IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1226	 50.54	-1	1338292..1338750	-	152	56751234	-	syc1225_c	-	hypothetical protein
1227	 52.07	0	1339041..1339403	-	120	56751235	-	syc1226_c	-	hypothetical protein
1228	 56.73	0	1339488..1339829	-	113	56751236	ccmK	syc1227_c	-	carbon dioxide concentrating mechanism protein CcmK
1229	 52.75	0	1339874..1340182	-	102	56751237	ccmK	syc1228_c	-	carbon dioxide concentrating mechanism protein ccmK
1230	 57.41	0	1340260..1341264	+	334	56751238	-	syc1229_d	-	nitrogen regulation protein NifR3-like protein
1231	 57.53	0	1341365..1341550	-	61	56751239	gylA	syc1230_c	-	serine hydroxymethyltransferase
1232	 59.11	0	1341461..1342744	+	427	161621817	glyA	syc1231_d	-	serine hydroxymethyltransferase
1233	 58.66	0	1342767..1343840	+	357	56751241	-	syc1232_d	-	glycosyltransferase
1234	 59.72	0	1343850..1345115	+	421	56751242	cinA	syc1233_d	-	competence damage-inducible protein A
1235	 57.38	0	1345125..1346729	-	534	56751243	hoxF	syc1234_c	-	NADH dehydrogenase I chain F
1236	 57.43	0	1346729..1347226	-	165	56751244	-	syc1235_c	-	bidirectional hydrogenase complex protein HoxE
1237	 58.82	0	1347351..1349390	+	679	56751245	ligA	syc1236_d	-	NAD-dependent DNA ligase LigA
1238	 53.87	0	1349422..1350882	+	486	56751246	glcD	syc1237_d	-	glycolate oxidase subunit GlcD
1239	 42.34	-2	1350894..1351226	-	110	56751247	-	syc1238_c	-	hypothetical protein
1240	 42.18	-2	1351216..1351554	-	112	56751248	-	syc1239_c	-	hypothetical protein
1241	 55.08	0	1351592..1352221	-	209	56751249	-	syc1240_c	-	hypothetical protein
1242	 57.23	0	1352200..1352994	-	264	56751250	hemD	syc1241_c	-	porphyrin biosynthesis protein HemD
1243	 58.47	0	1352987..1353718	-	243	56751251	cobA	syc1242_c	-	uroporphyrin-III C-methyltransferase
1244	 58.33	0	1353715..1354926	-	403	56751252	-	syc1243_c	-	glycosyltransferase
1245	 58.75	0	1354948..1355907	+	319	56751253	-	syc1244_d	-	hypothetical protein
1246	 55.90	0	1355919..1356401	+	160	56751254	-	syc1245_d	-	hypothetical protein
1247	 58.44	0	1356398..1357126	-	242	56751255	gidB	syc1246_c	-	glucose-inhibited division protein B
1248	 59.35	0	1357658..1358245	+	195	56751256	dnaJ	syc1247_d	-	DnaJ protein
1249	 56.88	0	1358223..1358498	+	91	56751257	-	syc1248_d	-	hypothetical protein
1250	 55.95	0	1358511..1359266	-	251	56751258	uppS	syc1249_c	-	undecaprenyl pyrophosphate synthetase
1251	 54.07	0	1359263..1360183	-	306	56751259	-	syc1250_c	-	hypothetical protein
1252	 57.99	0	1360263..1361657	-	464	56751260	lysA	syc1251_c	-	diaminopimelate decarboxylase
1253	 59.00	0	1361705..1362304	+	199	56751261	rimI	syc1252_d	-	ribosomal-protein-alanine acetyltransferase
1254	 56.35	0	1362403..1364922	+	839	56751262	clpC	syc1253_d	-	ATP-dependent Clp protease regulatory subunit ClpC
1255	 53.45	0	1365077..1365409	-	110	56751263	-	syc1254_c	-	hypothetical protein
1256	 52.61	0	1365549..1365989	-	146	56751264	-	syc1255_c	-	hypothetical protein
1257	 55.47	0	1366038..1366787	+	249	56751265	-	syc1256_d	-	hypothetical protein
