IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1107	 37.36	-2	1218858..1219130	+	90	56751116	-	syc1107_d	-	hypothetical protein
1108	 55.35	0	1219459..1220112	-	217	56751117	trpF	syc1108_c	-	N-(5'-phosphoribosyl)anthranilate isomerase
1109	 57.61	0	1220209..1220451	+	80	56751118	psaK	syc1109_d	-	photosystem I reaction center subunit X
1110	 54.98	0	1220526..1220927	-	133	56751119	-	syc1110_c	-	hypothetical protein
1111	 56.86	0	1221012..1222010	-	332	56751120	holA	syc1111_c	-	DNA polymerase III subunit delta
1112	 56.17	0	1222371..1223285	+	304	56751121	prfB	syc1112_d	-	peptide chain release factor 2
1113	 55.56	0	1223303..1223482	+	59	109150053	-	syc1112-da	-	hypothetical protein
1114	 56.00	0	1223484..1224008	+	174	56751122	-	syc1113_d	-	putative metalloprotease
1115	 59.26	0	1225149..1225634	+	161	56751123	dgkA	syc1114_d	-	diacylglycerol kinase
1116	 54.23	0	1225699..1226301	+	200	56751124	trpG	syc1115_d	-	anthranilate synthase component II
1117	 56.71	0	1226335..1227087	+	250	56751125	-	syc1116_d	-	hypothetical protein
1118	 52.72	0	1227432..1227890	-	152	56751126	-	syc1117_c	-	hypothetical protein
1119	 57.90	0	1227957..1229348	-	463	56751127	lim17	syc1118_c	-	putative neutral invertase
1120	 56.88	0	1229386..1230948	-	520	56751128	purH	syc1119_c	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1121	 56.44	0	1231262..1232386	-	374	56751129	-	syc1120_c	-	hypothetical protein
1122	 57.90	0	1232660..1233526	+	288	56751130	cdsA	syc1121_d	-	phosphatidate cytidylyltransferase
1123	 58.92	0	1233523..1234206	-	227	56751131	-	syc1122_c	-	hypothetical protein
1124	 61.26	+1	1234181..1235530	+	449	56751132	mltA	syc1123_d	-	membrane-bound lytic transglycosylase A
1125	 59.20	0	1235755..1237335	+	526	56751133	-	syc1124_d	-	hypothetical protein
1126	 58.51	0	1237426..1238577	+	383	56751134	chrA	syc1125_d	-	chromate transport protein
1127	 55.61	0	1238826..1240010	+	394	56751135	rfaG	syc1126_d	-	glycosyltransferase
1128	 57.99	0	1239979..1240485	-	168	56751136	-	syc1127_c	-	hypothetical protein
1129	 58.01	0	1240490..1241899	-	469	56751137	-	syc1128_c	-	hypothetical protein
1130	 56.84	0	1242186..1243559	+	457	56751138	chlP	syc1129_d	-	geranylgeranyl hydrogenase
1131	 54.33	0	1243730..1244353	+	207	56751139	-	syc1130_d	-	hypothetical protein
1132	 46.96	-2	1244429..1245118	+	229	56751140	-	syc1131_d	-	hypothetical protein
1133	 46.07	-2	1245158..1245424	+	88	56751141	-	syc1132_d	-	hypothetical protein
1134	 62.54	+1	1245534..1245848	+	104	56751142	-	syc1133_d	-	hypothetical protein
1135	 57.09	0	1246052..1247095	-	347	56751143	-	syc1134_c	-	hypothetical protein
1136	 55.21	0	1247117..1247500	-	127	56751144	-	syc1135_c	-	hypothetical protein
1137	 58.62	0	1247554..1248348	-	264	56751145	ycf63	syc1136_c	-	putative ABC transporter permease protein
1138	 59.00	0	1248674..1249012	+	112	56751146	-	syc1137_d	-	hypothetical protein
1139	 59.27	0	1249067..1250539	+	490	56751147	pqqE	syc1138_d	-	putative zinc protease protein
