145..1589419	-	424	56751475	bioA	syc1466_c	-	N-acetylornithine aminotransferase
1468	 57.66	0	1589412..1590044	-	210	56751476	bioD	syc1467_c	-	dethiobiotin synthase
1469	 57.79	0	1590050..1590871	-	273	56751477	-	syc1468_c	-	hypothetical protein
1470	 59.48	0	1590868..1591521	-	217	56751478	-	syc1469_c	-	hypothetical protein
1471	 59.64	0	1591533..1592699	-	388	56751479	bioF	syc1470_c	-	7-keto-8-aminopelargonic acid synthetase
1472	 58.69	0	1592824..1593801	+	325	56751480	-	syc1471_d	-	hypothetical protein
1473	 60.31	+1	1593761..1595161	-	466	56751481	-	syc1472_c	-	hypothetical protein
1474	 58.44	0	1595512..1596702	+	396	56751482	-	syc1473_d	-	hypothetical protein
1475	 56.43	0	1596762..1597826	+	354	56751483	-	syc1474_d	-	H+/Ca2+ exchanger
1476	 58.13	0	1597798..1599003	+	401	56751484	-	syc1475_d	-	hypothetical protein
1477	 54.39	0	1599009..1599749	+	246	56751485	cobK	syc1476_d	-	cobalt-precorrin-6x reductase
1478	 59.04	0	1599791..1600393	-	200	56751486	-	syc1477_c	-	hypothetical protein
1479	 57.36	0	1600394..1602295	-	633	56751487	sir	syc1478_c	-	sulfite reductase subunit beta
1480	 58.44	0	1602491..1604677	+	728	56751488	glyS	syc1479_d	-	glycyl-tRNA synthetase subunit beta
1481	 56.21	0	1604690..1605253	+	187	56751489	eda	syc1480_d	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1482	 49.23	-1	1605279..1605863	-	194	56751490	-	syc1481_c	-	hypothetical protein
1483	 54.61	0	1606635..1607306	+	223	56751491	-	syc1482_d	-	putative hydroxylase
1484	 45.22	-2	1607472..1607816	+	114	56751492	-	syc1483_d	-	hypothetical protein
1485	 52.54	0	1607855..1608562	-	235	56751493	-	syc1484_c	-	hypothetical protein
1486	 55.86	0	1608919..1609242	+	107	56751494	rpsF	syc1485_d	-	30S ribosomal protein S6
1487	 54.47	0	1609394..1609885	+	163	56751495	-	syc1486_d	-	hypothetical protein
1488	 58.05	0	1610005..1610631	+	208	56751496	-	syc1487_d	-	hypothetical protein
1489	 56.69	0	1610717..1611919	-	400	56751497	argG	syc1488_c	-	argininosuccinate synthase
1490	 59.88	0	1612024..1612347	+	107	56751498	-	syc1489_d	-	hypothetical protein
1491	 60.68	+1	1612344..1612694	+	116	56751499	-	syc1490_d	-	hypothetical protein
1492	 56.76	0	1612691..1613104	+	137	56751500	-	syc1491_d	-	hypothetical protein
1493	 56.08	0	1613177..1614772	+	531	56751501	-	syc1492_d	-	hypothetical protein
1494	 58.30	0	1614806..1616287	-	493	56751502	purF	syc1493_c	-	amidophosphoribosyltransferase
1495	 59.73	0	1616372..1618705	-	777	56751503	purL	syc1494_c	-	phosphoribosylformylglycinamidine synthase II
1496	 58.88	0	1618749..1619621	-	290	56751504	-	syc1495_c	-	RNA metabolism-related protein
1497	 57.03	0	1619646..1620818	-	390	56751505	dnaN	syc1496_c	-	DNA polymerase III subunit beta
1498	 53.41	0	1620916..1621737	+	273	56751506	cbbZp	syc1497_d	-	phosphoglycolate phosphatase
1499	 54.50	0	1621858..1622958	-	366	56751507	thrC	syc1498_c	-	threonine synthase
1500	 57.52	0	1623029..1623793	+	254	56751508	-	syc1499_d	-	hypothetical protein
1501	 57.01	0	1623878..1624633	+	251	56751509	cobA	syc1500_d	-	uroporphyrin-III C-methyltransferase
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.