IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
971	 58.59	0	1087844..1088227	-	127	56750980	-	syc0971_c	-	hypothetical protein
972	 54.86	0	1088236..1088997	-	253	56750981	-	syc0972_c	-	hypothetical protein
973	 59.52	0	1089098..1090258	+	386	56750982	-	syc0973_d	-	hypothetical protein
974	 48.43	-1	1090315..1090824	+	169	56750983	-	syc0974_d	-	hypothetical protein
975	 56.24	0	1090858..1093005	-	715	56750984	nhaS4	syc0975_c	-	Na+/H+ antiporter
976	 57.58	0	1093046..1093738	-	230	56750985	-	syc0976_c	-	hypothetical protein
977	 55.56	0	1093720..1093989	-	89	161621819	-	syc0977_c	-	YciI-like protein
978	 59.22	0	1094068..1094631	+	187	56750987	-	syc0978_d	-	hypothetical protein
979	 56.38	0	1094628..1095521	-	297	56750988	lipA	syc0979_c	-	lipoyl synthase
980	 50.22	-1	1095818..1096048	-	76	56750989	-	syc0980_c	-	hypothetical protein
981	 49.57	-1	1096052..1096513	-	153	56750990	-	syc0981_c	-	hypothetical protein
982	 56.00	0	1096527..1097276	-	249	56750991	-	syc0982_c	-	hypothetical protein
983	 58.69	0	1097372..1099378	-	668	56750992	tktA	syc0983_c	-	transketolase
984	 58.37	0	1099525..1100778	-	417	56750993	fabF	syc0984_c	-	3-oxoacyl-(acyl carrier protein) synthase II
985	 52.67	0	1100846..1101088	-	80	56750994	acpP	syc0985_c	-	acyl carrier protein
986	 57.32	0	1101547..1101792	+	81	56750995	psaC	syc0986_d	-	photosystem I subunit VII
987	 55.82	0	1101939..1103864	+	641	56750996	glmS	syc0987_d	-	D-fructose-6-phosphate amidotransferase
988	 44.30	-2	1103880..1104116	+	78	56750997	-	syc0988_d	-	hypothetical protein
989	 38.98	-2	1104113..1104466	+	117	56750998	-	syc0989_d	-	hypothetical protein
990	 53.24	0	1104704..1105567	-	287	56750999	-	syc0990_c	-	hypothetical protein
991	 58.91	0	1105592..1106545	-	317	56751000	-	syc0991_c	-	hypothetical protein
992	 57.54	0	1106549..1107337	-	262	56751001	devB	syc0992_c	-	6-phosphogluconolactonase
993	 55.51	0	1107538..1108290	+	250	56751002	-	syc0993_d	-	hypothetical protein
994	 50.90	-1	1108645..1109481	+	278	56751003	-	syc0994_d	-	hypothetical protein
995	 52.51	0	1109586..1110482	-	298	56751004	lacF	syc0995_c	-	permease protein of sugar ABC transporter
996	 57.00	0	1110547..1111653	+	368	56751005	aroB	syc0996_d	-	3-dehydroquinate synthase
997	 52.03	0	1111717..1112085	+	122	56751006	-	syc0997_d	-	hypothetical protein
998	 56.92	0	1112177..1112566	+	129	56751007	-	syc0998_d	-	hypothetical protein
999	 55.44	0	1113458..1114045	-	195	56751008	-	syc0999_c	-	hypothetical protein
1000	 57.94	0	1114051..1114692	-	213	56751009	-	syc1000_c	-	hypothetical protein
1001	 59.26	0	1114742..1115281	-	179	56751010	-	syc1001_c	-	hypothetical protein
1002	 54.12	0	1115324..1116487	-	387	56751011	-	syc1002_c	-	hypothetical protein
1003	 60.27	+1	1116547..1118874	+	775	56751012	recJ	syc1003_d	-	single-stranded DNA-specific exonuclease
1004	 58.58	0	1118996..1120318	+	440	56751013	ctpB	syc1004_d	-	carboxyl-terminal protease
