IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1360	 56.23	0	1473028..1473669	-	213	56751368	-	syc1359_c	-	hypothetical protein
1361	 58.64	0	1473842..1474165	+	107	56751369	-	syc1360_d	-	hypothetical protein
1362	 58.50	0	1474162..1474614	-	150	56751370	-	syc1361_c	-	hypothetical protein
1363	 56.27	0	1474899..1475879	+	326	56751371	pdhB	syc1362_d	-	pyruvate dehydrogenase E1 component beta subunit
1364	 58.57	0	1475916..1477310	+	464	56751372	secD	syc1363_d	-	preprotein translocase subunit SecD
1365	 55.56	0	1477320..1478264	+	314	56751373	secF	syc1364_d	-	preprotein translocase subunit SecF
1366	 57.14	0	1478251..1478649	+	132	56751374	-	syc1365_d	-	hypothetical protein
1367	 57.86	0	1478776..1480614	-	612	56751375	ilvB	syc1366_c	-	acetolactate synthase 3 catalytic subunit
1368	 58.37	0	1480864..1481466	-	200	56751376	-	syc1367_c	-	peptidase
1369	 57.90	0	1481604..1482767	-	387	56751377	hemH	syc1368_c	-	ferrochelatase
1370	 59.48	0	1482869..1484176	+	435	56751378	-	syc1369_d	-	phage integrase
1371	 59.75	0	1484231..1484866	+	211	56751379	rapQ	syc1370_d	-	methyltransferase
1372	 57.87	0	1484830..1486023	-	397	56751380	-	syc1371_c	-	hypothetical protein
1373	 58.10	0	1486128..1486967	-	279	56751381	-	syc1372_c	-	hypothetical protein
1374	 61.24	+1	1487112..1488161	+	349	56751382	-	syc1373_d	-	hypothetical protein
1375	 48.37	-1	1488387..1491212	+	941	56751383	-	syc1374_d	-	hypothetical protein
1376	 60.65	+1	1492005..1492436	-	143	56751384	-	syc1375_c	-	hypothetical protein
1377	 59.05	0	1492433..1493731	-	432	56751385	-	syc1376_c	-	hypothetical protein
1378	 56.05	0	1493824..1494492	-	222	56751386	ntcA	syc1377_c	-	2-oxoglutarate-dependent transcriptional activator
1379	 57.92	0	1494724..1495500	+	258	56751387	fabI	syc1378_d	-	enoyl-(acyl carrier protein) reductase
1380	 57.62	0	1495515..1496144	+	209	56751388	hisB	syc1379_d	-	imidazoleglycerol-phosphate dehydratase
1381	 58.50	0	1496213..1496812	+	199	56751389	-	syc1380_d	-	thiol methyltransferase 1
1382	 41.83	-2	1497474..1499051	+	525	56751390	-	syc1381_d	-	hypothetical protein
1383	 61.53	+1	1499643..1500869	+	408	56751391	-	syc1382_d	-	hypothetical protein
1384	 55.56	0	1500889..1501374	+	161	56751392	-	syc1383_d	-	hypothetical protein
1385	 59.32	0	1501590..1502147	+	185	56751393	-	syc1384_d	-	hypothetical protein
1386	 54.62	0	1502089..1502445	-	118	56751394	-	syc1385_c	-	hypothetical protein
1387	 56.77	0	1502455..1503939	-	494	56751395	gatB	syc1386_c	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1388	 37.24	-2	1504160..1505491	-	443	56751396	-	syc1387_c	-	thiol methyltransferase 1
1389	 56.72	0	1505609..1506583	-	324	56751397	cscK	syc1388_c	-	fructokinase
1390	 54.84	0	1506736..1507251	+	171	56751398	-	syc1389_d	-	hypothetical protein
1391	 55.11	0	1507184..1507555	-	123	56751399	-	syc1390_c	-	hypothetical protein
1392	 54.84	0	1507594..1507686	-	30	56751400	petL	syc1391_c	-	cytochrome b6-f complex subunit PetL
