IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1331	 35.28	-2	1442461..1443333	+	290	56751339	-	syc1330_d	-	hypothetical protein
1332	 49.14	-1	1443788..1444135	-	115	56751340	-	syc1331_c	-	protein secretion chaperonin CsaA
1333	 56.86	0	1444268..1445389	+	373	56751341	-	syc1332_d	-	ABC transporter ATP-binding protein
1334	 56.91	0	1445386..1446174	+	262	56751342	-	syc1333_d	-	hypothetical protein
1335	 51.74	-1	1446171..1446572	-	133	56751343	-	syc1334_c	-	hypothetical protein
1336	 60.75	+1	1446894..1447772	-	292	56751344	-	syc1335_c	-	tetrapyrrole methylase family protein
1337	 59.08	0	1447812..1448681	+	289	56751345	cysQ	syc1336_d	-	ammonium transport protein
1338	 57.02	0	1448968..1450086	-	372	56751346	cysM	syc1337_c	-	cysteine synthase A
1339	 55.52	0	1450536..1452707	-	723	56751347	glnN	syc1338_c	-	glutamine synthetase type III
1340	 61.76	+1	1453135..1453827	-	230	56751348	-	syc1339_c	-	hypothetical protein
1341	 58.39	0	1454447..1455400	-	317	56751349	-	syc1340_c	-	hypothetical protein
1342	 58.88	0	1455397..1455897	-	166	56751350	ycf36	syc1341_c	-	hypothetical protein
1343	 54.76	0	1455916..1456335	-	139	56751351	-	syc1342_c	-	hypothetical protein
1344	 55.07	0	1456373..1457122	-	249	56751352	-	syc1343_c	-	hypothetical protein
1345	 56.13	0	1457128..1457478	-	116	56751353	-	syc1344_c	-	hypothetical protein
1346	 59.85	0	1457577..1458119	-	180	56751354	-	syc1345_c	-	hypothetical protein
1347	 56.41	0	1458222..1459157	-	311	56751355	era	syc1346_c	-	GTP-binding protein Era
1348	 57.01	0	1459251..1459685	+	144	56751356	-	syc1347_d	-	hypothetical protein
1349	 57.23	0	1459712..1460887	+	391	56751357	moeB	syc1348_d	-	hypothetical protein
1350	 57.80	0	1461323..1461841	+	172	56751358	-	syc1349_d	-	hypothetical protein
1351	 58.09	0	1462042..1463673	+	543	56751359	-	syc1350_d	-	phosphoglucomutase
1352	 59.22	0	1463926..1464543	-	205	56751360	-	syc1351_c	-	fibrillin
1353	 54.96	0	1464576..1464857	+	93	56751361	-	syc1352_d	-	hypothetical protein
1354	 58.54	0	1464863..1465969	+	368	56751362	mraY	syc1353_d	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1355	 56.13	0	1465966..1468356	-	796	56751363	-	syc1354_c	-	two-component response regulator
1356	 56.91	0	1469148..1470131	+	327	56751364	-	syc1355_d	-	alphaalpha-trehalose-phosphate synthase
1357	 54.66	0	1470139..1470696	+	185	56751365	-	syc1356_d	-	ADA regulatory protein
1358	 51.59	-1	1470693..1472237	-	514	56751366	-	syc1357_c	-	hypothetical protein
1359	 53.45	0	1472392..1472724	+	110	56751367	-	syc1358_d	-	hypothetical protein
1360	 56.23	0	1473028..1473669	-	213	56751368	-	syc1359_c	-	hypothetical protein
1361	 58.64	0	1473842..1474165	+	107	56751369	-	syc1360_d	-	hypothetical protein
1362	 58.50	0	1474162..1474614	-	150	56751370	-	syc1361_c	-	hypothetical protein
1363	 56.27	0	1474899..1475879	+	326	56751371	pdhB	syc1362_d	-	pyruvate dehydrogenase E1 component beta subunit
