IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
60	 60.83	+1	70243..71595	+	450	56750070	-	syc0061_d	-	hypothetical protein
61	 50.95	-1	71600..72178	-	192	56750071	-	syc0062_c	-	hypothetical protein
62	 45.99	-2	72421..72981	+	186	56750072	-	syc0063_d	-	hypothetical protein
63	 53.65	0	73113..74648	-	511	56750073	-	syc0064_c	-	porin; major outer membrane protein
64	 58.25	0	74889..76313	+	474	56750074	manC	syc0065_d	-	mannose-1-phosphate guanylyltransferase
65	 53.26	0	76425..79871	+	1148	56750075	-	syc0066_d	-	ribonucleoside triphosphate reductase B
66	 57.63	0	79947..81362	-	471	56750076	pntB	syc0067_c	-	pyridine nucleotide transhydrogenase beta subunit
67	 54.76	0	81359..81652	-	97	56750077	pntA	syc0068_c	-	NAD(P) transhydrogenase subunit alpha
68	 60.88	+1	81649..82875	-	408	56750078	pntA	syc0069_c	-	pyridine nucleotide transhydrogenase alpha subunit
69	 59.33	0	82988..83587	+	199	56750079	-	syc0070_d	-	hypothetical protein
70	 65.22	+2	83635..83772	+	45	56750080	rpmH	syc0071_d	-	50S ribosomal protein L34
71	 56.37	0	83778..84146	+	122	56750081	rnpA	syc0072_d	-	ribonuclease P
72	 58.14	0	84133..84519	+	128	56750082	-	syc0073_d	-	hypothetical protein
73	 56.32	0	84722..85900	+	392	56750083	yidC	syc0074_d	-	putative inner membrane protein translocase component YidC
74	 57.99	0	85897..86403	+	168	56750084	-	syc0075_d	-	hypothetical protein
75	 57.41	0	86406..86675	+	89	56750085	-	syc0076_d	-	hypothetical protein
76	 59.21	0	86686..86913	+	75	56750086	-	syc0077_d	-	hypothetical protein
77	 57.84	0	86910..88415	+	501	56750087	ycf46	syc0078_d	-	hypothetical protein
78	 55.58	0	88555..90123	-	522	56750088	-	syc0079_c	-	Fe-S oxidoreductase
79	 57.12	0	90692..93163	+	823	56750089	-	syc0080_d	-	proteinase
80	 56.71	0	93236..93928	+	230	56750090	-	syc0081_d	-	hypothetical protein
81	 56.21	0	93956..94615	-	219	161621824	ribC	syc0082_c	-	riboflavin synthase subunit alpha
82	 53.35	0	94669..95892	-	407	56750092	-	syc0083_c	-	glycosyltransferase
83	 57.56	0	96039..96521	-	160	56750093	-	syc0084_c	-	hypothetical protein
84	 54.68	0	96525..96866	-	113	56750094	-	syc0085_c	-	hypothetical protein
85	 59.83	0	96857..97822	-	321	56750095	-	syc0086_c	-	hypothetical protein
86	 49.44	-1	98222..98941	+	239	56750096	-	syc0087_d	-	hypothetical protein
87	 54.05	0	99041..99682	+	213	56750097	-	syc0088_d	-	hypothetical protein
88	 56.55	0	99903..100238	+	111	56750098	petJ	syc0089_d	-	cytochrome c6
89	 59.44	0	100239..101138	+	299	56750099	-	syc0090_d	-	CytB protein
90	 50.39	-1	101233..101742	+	169	56750100	-	syc0091_d	-	hypothetical protein
91	 49.79	-1	102339..103061	+	240	56750101	-	syc0092_d	-	hypothetical protein
92	 46.11	-2	103083..103622	-	179	56750102	-	syc0093_c	-	hypothetical protein
93	 54.36	0	103793..105433	-	546	56750103	-	syc0094_c	-	porin; major outer membrane protein
94	 56.49	0	105655..106725	+	356	56750104	-	syc0095_d	-	Iron-regulated protein A precursor
95	 58.39	0	107195..108088	+	297	56750105	-	syc0096_d	-	thiol oxidoreductase
