IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1016	 58.09	0	1129182..1130498	+	438	56751025	hemA	syc1016_d	-	glutamyl-tRNA reductase
1017	 55.99	0	1130498..1130806	+	102	56751026	-	syc1017_d	-	hypothetical protein
1018	 57.67	0	1130806..1131372	+	188	56751027	-	syc1018_d	-	hypothetical protein
1019	 59.75	0	1131397..1132047	+	216	56751028	-	syc1019_d	-	hypothetical protein
1020	 57.06	0	1132057..1132410	+	117	56751029	-	syc1020_d	-	hypothetical protein
1021	 57.08	0	1132453..1133505	+	350	56751030	-	syc1021_d	-	hypothetical protein
1022	 57.68	0	1133782..1136295	-	837	56751031	-	syc1022_c	-	mannose-1-phosphate guanyltransferase
1023	 54.24	0	1136376..1136552	+	58	56751032	-	syc1023_d	-	hypothetical protein
1024	 58.70	0	1136557..1137246	+	229	56751033	-	syc1024_d	-	hypothetical protein
1025	 56.59	0	1137354..1137899	+	181	56751034	-	syc1025_d	-	hypothetical protein
1026	 58.76	0	1137896..1138249	+	117	56751035	-	syc1026_d	-	hypothetical protein
1027	 55.69	0	1138429..1139958	-	509	56751036	-	syc1027_c	-	hypothetical protein
1028	 58.23	0	1140056..1141003	+	315	56751037	-	syc1028_d	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1029	 43.57	-2	1141440..1143500	-	686	56751038	-	syc1029_c	-	hypothetical protein
1030	 57.25	0	1143836..1145215	+	459	56751039	-	syc1030_d	-	aldehyde dehydrogenase
1031	 59.67	0	1145236..1146564	-	442	56751040	-	syc1031_c	-	dihydroorotase
1032	 55.20	0	1146708..1147370	+	220	56751041	lepB	syc1032_d	-	signal peptidase I
1033	 58.33	0	1147326..1148561	-	411	56751042	pyrC	syc1033_c	-	dihydroorotase
1034	 58.89	0	1148568..1149905	-	445	56751043	gpm	syc1034_c	-	phosphoglycerate mutase
1035	 59.60	0	1150006..1151448	+	480	56751044	-	syc1035_d	-	hypothetical protein
1036	 58.11	0	1151661..1152104	+	147	56751045	-	syc1036_d	-	hypothetical protein
1037	 55.88	0	1152107..1153876	+	589	56751046	-	syc1037_d	-	penicillin-binding protein
1038	 50.89	-1	1154052..1155002	-	316	56751047	-	syc1038_c	-	protease
1039	 58.07	0	1155246..1156979	-	577	56751048	-	syc1039_c	-	two-component hybrid sensor and regulator
1040	 56.69	0	1157032..1158945	+	637	56751049	-	syc1040_d	-	GTP-binding protein LepA
1041	 57.52	0	1158945..1159556	+	203	56751050	-	syc1041_d	-	signal peptidase I
1042	 49.00	-1	1159587..1159886	+	99	56751051	ycf19	syc1042_d	-	hypothetical protein
1043	 56.45	0	1159918..1160328	-	136	56751052	clpS	syc1043_c	-	ATP-dependent Clp protease adaptor
1044	 58.10	0	1160327..1160431	+	34	56751053	petN	syc1044_d	-	cytochrome b6-f complex subunit PetN
1045	 57.90	0	1160678..1161784	-	368	56751054	-	syc1045_c	-	xenobiotic reductase
1046	 52.89	0	1161862..1162086	-	74	56751055	-	syc1046_c	-	hypothetical protein
1047	 55.48	0	1162169..1162999	-	276	56751056	lacG	syc1047_c	-	permease protein of sugar ABC transporter
1048	 59.26	0	1163137..1163676	-	179	56751057	-	syc1048_c	-	hypothetical protein
1049	 57.47	0	1164217..1165815	+	532	56751058	pgm	syc1049_d	-	phosphoglyceromutase