1364	 58.57	0	1475916..1477310	+	464	56751372	secD	syc1363_d	-	preprotein translocase subunit SecD
1365	 55.56	0	1477320..1478264	+	314	56751373	secF	syc1364_d	-	preprotein translocase subunit SecF
1366	 57.14	0	1478251..1478649	+	132	56751374	-	syc1365_d	-	hypothetical protein
1367	 57.86	0	1478776..1480614	-	612	56751375	ilvB	syc1366_c	-	acetolactate synthase 3 catalytic subunit
1368	 58.37	0	1480864..1481466	-	200	56751376	-	syc1367_c	-	peptidase
1369	 57.90	0	1481604..1482767	-	387	56751377	hemH	syc1368_c	-	ferrochelatase
1370	 59.48	0	1482869..1484176	+	435	56751378	-	syc1369_d	-	phage integrase
1371	 59.75	0	1484231..1484866	+	211	56751379	rapQ	syc1370_d	-	methyltransferase
1372	 57.87	0	1484830..1486023	-	397	56751380	-	syc1371_c	-	hypothetical protein
1373	 58.10	0	1486128..1486967	-	279	56751381	-	syc1372_c	-	hypothetical protein
1374	 61.24	+1	1487112..1488161	+	349	56751382	-	syc1373_d	-	hypothetical protein
1375	 48.37	-1	1488387..1491212	+	941	56751383	-	syc1374_d	-	hypothetical protein
1376	 60.65	+1	1492005..1492436	-	143	56751384	-	syc1375_c	-	hypothetical protein
1377	 59.05	0	1492433..1493731	-	432	56751385	-	syc1376_c	-	hypothetical protein
1378	 56.05	0	1493824..1494492	-	222	56751386	ntcA	syc1377_c	-	2-oxoglutarate-dependent transcriptional activator
1379	 57.92	0	1494724..1495500	+	258	56751387	fabI	syc1378_d	-	enoyl-(acyl carrier protein) reductase
1380	 57.62	0	1495515..1496144	+	209	56751388	hisB	syc1379_d	-	imidazoleglycerol-phosphate dehydratase
1381	 58.50	0	1496213..1496812	+	199	56751389	-	syc1380_d	-	thiol methyltransferase 1
1382	 41.83	-2	1497474..1499051	+	525	56751390	-	syc1381_d	-	hypothetical protein
1383	 61.53	+1	1499643..1500869	+	408	56751391	-	syc1382_d	-	hypothetical protein
1384	 55.56	0	1500889..1501374	+	161	56751392	-	syc1383_d	-	hypothetical protein
1385	 59.32	0	1501590..1502147	+	185	56751393	-	syc1384_d	-	hypothetical protein
1386	 54.62	0	1502089..1502445	-	118	56751394	-	syc1385_c	-	hypothetical protein
1387	 56.77	0	1502455..1503939	-	494	56751395	gatB	syc1386_c	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1388	 37.24	-2	1504160..1505491	-	443	56751396	-	syc1387_c	-	thiol methyltransferase 1
1389	 56.72	0	1505609..1506583	-	324	56751397	cscK	syc1388_c	-	fructokinase
1390	 54.84	0	1506736..1507251	+	171	56751398	-	syc1389_d	-	hypothetical protein
1391	 55.11	0	1507184..1507555	-	123	56751399	-	syc1390_c	-	hypothetical protein
1392	 54.84	0	1507594..1507686	-	30	56751400	petL	syc1391_c	-	cytochrome b6-f complex subunit PetL
1393	 58.63	0	1507742..1509196	-	484	56751401	phrA	syc1392_c	-	DNA photolyase
1394	 57.21	0	1509275..1510870	-	531	56751402	dnaK	syc1393_c	-	heat shock protein DnaK
1395	 59.86	0	1510935..1511492	-	185	56751403	-	syc1394_c	-	hypothetical protein
1396	 54.28	0	1511499..1512047	-	182	56751404	-	syc1395_c	-	DNA-binding stress protein
1397	 60.54	+1	1512066..1512326	-	86	56751405	-	syc1396_c	-	hypothetical protein
