IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
924	 37.96	+1	965616..966911	+	431	78777126	-	Suden_0928	-	calcium-binding EF-hand
925	 36.94	0	966916..969132	+	738	78777127	-	Suden_0929	-	adenylate/guanylate cyclase
926	 34.76	0	969134..971524	+	796	78777128	-	Suden_0930	-	metal dependent phosphohydrolase
927	 34.08	0	971671..971937	+	88	78777129	-	Suden_0931	-	hypothetical protein
928	 33.07	0	971942..973486	+	514	78777130	-	Suden_0932	-	hypothetical protein
929	 32.91	0	973559..974983	+	474	78777131	-	Suden_0933	-	phytoene dehydrogenase and related proteins-like
930	 32.15	0	974976..975986	+	336	78777132	-	Suden_0934	-	histidine kinase internal region
931	 34.19	0	975967..976665	+	232	78777133	-	Suden_0935	-	LytR/AlgR family transcriptional regulator
932	 33.12	0	977061..977537	+	158	78777134	-	Suden_0936	-	hypothetical protein
933	 31.85	0	977588..977857	+	89	78777135	-	Suden_0937	-	hypothetical protein
934	 33.08	0	977850..979031	+	393	78777136	-	Suden_0938	-	Phage integrase
935	 29.10	-1	979298..980881	+	527	78777137	-	Suden_0939	-	HipA-like-like
936	 34.70	0	980976..981194	+	72	78777138	-	Suden_0940	-	hypothetical protein
937	 30.61	-1	981311..981898	+	195	78777139	-	Suden_0941	-	restriction modification system DNA specificity subunit
938	 34.68	0	981903..983390	+	495	78777140	-	Suden_0942	-	Type I restriction-modification system M subunit
939	 35.34	0	983392..984237	+	281	78777141	dinD	Suden_0943	-	DNA-damage-inducible protein D
940	 31.43	0	984234..985496	+	420	78777142	-	Suden_0944	-	restriction modification system DNA specificity subunit
941	 25.39	-2	985493..986764	+	423	78777143	-	Suden_0945	-	hypothetical protein
942	 24.18	-2	986764..987309	+	181	78777144	-	Suden_0946	-	hypothetical protein
943	 34.68	0	987320..988660	+	446	78777145	-	Suden_0947	-	putative transcriptional regulator
944	 32.20	0	988657..991749	+	1030	78777146	-	Suden_0948	-	Type I site-specific deoxyribonuclease HsdR
945	 26.67	-2	991742..992401	+	219	78777147	-	Suden_0949	-	hypothetical protein
946	 32.06	0	992721..993662	-	313	78777148	-	Suden_0950	-	hypothetical protein
947	 33.21	0	994232..995038	+	268	78777149	-	Suden_0951	-	Beta-lactamase
948	 27.87	-2	995033..995380	-	115	78777150	-	Suden_0952	-	hypothetical protein
949	 30.39	-1	995381..995788	-	135	78777151	-	Suden_0953	-	hypothetical protein
950	 30.46	-1	995781..996302	-	173	78777152	-	Suden_0954	-	hypothetical protein
951	 27.90	-2	996583..997281	-	232	78777153	-	Suden_0955	-	XRE family transcriptional regulator
952	 31.42	0	997425..998102	+	225	78777154	-	Suden_0956	-	hypothetical protein
953	 31.21	0	998114..999523	+	469	78777155	-	Suden_0957	-	DnaB-like helicase-like
954	 31.40	0	999596..999958	+	120	78777156	-	Suden_0958	-	hypothetical protein
955	 31.98	0	999955..1001133	+	392	78777157	-	Suden_0959	-	Phage integrase
956	 35.70	0	1001167..1001547	+	126	78777158	-	Suden_0960	-	4-hydroxybenzoyl-CoA thioesterase
957	 31.37	0	1001544..1002764	-	406	78777159	-	Suden_0961	-	hypothetical protein
958	 32.01	0	1002921..1004657	+	578	78777160	-	Suden_0962	-	Na+/Pi-cotransporter