1050	 57.92	0	1165836..1166075	+	79	56751059	secG	syc1050_d	-	preprotein translocase subunit SecG
1051	 60.55	+1	1166044..1166877	+	277	56751060	-	syc1051_d	-	hypothetical protein
1052	 58.67	0	1166794..1169043	-	749	56751061	-	syc1052_c	-	UDP-glucose-beta-D-glucan glucosyltransferase
1053	 55.37	0	1169133..1169858	+	241	56751062	-	syc1053_d	-	hypothetical protein
1054	 52.34	0	1170001..1170342	+	113	56751063	-	syc1054_d	-	hypothetical protein
1055	 55.96	0	1170355..1170924	+	189	56751064	-	syc1055_d	-	low molecular weight phosphotyrosine protein phosphatase
1056	 55.44	0	1170924..1171511	+	195	56751065	-	syc1056_d	-	hypothetical protein
1057	 57.76	0	1171568..1172005	+	145	56751066	-	syc1057_d	-	hypothetical protein
1058	 54.85	0	1172102..1172575	+	157	56751067	-	syc1058_d	-	putative acetyltransferase
1059	 55.95	0	1172715..1173824	+	369	56751068	-	syc1059_d	-	glutathione-dependent formaldehyde dehydrogenase
1060	 57.95	0	1173830..1174666	+	278	56751069	-	syc1060_d	-	putative esterase
1061	 46.76	-2	1174702..1175319	-	205	56751070	-	syc1061_c	-	hypothetical protein
1062	 53.62	0	1175535..1175672	-	45	56751071	psbK	syc1062_c	-	photosystem II reaction center protein K
1063	 57.74	0	1175726..1176946	-	406	56751072	tgt	syc1063_c	-	queuine tRNA-ribosyltransferase
1064	 58.73	0	1176909..1177664	+	251	56751073	cobS	syc1064_d	-	cobalamin synthase
1065	 56.72	0	1177645..1178871	-	408	56751074	-	syc1065_c	-	two-component sensor histidine kinase
1066	 51.60	-1	1179044..1179481	+	145	56751075	-	syc1066_d	-	hypothetical protein
1067	 60.00	0	1179581..1180210	-	209	56751076	-	syc1067_c	-	esterase
1068	 57.32	0	1180585..1180830	+	81	56751077	nifU	syc1068_d	-	putative NifU-like protein
1069	 58.04	0	1180919..1182205	+	428	161621818	serS	syc1069_d	-	seryl-tRNA synthetase
1070	 57.81	0	1182252..1183346	+	364	56751079	-	syc1070_d	-	hypothetical protein
1071	 57.35	0	1183343..1184029	+	228	56751080	nth	syc1071_d	-	DNA-(apurinic or apyrimidinic site) lyase
1072	 59.41	0	1184059..1184361	+	100	56751081	rpsN	syc1072_d	-	30S ribosomal protein S14
1073	 60.32	+1	1184442..1185497	+	351	56751082	oppC	syc1073_d	-	peptide transport system permease protein
1074	 59.36	0	1185840..1186523	+	227	56751083	-	syc1074_d	-	hypothetical protein
1075	 59.58	0	1186563..1187804	+	413	56751084	-	syc1075_d	-	hypothetical protein
1076	 54.81	0	1187929..1189446	-	505	56751085	amt1	syc1076_c	-	ammonium/methylammonium permease
1077	 58.89	0	1189689..1190357	-	222	56751086	purE	syc1077_c	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1078	 58.70	0	1190317..1191534	+	405	56751087	nagA	syc1078_d	-	N-acetylglucosamine-6-phosphate deacetylase
1079	 56.38	0	1191580..1192269	+	229	56751088	chlM	syc1079_d	-	Mg-protoporphyrin IX methyl transferase
1080	 40.92	-2	1192851..1193417	-	188	56751089	-	syc1080_c	-	putative glutathione peroxidase
1081	 54.25	0	1193730..1194035	-	101	56751090	-	syc1081_c	-	hypothetical protein
1082	 59.79	0	1194050..1194805	-	251	56751091	-	syc1082_c	-	hypothetical protein
