IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1150	 55.07	0	1264466..1265017	-	183	56751158	-	syc1149_c	-	hypothetical protein
1151	 58.60	0	1265089..1265373	-	94	56751159	-	syc1150_c	-	hypothetical protein
1152	 56.83	0	1265399..1265998	-	199	56751160	-	syc1151_c	-	hypothetical protein
1153	 55.26	0	1266123..1266350	-	75	56751161	cp12	syc1152_c	-	hypothetical protein
1154	 59.06	0	1266583..1267779	+	398	56751162	-	syc1153_d	-	hypothetical protein
1155	 56.99	0	1267675..1268862	-	395	56751163	-	syc1154_c	-	hypothetical protein
1156	 57.48	0	1268932..1269573	+	213	56751164	trmB	syc1155_d	-	tRNA (guanine-N(7))-methyltransferase
1157	 59.47	0	1269604..1271007	+	467	56751165	-	syc1156_d	-	hypothetical protein
1158	 56.00	0	1271736..1271960	+	74	56751166	ycf33	syc1157_d	-	hypothetical protein
1159	 57.00	0	1272012..1272425	+	137	56751167	rbfA	syc1158_d	-	ribosome-binding factor A
1160	 54.83	0	1272488..1274050	+	520	56751168	bgl	syc1159_d	-	putative sugar hydrolase
1161	 57.54	0	1274450..1275424	-	324	56751169	-	syc1160_c	-	sodium-dependent transporter
1162	 58.46	0	1275451..1276059	+	202	56751170	-	syc1161_d	-	hypothetical protein
1163	 56.53	0	1276050..1277183	-	377	56751171	ycf22	syc1162_c	-	hypothetical protein
1164	 57.79	0	1277211..1278089	-	292	56751172	-	syc1163_c	-	ATP-binding protein of ABC transporter
1165	 56.15	0	1278439..1278999	+	186	56751173	-	syc1164_d	-	hypothetical protein
1166	 58.36	0	1279114..1280184	+	356	56751174	recA	syc1165_d	-	recombinase A
1167	 56.36	0	1280430..1280594	-	54	56751175	-	syc1166_c	-	hypothetical protein
1168	 59.10	0	1280751..1281530	-	259	56751176	-	syc1167_c	-	hypothetical protein
1169	 58.50	0	1281576..1282346	+	256	56751177	birA	syc1168_d	-	biotin [acetyl-CoA-carboxylase] ligase
1170	 58.81	0	1282431..1283474	+	347	56751178	-	syc1169_d	-	peptidase
1171	 56.62	0	1283827..1284234	-	135	56751179	psb27	syc1170_c	-	photosystem II 11 kD protein
1172	 54.46	0	1284292..1284627	-	111	56751180	-	syc1171_c	-	hypothetical protein
1173	 57.42	0	1284677..1285249	-	190	56751181	-	syc1172_c	-	hypothetical protein
1174	 58.93	0	1285230..1285811	-	193	56751182	-	syc1173_c	-	hypothetical protein
1175	 61.02	+1	1285808..1286887	-	359	56751183	-	syc1174_c	-	hypothetical protein
1176	 55.66	0	1287048..1287365	-	105	56751184	petF	syc1175_c	-	ferredoxin petF-like protein
1177	 57.62	0	1287474..1288424	-	316	56751185	atpC	syc1176_c	-	F0F1 ATP synthase subunit gamma
1178	 56.39	0	1288487..1290004	-	505	56751186	atpA	syc1177_c	-	F0F1 ATP synthase subunit alpha
1179	 53.04	0	1290051..1290593	-	180	56751187	atpD	syc1178_c	-	F0F1 ATP synthase subunit delta
1180	 55.05	0	1290603..1291127	-	174	56751188	atpF	syc1179_c	-	F0F1 ATP synthase subunit B
1181	 54.30	0	1291162..1291638	-	158	56751189	atpG	syc1180_c	-	F0F1 ATP synthase subunit B'
1182	 59.76	0	1291783..1292028	-	81	56751190	atpH	syc1181_c	-	F0F1 ATP synthase subunit C
1183	 54.71	0	1292171..1292956	-	261	56751191	atpI	syc1182_c	-	F0F1 ATP synthase subunit A