1398	 58.21	0	1512499..1513917	+	472	56751406	-	syc1397_d	-	hypothetical protein
1399	 56.99	0	1513930..1514508	+	192	56751407	nadD	syc1398_d	-	nicotinic acid mononucleotide adenylyltransferase
1400	 52.99	0	1514505..1516229	+	574	56751408	nadE	syc1399_d	-	NAD synthetase
1401	 51.39	-1	1516426..1517250	+	274	56751409	-	syc1400_d	-	hypothetical protein
1402	 50.53	-1	1517237..1517614	+	125	56751410	-	syc1401_d	-	hypothetical protein
1403	 52.66	0	1517645..1518208	-	187	56751411	-	syc1402_c	-	hypothetical protein
1404	 56.93	0	1518289..1519623	-	444	56751412	ndbA	syc1403_c	-	type 2 NADH dehydrogenase
1405	 56.86	0	1519794..1520354	+	186	56751413	-	syc1404_d	-	hypothetical protein
1406	 59.39	0	1520351..1520680	-	109	56751414	-	syc1405_c	-	hypothetical protein
1407	 57.98	0	1520796..1522580	+	594	56751415	pyk	syc1406_d	-	pyruvate kinase
1408	 52.37	0	1522716..1526507	+	1263	56751416	cobN	syc1407_d	-	cobaltochelatase
1409	 53.26	0	1526597..1527118	+	173	56751417	-	syc1408_d	-	hypothetical protein
1410	 57.47	0	1527543..1528292	+	249	56751418	rpaA	syc1409_d	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
1411	 58.25	0	1528271..1529209	-	312	56751419	holB	syc1410_c	-	DNA polymerase III subunit delta'
1412	 62.17	+1	1529206..1529739	-	177	56751420	tmk	syc1411_c	-	thymidylate kinase
1413	 48.56	-1	1529952..1530299	+	115	56751421	-	syc1412_d	-	hypothetical protein
1414	 60.78	+1	1530556..1531167	+	203	56751422	ycf21	syc1413_d	-	hypothetical protein
1415	 56.30	0	1531164..1532147	-	327	56751423	-	syc1414_c	-	transcription factor
1416	 57.41	0	1532267..1533001	+	244	56751424	clcD	syc1415_d	-	carboxymethylenebutenolidase
1417	 57.95	0	1533613..1534335	-	240	56751425	-	syc1416_c	-	hypothetical protein
1418	 57.61	0	1534407..1535918	+	503	56751426	-	syc1417_d	-	hypothetical protein
1419	 55.97	0	1535927..1538011	+	694	56751427	glgX	syc1418_d	-	glycogen operon protein GlgX-like protein
1420	 53.15	0	1538054..1538704	+	216	56751428	-	syc1419_d	-	hypothetical protein
1421	 60.09	+1	1538965..1539603	-	212	56751429	-	syc1420_c	-	hypothetical protein
1422	 58.08	0	1539663..1539860	-	65	56751430	-	syc1421_c	-	hypothetical protein
1423	 56.96	0	1539870..1541651	-	593	56751431	mdlB	syc1422_c	-	ATP-binding protein of ABC transporter
1424	 57.14	0	1541687..1541896	+	69	56751432	-	syc1423_d	-	hypothetical protein
1425	 58.74	0	1542012..1543235	+	407	56751433	-	syc1424_d	-	ABC transporter permease
1426	 57.72	0	1543299..1543745	+	148	56751434	ycf41	syc1425_d	-	hypothetical protein
1427	 57.11	0	1543820..1544269	+	149	56751435	-	syc1426_d	-	hypothetical protein
1428	 53.77	0	1544266..1544955	-	229	56751436	-	syc1427_c	-	hypothetical protein
1429	 51.44	-1	1545031..1545792	-	253	56751437	-	syc1428_c	-	hypothetical protein
1430	 59.06	0	1545795..1547108	-	437	56751438	pepP	syc1429_c	-	aminopeptidase P
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.