IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1055	 55.96	0	1170355..1170924	+	189	56751064	-	syc1055_d	-	low molecular weight phosphotyrosine protein phosphatase
1056	 55.44	0	1170924..1171511	+	195	56751065	-	syc1056_d	-	hypothetical protein
1057	 57.76	0	1171568..1172005	+	145	56751066	-	syc1057_d	-	hypothetical protein
1058	 54.85	0	1172102..1172575	+	157	56751067	-	syc1058_d	-	putative acetyltransferase
1059	 55.95	0	1172715..1173824	+	369	56751068	-	syc1059_d	-	glutathione-dependent formaldehyde dehydrogenase
1060	 57.95	0	1173830..1174666	+	278	56751069	-	syc1060_d	-	putative esterase
1061	 46.76	-2	1174702..1175319	-	205	56751070	-	syc1061_c	-	hypothetical protein
1062	 53.62	0	1175535..1175672	-	45	56751071	psbK	syc1062_c	-	photosystem II reaction center protein K
1063	 57.74	0	1175726..1176946	-	406	56751072	tgt	syc1063_c	-	queuine tRNA-ribosyltransferase
1064	 58.73	0	1176909..1177664	+	251	56751073	cobS	syc1064_d	-	cobalamin synthase
1065	 56.72	0	1177645..1178871	-	408	56751074	-	syc1065_c	-	two-component sensor histidine kinase
1066	 51.60	-1	1179044..1179481	+	145	56751075	-	syc1066_d	-	hypothetical protein
1067	 60.00	0	1179581..1180210	-	209	56751076	-	syc1067_c	-	esterase
1068	 57.32	0	1180585..1180830	+	81	56751077	nifU	syc1068_d	-	putative NifU-like protein
1069	 58.04	0	1180919..1182205	+	428	161621818	serS	syc1069_d	-	seryl-tRNA synthetase
1070	 57.81	0	1182252..1183346	+	364	56751079	-	syc1070_d	-	hypothetical protein
1071	 57.35	0	1183343..1184029	+	228	56751080	nth	syc1071_d	-	DNA-(apurinic or apyrimidinic site) lyase
1072	 59.41	0	1184059..1184361	+	100	56751081	rpsN	syc1072_d	-	30S ribosomal protein S14
1073	 60.32	+1	1184442..1185497	+	351	56751082	oppC	syc1073_d	-	peptide transport system permease protein
1074	 59.36	0	1185840..1186523	+	227	56751083	-	syc1074_d	-	hypothetical protein
1075	 59.58	0	1186563..1187804	+	413	56751084	-	syc1075_d	-	hypothetical protein
1076	 54.81	0	1187929..1189446	-	505	56751085	amt1	syc1076_c	-	ammonium/methylammonium permease
1077	 58.89	0	1189689..1190357	-	222	56751086	purE	syc1077_c	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1078	 58.70	0	1190317..1191534	+	405	56751087	nagA	syc1078_d	-	N-acetylglucosamine-6-phosphate deacetylase
1079	 56.38	0	1191580..1192269	+	229	56751088	chlM	syc1079_d	-	Mg-protoporphyrin IX methyl transferase
1080	 40.92	-2	1192851..1193417	-	188	56751089	-	syc1080_c	-	putative glutathione peroxidase
1081	 54.25	0	1193730..1194035	-	101	56751090	-	syc1081_c	-	hypothetical protein
1082	 59.79	0	1194050..1194805	-	251	56751091	-	syc1082_c	-	hypothetical protein
1083	 54.66	0	1194816..1195823	-	335	56751092	-	syc1083_c	-	hypothetical protein
1084	 54.09	0	1196040..1197248	-	402	56751093	-	syc1084_c	-	hypothetical protein
1085	 56.37	0	1197635..1198333	-	232	56751094	-	syc1085_c	-	hypothetical protein
1086	 58.13	0	1198323..1199576	-	417	56751095	-	syc1086_c	-	hypothetical protein