959	 30.30	-1	1004716..1005375	-	219	78777161	-	Suden_0963	-	uracil-DNA glycosylase superfamily protein
960	 30.63	-1	1005476..1006252	+	258	78777162	-	Suden_0964	-	two component transcriptional regulator
961	 33.56	0	1006354..1008585	+	743	78777163	-	Suden_0965	-	Cache sensor signal transduction histidine kinase
962	 31.78	0	1008578..1010248	+	556	78777164	-	Suden_0966	-	multi-sensor signal transduction histidine kinase
963	 34.69	0	1010370..1013384	+	1004	78777165	-	Suden_0967	-	diguanylate cyclase/phosphodiesterase
964	 30.40	-1	1013544..1014497	+	317	78777166	-	Suden_0968	-	response regulator receiver domain-containing protein
965	 30.29	-1	1014508..1015494	+	328	78777167	-	Suden_0969	-	response regulator receiver domain-containing protein
966	 32.82	0	1015533..1015919	+	128	78777168	-	Suden_0970	-	response regulator receiver domain-containing protein
967	 33.33	0	1015921..1016430	+	169	78777169	-	Suden_0971	-	CheW protein
968	 37.00	0	1016447..1018054	+	535	78777170	-	Suden_0972	-	methyl-accepting chemotaxis sensory transducer
969	 32.58	0	1018057..1018320	+	87	78777171	-	Suden_0973	-	hypothetical protein
970	 36.22	0	1018324..1020399	+	691	78777172	-	Suden_0974	-	CheA signal transduction histidine kinases
971	 34.52	0	1020396..1021241	+	281	78777173	-	Suden_0975	-	MCP methyltransferase, CheR-type
972	 35.48	0	1021254..1022138	+	294	78777174	-	Suden_0976	-	histidine kinase
973	 40.98	+1	1022141..1022611	+	156	78777175	-	Suden_0977	-	CheD, stimulates methylation of MCP proteins
974	 40.60	+1	1022622..1023680	+	352	78777176	-	Suden_0978	-	response regulator receiver (CheY-like) modulated CheB methylesterase
975	 31.78	0	1023686..1025749	+	687	78777177	-	Suden_0979	-	histidine kinase
976	 35.68	0	1025845..1026441	+	198	78777178	-	Suden_0980	-	hypothetical protein
977	 33.39	0	1026451..1028358	+	635	78777179	-	Suden_0981	-	methyl-accepting chemotaxis sensory transducer
978	 29.81	-1	1028351..1029484	+	377	78777180	-	Suden_0982	-	response regulator receiver sensor signal transduction histidine kinase
979	 35.00	0	1029555..1031717	+	720	78777181	-	Suden_0983	-	methyl-accepting chemotaxis sensory transducer
980	 33.04	0	1031730..1033424	+	564	78777182	-	Suden_0984	-	response regulator receiver/GGDEF/EAL domain-containing protein
981	 30.80	-1	1033438..1034622	+	394	78777183	-	Suden_0985	-	histidine kinase
982	 32.79	0	1034626..1036089	+	487	78777184	-	Suden_0986	-	multi-sensor signal transduction histidine kinase
983	 29.85	-1	1036103..1037365	+	420	78777185	-	Suden_0987	-	response regulator receiver domain-containing protein
984	 35.12	0	1037393..1039351	-	652	78777186	-	Suden_0988	-	methyl-accepting chemotaxis sensory transducer
985	 34.35	0	1039923..1042085	+	720	78777187	-	Suden_0989	-	methyl-accepting chemotaxis sensory transducer
986	 36.95	0	1042136..1042522	-	128	78777188	-	Suden_0990	-	hypothetical protein
987	 35.86	0	1042691..1044712	+	673	78777189	glyS	Suden_0991	-	glycyl-tRNA synthetase subunit beta
988	 33.20	0	1044718..1045452	-	244	78777190	-	Suden_0992	-	hypothetical protein
989	 31.60	0	1045528..1045989	-	153	78777191	-	Suden_0993	-	globin