1140	 58.33	0	1250536..1251951	+	471	56751148	ymxG	syc1139_d	-	processing protease
1141	 49.45	-1	1252856..1253668	+	270	56751149	-	syc1140_d	-	hypothetical protein
1142	 49.44	-1	1254028..1254828	-	266	56751150	-	syc1141_c	-	hypothetical protein
1143	 53.33	0	1254866..1255765	-	299	56751151	metA	syc1142_c	-	homoserine O-succinyltransferase
1144	 56.32	0	1255814..1257118	-	434	56751152	metY	syc1143_c	-	O-acetylhomoserine (thiol)-lyase
1145	 58.14	0	1257280..1258734	-	484	56751153	-	syc1144_c	-	putative flavin-containing monoamine oxidase
1146	 58.80	0	1258837..1260171	-	444	56751154	xseA	syc1145_c	-	exodeoxyribonuclease VII large subunit
1147	 56.28	0	1260192..1261115	+	307	56751155	-	syc1146_d	-	sodium-dependent transporter
1148	 53.89	0	1261150..1263333	-	727	56751156	-	syc1147_c	-	putative sulfate transporter
1149	 51.90	-1	1263577..1264206	-	209	56751157	-	syc1148_c	-	two-component response regulator
1150	 55.07	0	1264466..1265017	-	183	56751158	-	syc1149_c	-	hypothetical protein
1151	 58.60	0	1265089..1265373	-	94	56751159	-	syc1150_c	-	hypothetical protein
1152	 56.83	0	1265399..1265998	-	199	56751160	-	syc1151_c	-	hypothetical protein
1153	 55.26	0	1266123..1266350	-	75	56751161	cp12	syc1152_c	-	hypothetical protein
1154	 59.06	0	1266583..1267779	+	398	56751162	-	syc1153_d	-	hypothetical protein
1155	 56.99	0	1267675..1268862	-	395	56751163	-	syc1154_c	-	hypothetical protein
1156	 57.48	0	1268932..1269573	+	213	56751164	trmB	syc1155_d	-	tRNA (guanine-N(7))-methyltransferase
1157	 59.47	0	1269604..1271007	+	467	56751165	-	syc1156_d	-	hypothetical protein
1158	 56.00	0	1271736..1271960	+	74	56751166	ycf33	syc1157_d	-	hypothetical protein
1159	 57.00	0	1272012..1272425	+	137	56751167	rbfA	syc1158_d	-	ribosome-binding factor A
1160	 54.83	0	1272488..1274050	+	520	56751168	bgl	syc1159_d	-	putative sugar hydrolase
1161	 57.54	0	1274450..1275424	-	324	56751169	-	syc1160_c	-	sodium-dependent transporter
1162	 58.46	0	1275451..1276059	+	202	56751170	-	syc1161_d	-	hypothetical protein
1163	 56.53	0	1276050..1277183	-	377	56751171	ycf22	syc1162_c	-	hypothetical protein
1164	 57.79	0	1277211..1278089	-	292	56751172	-	syc1163_c	-	ATP-binding protein of ABC transporter
1165	 56.15	0	1278439..1278999	+	186	56751173	-	syc1164_d	-	hypothetical protein
1166	 58.36	0	1279114..1280184	+	356	56751174	recA	syc1165_d	-	recombinase A
1167	 56.36	0	1280430..1280594	-	54	56751175	-	syc1166_c	-	hypothetical protein
1168	 59.10	0	1280751..1281530	-	259	56751176	-	syc1167_c	-	hypothetical protein
1169	 58.50	0	1281576..1282346	+	256	56751177	birA	syc1168_d	-	biotin [acetyl-CoA-carboxylase] ligase
1170	 58.81	0	1282431..1283474	+	347	56751178	-	syc1169_d	-	peptidase
1171	 56.62	0	1283827..1284234	-	135	56751179	psb27	syc1170_c	-	photosystem II 11 kD protein
1172	 54.46	0	1284292..1284627	-	111	56751180	-	syc1171_c	-	hypothetical protein
1173	 57.42	0	1284677..1285249	-	190	56751181	-	syc1172_c	-	hypothetical protein
1174	 58.93	0	1285230..1285811	-	193	56751182	-	syc1173_c	-	hypothetical protein