1184	 52.10	0	1292982..1293338	-	118	56751192	atp1	syc1183_c	-	ATP synthase protein I
1185	 58.37	0	1293525..1294778	-	417	56751193	-	syc1184_c	-	hypothetical protein
1186	 57.22	0	1294984..1297101	+	705	56751194	apcE	syc1185_d	-	phycobilisome core-membrane linker polypeptide
1187	 56.38	0	1297467..1297952	+	161	56751195	apcA	syc1186_d	-	allophycocyanin alpha chain
1188	 56.17	0	1298009..1298494	+	161	56751196	apcB	syc1187_d	-	allophycocyanin beta subunit
1189	 52.94	0	1298586..1298789	+	67	56751197	apcC	syc1188_d	-	phycobilisome core component
1190	 58.66	0	1299060..1300058	+	332	56751198	ftsW	syc1189_d	-	cell division protein FtsW
1191	 59.03	0	1300078..1300836	+	252	56751199	ccdA	syc1190_d	-	putative c-type cytochrome biogenesis protein CcdA
1192	 58.42	0	1300833..1302203	+	456	56751200	ccs1	syc1191_d	-	c-type cytochrome biogenesis protein
1193	 53.10	0	1302397..1302735	+	112	56751201	glnB	syc1192_d	-	nitrogen regulatory protein P-II
1194	 59.66	0	1302874..1303872	-	332	56751202	galE	syc1193_c	-	UDP-glucose 4-epimerase
1195	 59.46	0	1303902..1304720	-	272	56751203	-	syc1194_c	-	hemolysin-like protein
1196	 55.84	0	1304785..1305255	-	156	56751204	-	syc1195_c	-	hypothetical protein
1197	 57.63	0	1305527..1306024	-	165	56751205	-	syc1196_c	-	hypothetical protein
1198	 55.21	0	1306259..1306450	+	63	56751206	-	syc1197_d	-	hypothetical protein
1199	 57.68	0	1306535..1307803	+	422	56751207	purB	syc1198_d	-	adenylosuccinate lyase
1200	 54.76	0	1307850..1308479	+	209	56751208	-	syc1199_d	-	hypothetical protein
1201	 54.19	0	1308608..1309120	-	170	56751209	-	syc1200_c	-	hypothetical protein
1202	 59.09	0	1309219..1309614	+	131	56751210	-	syc1201_d	-	hypothetical protein
1203	 58.45	0	1309629..1310468	+	279	56751211	ksgA	syc1202_d	-	dimethyladenosine transferase
1204	 57.78	0	1310465..1311409	+	314	56751212	ispE	syc1203_d	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1205	 57.59	0	1311839..1313743	+	634	56751213	ndhF4	syc1204_d	-	NAD(P)H-quinone oxidoreductase subunit F
1206	 56.05	0	1313774..1314913	+	379	56751214	cupB	syc1205_d	-	protein involved in constitutive low affinity CO2 uptake
1207	 56.79	0	1314907..1316172	+	421	56751215	nhaS5	syc1206_d	-	Na+/H+ antiporter
1208	 51.46	-1	1316535..1316843	+	102	56751216	chlP	syc1207_d	-	geranylgeranyl hydrogenase
1209	 57.10	0	1317402..1318049	-	215	56751217	-	syc1208_c	-	hypothetical protein
1210	 57.30	0	1318185..1319273	-	362	56751218	-	syc1209_c	-	potassium channel protein
1211	 56.40	0	1319258..1320874	+	538	56751219	-	syc1210_d	-	DNA uptake protein and related DNA-binding proteins
1212	 56.89	0	1320892..1321290	-	132	56751220	ssb	syc1211_c	-	single-strand DNA-binding protein
1213	 58.96	0	1321447..1322484	+	345	56751221	-	syc1212_d	-	rod shape-determining protein MreB
1214	 59.73	0	1322509..1323258	+	249	56751222	-	syc1213_d	-	rod shape-determining protein MreC
1215	 56.73	0	1323219..1323902	+	227	56751223	-	syc1214_d	-	hypothetical protein
1216	 57.87	0	1324169..1326010	-	613	56751224	ftsH	syc1215_c	-	ATP-dependent Zn protease