1393	 58.63	0	1507742..1509196	-	484	56751401	phrA	syc1392_c	-	DNA photolyase
1394	 57.21	0	1509275..1510870	-	531	56751402	dnaK	syc1393_c	-	heat shock protein DnaK
1395	 59.86	0	1510935..1511492	-	185	56751403	-	syc1394_c	-	hypothetical protein
1396	 54.28	0	1511499..1512047	-	182	56751404	-	syc1395_c	-	DNA-binding stress protein
1397	 60.54	+1	1512066..1512326	-	86	56751405	-	syc1396_c	-	hypothetical protein
1398	 58.21	0	1512499..1513917	+	472	56751406	-	syc1397_d	-	hypothetical protein
1399	 56.99	0	1513930..1514508	+	192	56751407	nadD	syc1398_d	-	nicotinic acid mononucleotide adenylyltransferase
1400	 52.99	0	1514505..1516229	+	574	56751408	nadE	syc1399_d	-	NAD synthetase
1401	 51.39	-1	1516426..1517250	+	274	56751409	-	syc1400_d	-	hypothetical protein
1402	 50.53	-1	1517237..1517614	+	125	56751410	-	syc1401_d	-	hypothetical protein
1403	 52.66	0	1517645..1518208	-	187	56751411	-	syc1402_c	-	hypothetical protein
1404	 56.93	0	1518289..1519623	-	444	56751412	ndbA	syc1403_c	-	type 2 NADH dehydrogenase
1405	 56.86	0	1519794..1520354	+	186	56751413	-	syc1404_d	-	hypothetical protein
1406	 59.39	0	1520351..1520680	-	109	56751414	-	syc1405_c	-	hypothetical protein
1407	 57.98	0	1520796..1522580	+	594	56751415	pyk	syc1406_d	-	pyruvate kinase
1408	 52.37	0	1522716..1526507	+	1263	56751416	cobN	syc1407_d	-	cobaltochelatase
1409	 53.26	0	1526597..1527118	+	173	56751417	-	syc1408_d	-	hypothetical protein
1410	 57.47	0	1527543..1528292	+	249	56751418	rpaA	syc1409_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1411	 58.25	0	1528271..1529209	-	312	56751419	holB	syc1410_c	-	DNA polymerase III subunit delta'
1412	 62.17	+1	1529206..1529739	-	177	56751420	tmk	syc1411_c	-	thymidylate kinase
1413	 48.56	-1	1529952..1530299	+	115	56751421	-	syc1412_d	-	hypothetical protein
1414	 60.78	+1	1530556..1531167	+	203	56751422	ycf21	syc1413_d	-	hypothetical protein
1415	 56.30	0	1531164..1532147	-	327	56751423	-	syc1414_c	-	transcription factor
1416	 57.41	0	1532267..1533001	+	244	56751424	clcD	syc1415_d	-	carboxymethylenebutenolidase
1417	 57.95	0	1533613..1534335	-	240	56751425	-	syc1416_c	-	hypothetical protein
1418	 57.61	0	1534407..1535918	+	503	56751426	-	syc1417_d	-	hypothetical protein
1419	 55.97	0	1535927..1538011	+	694	56751427	glgX	syc1418_d	-	glycogen operon protein GlgX-like protein
1420	 53.15	0	1538054..1538704	+	216	56751428	-	syc1419_d	-	hypothetical protein
1421	 60.09	+1	1538965..1539603	-	212	56751429	-	syc1420_c	-	hypothetical protein
1422	 58.08	0	1539663..1539860	-	65	56751430	-	syc1421_c	-	hypothetical protein
1423	 56.96	0	1539870..1541651	-	593	56751431	mdlB	syc1422_c	-	ATP-binding protein of ABC transporter
1424	 57.14	0	1541687..1541896	+	69	56751432	-	syc1423_d	-	hypothetical protein
1425	 58.74	0	1542012..1543235	+	407	56751433	-	syc1424_d	-	ABC transporter permease
1426	 57.72	0	1543299..1543745	+	148	56751434	ycf41	syc1425_d	-	hypothetical protein