1175	 61.02	+1	1285808..1286887	-	359	56751183	-	syc1174_c	-	hypothetical protein
1176	 55.66	0	1287048..1287365	-	105	56751184	petF	syc1175_c	-	ferredoxin petF-like protein
1177	 57.62	0	1287474..1288424	-	316	56751185	atpC	syc1176_c	-	F0F1 ATP synthase subunit gamma
1178	 56.39	0	1288487..1290004	-	505	56751186	atpA	syc1177_c	-	F0F1 ATP synthase subunit alpha
1179	 53.04	0	1290051..1290593	-	180	56751187	atpD	syc1178_c	-	F0F1 ATP synthase subunit delta
1180	 55.05	0	1290603..1291127	-	174	56751188	atpF	syc1179_c	-	F0F1 ATP synthase subunit B
1181	 54.30	0	1291162..1291638	-	158	56751189	atpG	syc1180_c	-	F0F1 ATP synthase subunit B'
1182	 59.76	0	1291783..1292028	-	81	56751190	atpH	syc1181_c	-	F0F1 ATP synthase subunit C
1183	 54.71	0	1292171..1292956	-	261	56751191	atpI	syc1182_c	-	F0F1 ATP synthase subunit A
1184	 52.10	0	1292982..1293338	-	118	56751192	atp1	syc1183_c	-	ATP synthase protein I
1185	 58.37	0	1293525..1294778	-	417	56751193	-	syc1184_c	-	hypothetical protein
1186	 57.22	0	1294984..1297101	+	705	56751194	apcE	syc1185_d	-	phycobilisome core-membrane linker polypeptide
1187	 56.38	0	1297467..1297952	+	161	56751195	apcA	syc1186_d	-	allophycocyanin alpha chain
1188	 56.17	0	1298009..1298494	+	161	56751196	apcB	syc1187_d	-	allophycocyanin beta subunit
1189	 52.94	0	1298586..1298789	+	67	56751197	apcC	syc1188_d	-	phycobilisome core component
1190	 58.66	0	1299060..1300058	+	332	56751198	ftsW	syc1189_d	-	cell division protein FtsW
1191	 59.03	0	1300078..1300836	+	252	56751199	ccdA	syc1190_d	-	putative c-type cytochrome biogenesis protein CcdA
1192	 58.42	0	1300833..1302203	+	456	56751200	ccs1	syc1191_d	-	c-type cytochrome biogenesis protein
1193	 53.10	0	1302397..1302735	+	112	56751201	glnB	syc1192_d	-	nitrogen regulatory protein P-II
1194	 59.66	0	1302874..1303872	-	332	56751202	galE	syc1193_c	-	UDP-glucose 4-epimerase
1195	 59.46	0	1303902..1304720	-	272	56751203	-	syc1194_c	-	hemolysin-like protein
1196	 55.84	0	1304785..1305255	-	156	56751204	-	syc1195_c	-	hypothetical protein
1197	 57.63	0	1305527..1306024	-	165	56751205	-	syc1196_c	-	hypothetical protein
1198	 55.21	0	1306259..1306450	+	63	56751206	-	syc1197_d	-	hypothetical protein
1199	 57.68	0	1306535..1307803	+	422	56751207	purB	syc1198_d	-	adenylosuccinate lyase
1200	 54.76	0	1307850..1308479	+	209	56751208	-	syc1199_d	-	hypothetical protein
1201	 54.19	0	1308608..1309120	-	170	56751209	-	syc1200_c	-	hypothetical protein
1202	 59.09	0	1309219..1309614	+	131	56751210	-	syc1201_d	-	hypothetical protein
1203	 58.45	0	1309629..1310468	+	279	56751211	ksgA	syc1202_d	-	dimethyladenosine transferase
1204	 57.78	0	1310465..1311409	+	314	56751212	ispE	syc1203_d	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1205	 57.59	0	1311839..1313743	+	634	56751213	ndhF4	syc1204_d	-	NAD(P)H-quinone oxidoreductase subunit F
1206	 56.05	0	1313774..1314913	+	379	56751214	cupB	syc1205_d	-	protein involved in constitutive low affinity CO2 uptake
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.