1087	 57.30	0	1199588..1201498	-	636	56751096	dxs	syc1087_c	-	1-deoxy-D-xylulose-5-phosphate synthase
1088	 60.86	+1	1201597..1202199	+	200	56751097	-	syc1088_d	-	hypothetical protein
1089	 58.20	0	1202270..1203898	+	542	56751098	leuA	syc1089_d	-	alpha-isopropylmalate/homocitrate synthase family transferase
1090	 58.07	0	1203929..1204777	+	282	56751099	-	syc1090_d	-	ATP-binding protein of ABC transporter
1091	 56.52	0	1204794..1205345	+	183	56751100	-	syc1091_d	-	hypothetical protein
1092	 48.15	-1	1205439..1205816	+	125	56751101	-	syc1092_d	-	hypothetical protein
1093	 55.22	0	1205925..1207007	-	360	56751102	psbAI	syc1093_c	-	photosystem II D1 protein
1094	 54.79	0	1207266..1207484	+	72	56751103	-	syc1094_d	-	hypothetical protein
1095	 54.68	0	1207591..1208733	-	380	56751104	-	syc1095_c	-	hypothetical protein
1096	 56.47	0	1208931..1209332	+	133	56751105	-	syc1096_d	-	glutathione S-transferase
1097	 56.39	0	1209364..1210929	+	521	56751106	-	syc1097_d	-	hypothetical protein
1098	 59.81	0	1210977..1211939	+	320	56751107	bioB	syc1098_d	-	biotin synthetase
1099	 53.56	0	1212036..1212386	-	116	56751108	-	syc1099_c	-	hypothetical protein
1100	 55.60	0	1212521..1214029	-	502	56751109	-	syc1100_c	-	hypothetical protein
1101	 54.17	0	1214108..1214491	-	127	56751110	-	syc1101_c	-	hypothetical protein
1102	 58.28	0	1214735..1215712	+	325	56751111	-	syc1102_d	-	hypothetical protein
1103	 57.03	0	1215692..1216864	-	390	56751112	-	syc1103_c	-	hypothetical protein
1104	 56.00	0	1217304..1217528	+	74	56751113	ndhL	syc1104_d	-	NADH dehydrogenase subunit NdhL
1105	 57.88	0	1217529..1217858	+	109	56751114	-	syc1105_d	-	hypothetical protein
1106	 58.18	0	1217889..1218689	+	266	56751115	trpA	syc1106_d	-	tryptophan synthase subunit alpha
1107	 37.36	-2	1218858..1219130	+	90	56751116	-	syc1107_d	-	hypothetical protein
1108	 55.35	0	1219459..1220112	-	217	56751117	trpF	syc1108_c	-	N-(5'-phosphoribosyl)anthranilate isomerase
1109	 57.61	0	1220209..1220451	+	80	56751118	psaK	syc1109_d	-	photosystem I reaction center subunit X
1110	 54.98	0	1220526..1220927	-	133	56751119	-	syc1110_c	-	hypothetical protein
1111	 56.86	0	1221012..1222010	-	332	56751120	holA	syc1111_c	-	DNA polymerase III subunit delta
1112	 56.17	0	1222371..1223285	+	304	56751121	prfB	syc1112_d	-	peptide chain release factor 2
1113	 55.56	0	1223303..1223482	+	59	109150053	-	syc1112-da	-	hypothetical protein
1114	 56.00	0	1223484..1224008	+	174	56751122	-	syc1113_d	-	putative metalloprotease
1115	 59.26	0	1225149..1225634	+	161	56751123	dgkA	syc1114_d	-	diacylglycerol kinase
1116	 54.23	0	1225699..1226301	+	200	56751124	trpG	syc1115_d	-	anthranilate synthase component II
1117	 56.71	0	1226335..1227087	+	250	56751125	-	syc1116_d	-	hypothetical protein
1118	 52.72	0	1227432..1227890	-	152	56751126	-	syc1117_c	-	hypothetical protein
1119	 57.90	0	1227957..1229348	-	463	56751127	lim17	syc1118_c	-	putative neutral invertase
1120	 56.88	0	1229386..1230948	-	520	56751128	purH	syc1119_c	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1121	 56.44	0	1231262..1232386	-	374	56751129	-	syc1120_c	-	hypothetical protein