1217	 59.80	0	1326117..1328156	-	679	56751225	-	syc1216_c	-	hypothetical protein
1218	 59.34	0	1328280..1329467	-	395	56751226	sat	syc1217_c	-	sulfate adenylyltransferase
1219	 56.83	0	1329657..1330490	-	277	56751227	psbO	syc1218_c	-	photosystem II PsbO protein
1220	 52.21	0	1330789..1331127	+	112	56751228	-	syc1219_d	-	hypothetical protein
1221	 58.19	0	1331124..1332350	-	408	56751229	dfp	syc1220_c	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1222	 54.34	0	1332354..1332572	-	72	56751230	-	syc1221_c	-	hypothetical protein
1223	 58.22	0	1332745..1333881	-	378	56751231	pyrD	syc1222_c	-	dihydroorotate dehydrogenase 2
1224	 55.43	0	1333890..1336736	-	948	56751232	secA	syc1223_c	-	preprotein translocase subunit SecA
1225	 55.41	0	1336922..1338280	+	452	56751233	glmU	syc1224_d	-	UDP-N-acetylglucosamine pyrophosphorylase
1226	 50.54	-1	1338292..1338750	-	152	56751234	-	syc1225_c	-	hypothetical protein
1227	 52.07	0	1339041..1339403	-	120	56751235	-	syc1226_c	-	hypothetical protein
1228	 56.73	0	1339488..1339829	-	113	56751236	ccmK	syc1227_c	-	carbon dioxide concentrating mechanism protein CcmK
1229	 52.75	0	1339874..1340182	-	102	56751237	ccmK	syc1228_c	-	carbon dioxide concentrating mechanism protein ccmK
1230	 57.41	0	1340260..1341264	+	334	56751238	-	syc1229_d	-	nitrogen regulation protein NifR3-like protein
1231	 57.53	0	1341365..1341550	-	61	56751239	gylA	syc1230_c	-	serine hydroxymethyltransferase
1232	 59.11	0	1341461..1342744	+	427	161621817	glyA	syc1231_d	-	serine hydroxymethyltransferase
1233	 58.66	0	1342767..1343840	+	357	56751241	-	syc1232_d	-	glycosyltransferase
1234	 59.72	0	1343850..1345115	+	421	56751242	cinA	syc1233_d	-	competence damage-inducible protein A
1235	 57.38	0	1345125..1346729	-	534	56751243	hoxF	syc1234_c	-	NADH dehydrogenase I chain F
1236	 57.43	0	1346729..1347226	-	165	56751244	-	syc1235_c	-	bidirectional hydrogenase complex protein HoxE
1237	 58.82	0	1347351..1349390	+	679	56751245	ligA	syc1236_d	-	NAD-dependent DNA ligase LigA
1238	 53.87	0	1349422..1350882	+	486	56751246	glcD	syc1237_d	-	glycolate oxidase subunit GlcD
1239	 42.34	-2	1350894..1351226	-	110	56751247	-	syc1238_c	-	hypothetical protein
1240	 42.18	-2	1351216..1351554	-	112	56751248	-	syc1239_c	-	hypothetical protein
1241	 55.08	0	1351592..1352221	-	209	56751249	-	syc1240_c	-	hypothetical protein
1242	 57.23	0	1352200..1352994	-	264	56751250	hemD	syc1241_c	-	porphyrin biosynthesis protein HemD
1243	 58.47	0	1352987..1353718	-	243	56751251	cobA	syc1242_c	-	uroporphyrin-III C-methyltransferase
1244	 58.33	0	1353715..1354926	-	403	56751252	-	syc1243_c	-	glycosyltransferase
1245	 58.75	0	1354948..1355907	+	319	56751253	-	syc1244_d	-	hypothetical protein
1246	 55.90	0	1355919..1356401	+	160	56751254	-	syc1245_d	-	hypothetical protein
1247	 58.44	0	1356398..1357126	-	242	56751255	gidB	syc1246_c	-	glucose-inhibited division protein B
1248	 59.35	0	1357658..1358245	+	195	56751256	dnaJ	syc1247_d	-	DnaJ protein
1249	 56.88	0	1358223..1358498	+	91	56751257	-	syc1248_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.