1005	 58.39	0	1120315..1120737	+	140	56751014	-	syc1005_d	-	hypothetical protein
1006	 55.33	0	1120757..1121197	+	146	56751015	-	syc1006_d	-	hypothetical protein
1007	 57.20	0	1121251..1121979	+	242	56751016	-	syc1007_d	-	ATP-binding protein of ABC transporter
1008	 55.02	0	1122072..1123256	+	394	56751017	ycf84	syc1008_d	-	hypothetical protein
1009	 59.41	0	1123301..1124278	+	325	56751018	ccsA	syc1009_d	-	c-type cytochrome synthesis protein
1010	 57.76	0	1124300..1124950	+	216	56751019	-	syc1010_d	-	hydrolase, haloacid dehalogenase-like
1011	 59.07	0	1124947..1125420	-	157	56751020	-	syc1011_c	-	hypothetical protein
1012	 60.83	+1	1125459..1126589	-	376	56751021	-	syc1012_c	-	hypothetical protein
1013	 52.09	0	1126596..1127144	-	182	56751022	frr	syc1013_c	-	ribosome recycling factor
1014	 56.30	0	1127131..1127892	-	253	56751023	pyrH	syc1014_c	-	uridylate kinase
1015	 58.57	0	1128013..1129050	+	345	56751024	glpX	syc1015_d	-	fructose 1,6-bisphosphatase II
1016	 58.09	0	1129182..1130498	+	438	56751025	hemA	syc1016_d	-	glutamyl-tRNA reductase
1017	 55.99	0	1130498..1130806	+	102	56751026	-	syc1017_d	-	hypothetical protein
1018	 57.67	0	1130806..1131372	+	188	56751027	-	syc1018_d	-	hypothetical protein
1019	 59.75	0	1131397..1132047	+	216	56751028	-	syc1019_d	-	hypothetical protein
1020	 57.06	0	1132057..1132410	+	117	56751029	-	syc1020_d	-	hypothetical protein
1021	 57.08	0	1132453..1133505	+	350	56751030	-	syc1021_d	-	hypothetical protein
1022	 57.68	0	1133782..1136295	-	837	56751031	-	syc1022_c	-	mannose-1-phosphate guanyltransferase
1023	 54.24	0	1136376..1136552	+	58	56751032	-	syc1023_d	-	hypothetical protein
1024	 58.70	0	1136557..1137246	+	229	56751033	-	syc1024_d	-	hypothetical protein
1025	 56.59	0	1137354..1137899	+	181	56751034	-	syc1025_d	-	hypothetical protein
1026	 58.76	0	1137896..1138249	+	117	56751035	-	syc1026_d	-	hypothetical protein
1027	 55.69	0	1138429..1139958	-	509	56751036	-	syc1027_c	-	hypothetical protein
1028	 58.23	0	1140056..1141003	+	315	56751037	-	syc1028_d	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1029	 43.57	-2	1141440..1143500	-	686	56751038	-	syc1029_c	-	hypothetical protein
1030	 57.25	0	1143836..1145215	+	459	56751039	-	syc1030_d	-	aldehyde dehydrogenase
1031	 59.67	0	1145236..1146564	-	442	56751040	-	syc1031_c	-	dihydroorotase
1032	 55.20	0	1146708..1147370	+	220	56751041	lepB	syc1032_d	-	signal peptidase I
1033	 58.33	0	1147326..1148561	-	411	56751042	pyrC	syc1033_c	-	dihydroorotase
1034	 58.89	0	1148568..1149905	-	445	56751043	gpm	syc1034_c	-	phosphoglycerate mutase
1035	 59.60	0	1150006..1151448	+	480	56751044	-	syc1035_d	-	hypothetical protein
1036	 58.11	0	1151661..1152104	+	147	56751045	-	syc1036_d	-	hypothetical protein
1037	 55.88	0	1152107..1153876	+	589	56751046	-	syc1037_d	-	penicillin-binding protein
1038	 50.89	-1	1154052..1155002	-	316	56751047	-	syc1038_c	-	protease