1122	 57.90	0	1232660..1233526	+	288	56751130	cdsA	syc1121_d	-	phosphatidate cytidylyltransferase
1123	 58.92	0	1233523..1234206	-	227	56751131	-	syc1122_c	-	hypothetical protein
1124	 61.26	+1	1234181..1235530	+	449	56751132	mltA	syc1123_d	-	membrane-bound lytic transglycosylase A
1125	 59.20	0	1235755..1237335	+	526	56751133	-	syc1124_d	-	hypothetical protein
1126	 58.51	0	1237426..1238577	+	383	56751134	chrA	syc1125_d	-	chromate transport protein
1127	 55.61	0	1238826..1240010	+	394	56751135	rfaG	syc1126_d	-	glycosyltransferase
1128	 57.99	0	1239979..1240485	-	168	56751136	-	syc1127_c	-	hypothetical protein
1129	 58.01	0	1240490..1241899	-	469	56751137	-	syc1128_c	-	hypothetical protein
1130	 56.84	0	1242186..1243559	+	457	56751138	chlP	syc1129_d	-	geranylgeranyl hydrogenase
1131	 54.33	0	1243730..1244353	+	207	56751139	-	syc1130_d	-	hypothetical protein
1132	 46.96	-2	1244429..1245118	+	229	56751140	-	syc1131_d	-	hypothetical protein
1133	 46.07	-2	1245158..1245424	+	88	56751141	-	syc1132_d	-	hypothetical protein
1134	 62.54	+1	1245534..1245848	+	104	56751142	-	syc1133_d	-	hypothetical protein
1135	 57.09	0	1246052..1247095	-	347	56751143	-	syc1134_c	-	hypothetical protein
1136	 55.21	0	1247117..1247500	-	127	56751144	-	syc1135_c	-	hypothetical protein
1137	 58.62	0	1247554..1248348	-	264	56751145	ycf63	syc1136_c	-	putative ABC transporter permease protein
1138	 59.00	0	1248674..1249012	+	112	56751146	-	syc1137_d	-	hypothetical protein
1139	 59.27	0	1249067..1250539	+	490	56751147	pqqE	syc1138_d	-	putative zinc protease protein
1140	 58.33	0	1250536..1251951	+	471	56751148	ymxG	syc1139_d	-	processing protease
1141	 49.45	-1	1252856..1253668	+	270	56751149	-	syc1140_d	-	hypothetical protein
1142	 49.44	-1	1254028..1254828	-	266	56751150	-	syc1141_c	-	hypothetical protein
1143	 53.33	0	1254866..1255765	-	299	56751151	metA	syc1142_c	-	homoserine O-succinyltransferase
1144	 56.32	0	1255814..1257118	-	434	56751152	metY	syc1143_c	-	O-acetylhomoserine (thiol)-lyase
1145	 58.14	0	1257280..1258734	-	484	56751153	-	syc1144_c	-	putative flavin-containing monoamine oxidase
1146	 58.80	0	1258837..1260171	-	444	56751154	xseA	syc1145_c	-	exodeoxyribonuclease VII large subunit
1147	 56.28	0	1260192..1261115	+	307	56751155	-	syc1146_d	-	sodium-dependent transporter
1148	 53.89	0	1261150..1263333	-	727	56751156	-	syc1147_c	-	putative sulfate transporter
1149	 51.90	-1	1263577..1264206	-	209	56751157	-	syc1148_c	-	two-component response regulator
1150	 55.07	0	1264466..1265017	-	183	56751158	-	syc1149_c	-	hypothetical protein
1151	 58.60	0	1265089..1265373	-	94	56751159	-	syc1150_c	-	hypothetical protein
1152	 56.83	0	1265399..1265998	-	199	56751160	-	syc1151_c	-	hypothetical protein
1153	 55.26	0	1266123..1266350	-	75	56751161	cp12	syc1152_c	-	hypothetical protein
1154	 59.06	0	1266583..1267779	+	398	56751162	-	syc1153_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.