1427	 57.11	0	1543820..1544269	+	149	56751435	-	syc1426_d	-	hypothetical protein
1428	 53.77	0	1544266..1544955	-	229	56751436	-	syc1427_c	-	hypothetical protein
1429	 51.44	-1	1545031..1545792	-	253	56751437	-	syc1428_c	-	hypothetical protein
1430	 59.06	0	1545795..1547108	-	437	56751438	pepP	syc1429_c	-	aminopeptidase P
1431	 56.13	0	1547170..1547577	+	135	56751439	-	syc1430_d	-	hypothetical protein
1432	 56.14	0	1547687..1548883	+	398	56751440	lytB	syc1431_d	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1433	 59.48	0	1548923..1549576	+	217	56751441	-	syc1432_d	-	hypothetical protein
1434	 59.58	0	1549744..1550943	+	399	56751442	degT	syc1433_d	-	pleiotropic regulatory protein
1435	 59.18	0	1550945..1551505	+	186	56751443	-	syc1434_d	-	hypothetical protein
1436	 58.91	0	1551939..1552892	+	317	56751444	-	syc1435_d	-	ATP-binding protein of ABC transporter
1437	 58.02	0	1552897..1553706	+	269	56751445	-	syc1436_d	-	ABC-2 type transport system permease protein
1438	 59.08	0	1553711..1555225	+	504	56751446	-	syc1437_d	-	hypothetical protein
1439	 53.15	0	1555342..1555896	+	184	56751447	infC	syc1438_d	-	translation initiation factor IF-3
1440	 52.38	0	1556177..1556617	+	146	56751448	-	syc1439_d	-	hypothetical protein
1441	 43.93	-2	1557641..1558414	+	257	56751449	rfbF	syc1440_d	-	glucose-1-phosphate cytidylyltransferase
1442	 54.11	0	1558411..1559517	+	368	56751450	rfbG	syc1441_d	-	CDP-glucose 4,6-dehydratase
1443	 52.75	0	1560037..1560582	+	181	56751451	rfbC	syc1442_d	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1444	 48.58	-1	1560579..1561811	+	410	56751452	-	syc1443_d	-	putative C-3 methyl transferase
1445	 43.00	-2	1561815..1562942	+	375	56751453	rfbE	syc1444_d	-	perosamine synthetase
1446	 43.36	-2	1563693..1564460	+	255	56751454	-	syc1445_d	-	hypothetical protein
1447	 34.81	-2	1564531..1565679	+	382	56751455	-	syc1446_d	-	hypothetical protein
1448	 40.08	-2	1565853..1566371	+	172	56751456	-	syc1447_d	-	hypothetical protein
1449	 36.09	-2	1566358..1568277	+	639	56751457	-	syc1448_d	-	SPY protein
1450	 41.58	-2	1568267..1570813	-	848	56751458	-	syc1449_c	-	hypothetical protein
1451	 46.67	-2	1570899..1571333	+	144	56751459	pilA	syc1450_d	-	a part of pilin polypeptide PilA
1452	 47.59	-2	1571522..1571956	+	144	56751460	pilA	syc1451_d	-	a part of pilin polypeptide PilA
1453	 51.33	-1	1572002..1574368	-	788	56751461	-	syc1452_c	-	hypothetical protein
1454	 51.64	-1	1574376..1575719	-	447	56751462	-	syc1453_c	-	hypothetical protein
1455	 52.80	0	1575956..1577311	-	451	56751463	-	syc1454_c	-	hypothetical protein
1456	 57.74	0	1577406..1579343	-	645	56751464	-	syc1455_c	-	hypothetical protein
1457	 59.02	0	1579387..1579752	+	121	56751465	-	syc1456_d	-	hypothetical protein
1458	 56.12	0	1579792..1580028	+	78	56751466	rpmB	syc1457_d	-	50S ribosomal protein L28
1459	 58.03	0	1580138..1581538	-	466	56751467	-	syc1458_c	-	transport protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.