990	 32.21	0	1046036..1046746	-	236	78777192	-	Suden_0994	-	pseudouridylate synthase
991	 31.96	0	1046747..1047766	-	339	78777193	-	Suden_0995	-	permease YjgP/YjgQ
992	 36.03	0	1047766..1048581	-	271	78777194	-	Suden_0996	-	peptidase A24A-like
993	 36.58	0	1048581..1049258	-	225	78777195	-	Suden_0997	-	di-trans-poly-cis-decaprenylcistransferase
994	 36.25	0	1049255..1050523	-	422	78777196	-	Suden_0998	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
995	 34.51	0	1050690..1051796	+	368	78777197	-	Suden_0999	-	hypothetical protein
996	 37.80	+1	1051804..1052094	-	96	78777198	-	Suden_1000	-	Zinc finger, CDGSH-type
997	 33.33	0	1052195..1052749	+	184	78777199	-	Suden_1001	-	hypothetical protein
998	 35.88	0	1052933..1053364	+	143	78777200	-	Suden_1002	-	MotA/TolQ/ExbB proton channel
999	 31.75	0	1053342..1053719	+	125	78777201	-	Suden_1003	-	biopolymer transport protein ExbD/TolR
1000	 36.25	0	1053854..1054573	+	239	78777202	-	Suden_1004	-	TonB-like
1001	 38.81	+1	1054732..1056831	+	699	78777203	-	Suden_1005	-	TonB-dependent receptor
1002	 36.69	0	1056955..1058235	+	426	78777204	-	Suden_1006	-	TonB-dependent receptor
1003	 38.26	+1	1058560..1060263	-	567	78777205	-	Suden_1007	-	hemolysin activation/secretion protein-like
1004	 39.51	+1	1060275..1063316	-	1013	78777206	-	Suden_1008	-	GLUG
1005	 40.65	+1	1063306..1063674	-	122	78777207	-	Suden_1009	-	hypothetical protein
1006	 34.72	0	1063760..1065640	-	626	78777208	-	Suden_1010	-	signal transduction histidine kinase
1007	 33.33	0	1065640..1065948	-	102	78777209	-	Suden_1011	-	response regulator receiver domain-containing protein
1008	 33.64	0	1065960..1066289	-	109	78777210	-	Suden_1012	-	response regulator receiver domain-containing protein
1009	 30.93	-1	1066828..1067160	-	110	78777211	-	Suden_1013	-	hypothetical protein
1010	 35.33	0	1067454..1068758	-	434	78777212	-	Suden_1014	-	UDP-N-acetylglucosamine diphosphorylase
1011	 36.99	0	1068900..1069664	+	254	78777213	-	Suden_1015	-	MotA/TolQ/ExbB proton channel
1012	 39.42	+1	1069733..1070455	+	240	78777214	-	Suden_1016	-	OmpA/MotB
1013	 33.87	0	1070455..1071195	+	246	78777215	fliP	Suden_1017	-	flagellar biosynthesis protein FliP
1014	 33.96	0	1071210..1072319	+	369	78777216	-	Suden_1018	-	tRNA (uracil-5-)-methyltransferase
1015	 30.85	-1	1072367..1073773	+	468	78777217	-	Suden_1019	-	TrkA-C
1016	 38.00	+1	1073850..1074899	+	349	78777218	aroB	Suden_1020	-	3-dehydroquinate synthase
1017	 31.39	0	1074900..1076546	+	548	78777219	-	Suden_1021	-	MscS mechanosensitive ion channel
1018	 36.78	0	1076547..1077794	+	415	78777220	-	Suden_1022	-	MiaB-like tRNA modifying enzyme
1019	 34.37	0	1077781..1079424	+	547	78777221	-	Suden_1023	-	peptidase M41
1020	 29.50	-1	1079411..1079932	+	173	78777222	-	Suden_1024	-	hypothetical protein
1021	 36.91	0	1079942..1080472	+	176	78777223	mogA	Suden_1025	-	molybdenum cofactor biosynthesis protein
1022	 32.68	0	1080529..1081749	-	406	78777224	-	Suden_1026	-	periplasmic copper-binding
1023	 39.88	+1	1081947..1082450	-	167	78777225	-	Suden_1027	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.