1258	 55.94	0	1366854..1367981	-	375	56751266	ama	syc1257_c	-	N-acyl-L-amino acid amidohydrolase
1259	 54.06	0	1368041..1369381	+	446	56751267	-	syc1258_d	-	hypothetical protein
1260	 58.58	0	1369455..1372025	-	856	56751268	gyrA	syc1259_c	-	DNA gyrase subunit A
1261	 58.49	0	1372225..1372713	+	162	56751269	-	syc1260_d	-	hypothetical protein
1262	 56.58	0	1372748..1372975	+	75	56751270	cp12	syc1261_d	-	hypothetical protein
1263	 57.85	0	1373004..1373774	-	256	56751271	-	syc1262_c	-	hypothetical protein
1264	 59.83	0	1373778..1374245	-	155	56751272	-	syc1263_c	-	hypothetical protein
1265	 59.67	0	1374248..1375033	-	261	56751273	bgtA	syc1264_c	-	ABC-type permease for basic amino acids and glutamine
1266	 58.44	0	1375052..1376242	-	396	56751274	-	syc1265_c	-	permease protein of amino acid ABC transporter
1267	 58.33	0	1376244..1377383	-	379	56751275	bgtB	syc1266_c	-	ABC-type permease for basic amino acids and glutamine
1268	 55.19	0	1377384..1378463	-	359	56751276	-	syc1267_c	-	polar amino acid transport system substrate-binding proetin
1269	 56.69	0	1378655..1379716	+	353	56751277	gap1	syc1268_d	-	glyceraldehyde 3-phosphate dehydrogenase
1270	 56.73	0	1379728..1382262	+	844	56751278	glgP	syc1269_d	-	glycogen phosphorylase
1271	 52.08	0	1382362..1382505	+	47	56751279	hliC	syc1270_d	-	high light inducible polypeptide HliC
1272	 55.53	0	1382607..1383719	+	370	56751280	-	syc1271_d	-	sodium/calcium exchanger protein
1273	 57.68	0	1384031..1385398	-	455	56751281	-	syc1272_c	-	RNA methyltransferase
1274	 58.13	0	1385543..1386034	+	163	56751282	apcD	syc1273_d	-	allophycocyanin alpha-B chain
1275	 56.39	0	1386195..1386554	+	119	56751283	petJ	syc1274_d	-	cytochrome C6 soluble cytochrome f
1276	 61.34	+1	1386561..1387742	+	393	56751284	-	syc1275_d	-	hypothetical protein
1277	 60.28	+1	1387742..1388320	+	192	56751285	-	syc1276_d	-	hypothetical protein
1278	 53.52	0	1388328..1388867	-	179	56751286	-	syc1277_c	-	hypothetical protein
1279	 51.94	0	1389208..1389723	-	171	56751287	-	syc1278_c	-	hypothetical protein
1280	 57.60	0	1389735..1390727	+	330	56751288	-	syc1279_d	-	hypothetical protein
1281	 46.95	-2	1390831..1391256	+	141	56751289	-	syc1280_d	-	hypothetical protein
1282	 58.57	0	1391600..1392946	+	448	56751290	aroA	syc1281_d	-	3-phosphoshikimate 1-carboxyvinyltransferase
1283	 56.57	0	1392954..1393478	+	174	56751291	-	syc1282_d	-	putative acetyltransferase
1284	 58.26	0	1393576..1394622	+	348	56751292	-	syc1283_d	-	hypothetical protein
1285	 50.26	-1	1394664..1395236	-	190	56751293	-	syc1284_c	-	hypothetical protein
1286	 55.56	0	1395341..1395601	-	86	56751294	-	syc1285_c	-	hypothetical protein
1287	 58.53	0	1395630..1396256	-	208	56751295	pth	syc1286_c	-	peptidyl-tRNA hydrolase
1288	 54.71	0	1396253..1396528	-	91	56751296	-	syc1287_c	-	hypothetical protein
1289	 55.39	0	1396622..1396825	-	67	56751297	psbH	syc1288_c	-	photosystem II reaction center protein H
1290	 49.65	-1	1396924..1397064	+	46	56751298	psbN	syc1289_d	-	photosystem II reaction center protein N
1291	 60.90	+1	1397487..1398353	-	288	56751299	-	syc1290_c	-	hypothetical protein