1039	 58.07	0	1155246..1156979	-	577	56751048	-	syc1039_c	-	two-component hybrid sensor and regulator
1040	 56.69	0	1157032..1158945	+	637	56751049	-	syc1040_d	-	GTP-binding protein LepA
1041	 57.52	0	1158945..1159556	+	203	56751050	-	syc1041_d	-	signal peptidase I
1042	 49.00	-1	1159587..1159886	+	99	56751051	ycf19	syc1042_d	-	hypothetical protein
1043	 56.45	0	1159918..1160328	-	136	56751052	clpS	syc1043_c	-	ATP-dependent Clp protease adaptor
1044	 58.10	0	1160327..1160431	+	34	56751053	petN	syc1044_d	-	cytochrome b6-f complex subunit PetN
1045	 57.90	0	1160678..1161784	-	368	56751054	-	syc1045_c	-	xenobiotic reductase
1046	 52.89	0	1161862..1162086	-	74	56751055	-	syc1046_c	-	hypothetical protein
1047	 55.48	0	1162169..1162999	-	276	56751056	lacG	syc1047_c	-	permease protein of sugar ABC transporter
1048	 59.26	0	1163137..1163676	-	179	56751057	-	syc1048_c	-	hypothetical protein
1049	 57.47	0	1164217..1165815	+	532	56751058	pgm	syc1049_d	-	phosphoglyceromutase
1050	 57.92	0	1165836..1166075	+	79	56751059	secG	syc1050_d	-	preprotein translocase subunit SecG
1051	 60.55	+1	1166044..1166877	+	277	56751060	-	syc1051_d	-	hypothetical protein
1052	 58.67	0	1166794..1169043	-	749	56751061	-	syc1052_c	-	UDP-glucose-beta-D-glucan glucosyltransferase
1053	 55.37	0	1169133..1169858	+	241	56751062	-	syc1053_d	-	hypothetical protein
1054	 52.34	0	1170001..1170342	+	113	56751063	-	syc1054_d	-	hypothetical protein
1055	 55.96	0	1170355..1170924	+	189	56751064	-	syc1055_d	-	low molecular weight phosphotyrosine protein phosphatase
1056	 55.44	0	1170924..1171511	+	195	56751065	-	syc1056_d	-	hypothetical protein
1057	 57.76	0	1171568..1172005	+	145	56751066	-	syc1057_d	-	hypothetical protein
1058	 54.85	0	1172102..1172575	+	157	56751067	-	syc1058_d	-	putative acetyltransferase
1059	 55.95	0	1172715..1173824	+	369	56751068	-	syc1059_d	-	glutathione-dependent formaldehyde dehydrogenase
1060	 57.95	0	1173830..1174666	+	278	56751069	-	syc1060_d	-	putative esterase
1061	 46.76	-2	1174702..1175319	-	205	56751070	-	syc1061_c	-	hypothetical protein
1062	 53.62	0	1175535..1175672	-	45	56751071	psbK	syc1062_c	-	photosystem II reaction center protein K
1063	 57.74	0	1175726..1176946	-	406	56751072	tgt	syc1063_c	-	queuine tRNA-ribosyltransferase
1064	 58.73	0	1176909..1177664	+	251	56751073	cobS	syc1064_d	-	cobalamin synthase
1065	 56.72	0	1177645..1178871	-	408	56751074	-	syc1065_c	-	two-component sensor histidine kinase
1066	 51.60	-1	1179044..1179481	+	145	56751075	-	syc1066_d	-	hypothetical protein
1067	 60.00	0	1179581..1180210	-	209	56751076	-	syc1067_c	-	esterase
1068	 57.32	0	1180585..1180830	+	81	56751077	nifU	syc1068_d	-	putative NifU-like protein
1069	 58.04	0	1180919..1182205	+	428	161621818	serS	syc1069_d	-	seryl-tRNA synthetase
1070	 57.81	0	1182252..1183346	+	364	56751079	-	syc1070_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.