1083	 54.66	0	1194816..1195823	-	335	56751092	-	syc1083_c	-	hypothetical protein
1084	 54.09	0	1196040..1197248	-	402	56751093	-	syc1084_c	-	hypothetical protein
1085	 56.37	0	1197635..1198333	-	232	56751094	-	syc1085_c	-	hypothetical protein
1086	 58.13	0	1198323..1199576	-	417	56751095	-	syc1086_c	-	hypothetical protein
1087	 57.30	0	1199588..1201498	-	636	56751096	dxs	syc1087_c	-	1-deoxy-D-xylulose-5-phosphate synthase
1088	 60.86	+1	1201597..1202199	+	200	56751097	-	syc1088_d	-	hypothetical protein
1089	 58.20	0	1202270..1203898	+	542	56751098	leuA	syc1089_d	-	alpha-isopropylmalate/homocitrate synthase family transferase
1090	 58.07	0	1203929..1204777	+	282	56751099	-	syc1090_d	-	ATP-binding protein of ABC transporter
1091	 56.52	0	1204794..1205345	+	183	56751100	-	syc1091_d	-	hypothetical protein
1092	 48.15	-1	1205439..1205816	+	125	56751101	-	syc1092_d	-	hypothetical protein
1093	 55.22	0	1205925..1207007	-	360	56751102	psbAI	syc1093_c	-	photosystem II D1 protein
1094	 54.79	0	1207266..1207484	+	72	56751103	-	syc1094_d	-	hypothetical protein
1095	 54.68	0	1207591..1208733	-	380	56751104	-	syc1095_c	-	hypothetical protein
1096	 56.47	0	1208931..1209332	+	133	56751105	-	syc1096_d	-	glutathione S-transferase
1097	 56.39	0	1209364..1210929	+	521	56751106	-	syc1097_d	-	hypothetical protein
1098	 59.81	0	1210977..1211939	+	320	56751107	bioB	syc1098_d	-	biotin synthetase
1099	 53.56	0	1212036..1212386	-	116	56751108	-	syc1099_c	-	hypothetical protein
1100	 55.60	0	1212521..1214029	-	502	56751109	-	syc1100_c	-	hypothetical protein
1101	 54.17	0	1214108..1214491	-	127	56751110	-	syc1101_c	-	hypothetical protein
1102	 58.28	0	1214735..1215712	+	325	56751111	-	syc1102_d	-	hypothetical protein
1103	 57.03	0	1215692..1216864	-	390	56751112	-	syc1103_c	-	hypothetical protein
1104	 56.00	0	1217304..1217528	+	74	56751113	ndhL	syc1104_d	-	NADH dehydrogenase subunit NdhL
1105	 57.88	0	1217529..1217858	+	109	56751114	-	syc1105_d	-	hypothetical protein
1106	 58.18	0	1217889..1218689	+	266	56751115	trpA	syc1106_d	-	tryptophan synthase subunit alpha
1107	 37.36	-2	1218858..1219130	+	90	56751116	-	syc1107_d	-	hypothetical protein
1108	 55.35	0	1219459..1220112	-	217	56751117	trpF	syc1108_c	-	N-(5'-phosphoribosyl)anthranilate isomerase
1109	 57.61	0	1220209..1220451	+	80	56751118	psaK	syc1109_d	-	photosystem I reaction center subunit X
1110	 54.98	0	1220526..1220927	-	133	56751119	-	syc1110_c	-	hypothetical protein
1111	 56.86	0	1221012..1222010	-	332	56751120	holA	syc1111_c	-	DNA polymerase III subunit delta
1112	 56.17	0	1222371..1223285	+	304	56751121	prfB	syc1112_d	-	peptide chain release factor 2
1113	 55.56	0	1223303..1223482	+	59	109150053	-	syc1112-da	-	hypothetical protein
1114	 56.00	0	1223484..1224008	+	174	56751122	-	syc1113_d	-	putative metalloprotease
1115	 59.26	0	1225149..1225634	+	161	56751123	dgkA	syc1114_d	-	diacylglycerol kinase
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.