1292	 59.15	0	1398350..1399387	-	345	56751300	glk	syc1291_c	-	glucokinase
1293	 52.31	0	1399488..1400246	+	252	56751301	minD	syc1292_d	-	cell division inhibitor minD
1294	 59.19	0	1400249..1400569	+	106	56751302	-	syc1293_d	-	hypothetical protein
1295	 52.98	0	1400694..1400861	+	55	56751303	-	syc1294_d	-	hypothetical protein
1296	 56.60	0	1401014..1401778	-	254	56751304	-	syc1295_c	-	hypothetical protein
1297	 58.41	0	1401921..1402937	+	338	56751305	-	syc1296_d	-	putative zinc-binding oxidoreductase
1298	 56.15	0	1403072..1403461	+	129	56751306	-	syc1297_d	-	hypothetical protein
1299	 59.36	0	1403453..1404424	-	323	56751307	-	syc1298_c	-	hypothetical protein
1300	 54.21	0	1404696..1405241	+	181	56751308	-	syc1299_d	-	hypothetical protein
1301	 58.40	0	1405325..1406413	-	362	56751309	aroC	syc1300_c	-	chorismate synthase
1302	 59.01	0	1406500..1407975	-	491	56751310	cobQ	syc1301_c	-	cobyric acid synthase
1303	 60.78	+1	1407987..1408394	-	135	56751311	-	syc1302_c	-	hypothetical protein
1304	 57.89	0	1408434..1409060	+	208	56751312	maf	syc1303_d	-	Maf-like protein
1305	 58.19	0	1409057..1411828	-	923	56751313	-	syc1304_c	-	hypothetical protein
1306	 53.78	0	1412134..1413522	-	462	56751314	-	syc1305_c	-	putative nicotinate phosphoribosyltransferase
1307	 49.75	-1	1413670..1414686	-	338	56751315	-	syc1306_c	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1308	 58.49	0	1414838..1415302	+	154	56751316	-	syc1307_d	-	hypothetical protein
1309	 58.36	0	1415295..1416401	+	368	56751317	ribD	syc1308_d	-	riboflavin biosynthesis protein RibD
1310	 57.88	0	1416926..1418245	+	439	56751318	ccoN	syc1309_d	-	cb-type cytochrome c oxidase subunit I
1311	 58.57	0	1418242..1418994	+	250	56751319	-	syc1310_d	-	hypothetical protein
1312	 57.17	0	1419058..1419531	+	157	56751320	-	syc1311_d	-	hypothetical protein
1313	 59.44	0	1419531..1420457	+	308	56751321	-	syc1312_d	-	hypothetical protein
1314	 59.50	0	1420454..1421890	+	478	56751322	ndbC	syc1313_d	-	type 2 NADH dehydrogenase
1315	 58.45	0	1422058..1423311	+	417	56751323	-	syc1314_d	-	hypothetical protein
1316	 57.89	0	1423308..1424789	+	493	56751324	-	syc1315_d	-	lignostilbene-alpha beta-dioxygenase
1317	 56.41	0	1424825..1425253	-	142	56751325	-	syc1316_c	-	hypothetical protein
1318	 57.27	0	1425334..1428228	+	964	56751326	polA	syc1317_d	-	DNA polymerase I
1319	 56.44	0	1428412..1428636	+	74	56751327	-	syc1318_d	-	hypothetical protein
1320	 46.75	-2	1428697..1429173	+	158	56751328	ycf60	syc1319_d	-	hypothetical protein
1321	 58.83	0	1429263..1430411	-	382	56751329	-	syc1320_c	-	soluble hydrogenase 42 kD subunit DHSS
1322	 57.42	0	1430486..1431610	+	374	56751330	cbiD	syc1321_d	-	cobalt-precorrin-6A synthase
1323	 55.70	0	1431748..1433352	+	534	56751331	guaA	syc1322_d	-	bifunctional GMP synthase/glutamine amidotransferase protein
1324	 56.99	0	1433465..1435201	-	578	56751332	-	syc1323_c	-	hypothetical protein
1325	 54.79	0	1435422..1436465	+	347	56751333	-	syc1324_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.