96	 56.59	0	108219..108476	+	85	56750106	-	syc0097_d	-	hypothetical protein
97	 58.62	0	108585..109205	+	206	56750107	-	syc0098_d	-	hypothetical protein
98	 58.20	0	109269..109835	+	188	56750108	-	syc0099_d	-	hypothetical protein
99	 61.80	+1	109815..110492	-	225	56750109	plsC	syc0100_c	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
100	 57.71	0	110461..111342	-	293	56750110	-	syc0101_c	-	acyl-carrier-protein S-malonyltransferase
101	 57.14	0	111396..112403	-	335	56750111	fabH	syc0102_c	-	3-oxoacyl-(acyl carrier protein) synthase III
102	 59.46	0	112473..113513	-	346	161621823	plsX	syc0103_c	-	putative glycerol-3-phosphate acyltransferase PlsX
103	 57.99	0	113664..114320	-	218	56750113	-	syc0104_c	-	two-component response regulator for energy transfer from phycobilisomes to photosystems
104	 59.71	0	114603..116039	+	478	56750114	radA	syc0105_d	-	DNA repair protein RadA
105	 55.63	0	116036..116497	-	153	56750115	-	syc0106_c	-	hypothetical protein
106	 57.30	0	116540..117340	-	266	56750116	pstB	syc0107_c	-	phosphate transport system ATP-binding protein
107	 58.90	0	117405..118472	+	355	56750117	lpxD	syc0108_d	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
108	 57.11	0	118492..119454	-	320	56750118	nadA	syc0109_c	-	quinolinate synthetase
109	 56.53	0	119490..120308	-	272	56750119	icfA	syc0110_c	-	carbonic anhydrase
110	 50.62	-1	120395..120874	+	159	56750120	-	syc0111_d	-	hypothetical protein
111	 52.69	0	120980..122095	+	371	56750121	-	syc0112_d	-	hypothetical protein
112	 55.87	0	122508..123581	-	357	56750122	-	syc0113_c	-	fructose-1,6-bisphosphate aldolase
113	 55.86	0	123965..124399	-	144	56750123	-	syc0114_c	-	hypothetical protein
114	 59.41	0	124647..125624	+	325	56750124	cobD	syc0115_d	-	cobalamin biosynthesis protein
115	 61.02	+1	125705..126625	+	306	56750125	thrB	syc0116_d	-	homoserine kinase
116	 55.43	0	126768..128369	+	533	56750126	ndhD	syc0117_d	-	NAD(P)H-quinone oxidoreductase subunit 4
117	 55.96	0	128508..129002	+	164	56750127	pmgA	syc0118_d	-	photomixotrophic growth related protein PmgA-like protein
118	 59.42	0	129131..129268	+	45	56750128	pmgA	syc0119_d	-	photomixotrophic growth related protein PmgA
119	 58.06	0	129234..129512	-	92	109150054	-	syc0120-da	-	hypothetical protein
120	 55.48	0	129593..130039	+	148	56750129	-	syc0120_d	-	hypothetical protein
121	 58.32	0	130075..131823	+	582	56750130	menD	syc0121_d	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
122	 60.33	+1	131944..132543	+	199	56750131	-	syc0122_d	-	hypothetical protein
123	 58.07	0	132757..133815	-	352	56750132	argC	syc0123_c	-	N-acetyl-gamma-glutamyl-phosphate reductase
124	 56.47	0	134088..135773	+	561	56750133	ribA	syc0124_d	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
125	 57.31	0	135812..136249	-	145	56750134	rot	syc0125_c	-	peptidyl-prolyl cis-trans isomerase
126	 53.26	0	136626..137483	+	285	56750135	-	syc0126_d	-	hypothetical protein
127	 58.15	0	137532..137942	+	136	56750136	-	syc0127_d	-	hypothetical protein
128	 56.99	0	138205..139392	-	395	56750137	purK	syc0128_c	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
129	 53.87	0	139494..139829	-	111	56750138	rbcS	syc0129_c	-	ribulose bisphosphate carboxylase small subunit
130	 57.58	0	139920..141338	-	472	56750139	rbcL	syc0130_c	-	ribulose bisophosphate carboxylase
131	 56.32	0	141729..142559	-	276	56750140	ccmO	syc0131_c	-	carbon dioxide concentrating mechanism protein CcmO
132	 59.67	0	142601..143086	-	161	56750141	ccmN	syc0132_c	-	carbon dioxide concentrating mechanism protein
133	 57.84	0	143122..144741	-	539	56750142	ccmM	syc0133_c	-	carbon dioxide concentrating mechanism protein CcmM
134	 54.33	0	144807..145106	-	99	56750143	ccmL	syc0134_c	-	carbon dioxide concentrating mechanism protein CcmL
135	 56.31	0	145253..145561	-	102	56750144	ccmK	syc0135_c	-	putative carboxysome assembly protein
136	 54.68	0	145891..147291	-	466	56750145	chlN	syc0136_c	-	light-independent protochlorophyllide reductase subunit N
137	 48.55	-1	147355..148215	-	286	56750146	chlL	syc0137_c	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
138	 60.26	+1	148817..149800	-	327	56750147	-	syc0138_c	-	hypothetical protein
139	 57.13	0	149805..152456	-	883	56750148	topA	syc0139_c	-	DNA topoisomerase I
140	 54.66	0	152705..154270	+	521	56750149	ndhB	syc0140_d	-	NAD(P)H-quinone oxidoreductase subunit 2
141	 57.30	0	154366..155091	+	241	56750150	-	syc0141_d	-	ATP-binding protein of ABC transporter
142	 56.22	0	155104..155859	-	251	56750151	-	syc0142_c	-	hypothetical protein
143	 56.89	0	155983..156432	+	149	56750152	-	syc0143_d	-	hypothetical protein
144	 59.04	0	156442..157149	+	235	56750153	-	syc0144_d	-	hypothetical protein
145	 55.02	0	157229..158851	+	540	56750154	leuA	syc0145_d	-	2-isopropylmalate synthase
146	 56.79	0	158931..159953	-	340	56750155	-	syc0146_c	-	iron transport system substrate-binding protein
147	 41.67	-2	160245..160880	-	211	56750156	-	syc0147_c	-	membrane-associated protein
148	 56.56	0	161112..162743	-	543	56750157	futB	syc0148_c	-	iron(III) ABC transporter permease protein
149	 57.99	0	162891..163997	+	368	56750158	-	syc0149_d	-	iron(III)-transport ATP-binding protein
150	 59.09	0	164013..164540	-	175	56750159	-	syc0150_c	-	hypothetical protein
151	 58.84	0	164716..165405	+	229	56750160	-	syc0151_d	-	two-component response regulator
152	 57.89	0	165535..166206	+	223	56750161	-	syc0152_d	-	hydroxyacylglutathione hydrolase
153	 47.30	-2	166223..167482	-	419	56750162	-	syc0153_c	-	hypothetical protein
154	 53.44	0	167695..168072	+	125	56750163	-	syc0154_d	-	hypothetical protein
155	 53.83	0	168423..169544	+	373	56750164	-	syc0155_d	-	endo-1-beta-xylanase
156	 46.68	-2	169477..170712	+	411	56750165	-	syc0156_d	-	hypothetical protein
157	 42.96	-2	170730..172952	+	740	56750166	-	syc0157_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
158	 53.10	0	173280..174650	-	456	56750167	-	syc0158_c	-	hypothetical protein
159	 53.49	0	174799..175056	+	85	56750168	-	syc0159_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.