IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
872	 34.04	0	905022..906710	-	562	78777074	-	Suden_0876	-	AcrB/AcrD/AcrF family cation efflux protein
873	 35.10	0	906710..908296	-	528	78777075	-	Suden_0877	-	AcrB/AcrD/AcrF family protein
874	 34.34	0	908303..909094	-	263	78777076	-	Suden_0878	-	secretion protein HlyD
875	 34.09	0	909091..910542	-	483	78777077	-	Suden_0879	-	Outer membrane efflux protein
876	 33.82	0	910730..911143	+	137	78777078	-	Suden_0880	-	hypothetical protein
877	 30.28	-1	911153..912331	+	392	78777079	-	Suden_0881	-	hypothetical protein
878	 33.33	0	912328..913290	+	320	78777080	-	Suden_0882	-	cation efflux system protein
879	 34.58	0	913295..916342	+	1015	78777081	-	Suden_0883	-	heavy metal efflux pump CzcA
880	 31.66	0	916355..917011	+	218	78777082	-	Suden_0884	-	two component transcriptional regulator
881	 31.22	0	917139..918134	+	331	78777083	-	Suden_0885	-	histidine kinase
882	 30.56	-1	918170..919141	-	323	78777084	-	Suden_0886	-	metal dependent phosphohydrolase
883	 29.28	-1	919230..919550	+	106	78777085	-	Suden_0887	-	hypothetical protein
884	 33.98	0	919550..920167	+	205	78777086	-	Suden_0888	-	pantothenate kinase
885	 37.30	0	920161..920790	+	209	78777087	hisG	Suden_0889	-	ATP phosphoribosyltransferase catalytic subunit
886	 35.09	0	920787..921470	+	227	78777088	-	Suden_0890	-	hypothetical protein
887	 31.36	0	921474..922589	-	371	78777089	-	Suden_0891	-	response regulator receiver sensor signal transduction histidine kinase
888	 32.25	0	922668..923312	+	214	78777090	-	Suden_0892	-	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
889	 33.17	0	923366..923995	+	209	78777091	-	Suden_0893	-	hypothetical protein
890	 35.24	0	924078..925127	+	349	78777092	-	Suden_0894	-	NAD-dependent epimerase/dehydratase
891	 36.47	0	925139..926062	-	307	78777093	pdxA	Suden_0895	-	4-hydroxythreonine-4-phosphate dehydrogenase
892	 41.00	+1	926059..926841	-	260	78777094	-	Suden_0896	-	pyridoxal phosphate biosynthetic protein PdxJ
893	 35.66	0	926974..928908	-	644	78777095	-	Suden_0897	-	hypothetical protein
894	 37.18	0	929082..930851	+	589	78777096	-	Suden_0898	-	protein-disulfide reductase
895	 35.79	0	931158..933437	+	759	78777097	-	Suden_0899	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
896	 35.59	0	933484..934236	-	250	78777098	-	Suden_0900	-	Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
897	 34.32	0	934236..935144	-	302	78777099	-	Suden_0901	-	oxidoreductase-like
898	 36.26	0	935148..936239	-	363	78777100	-	Suden_0902	-	DegT/DnrJ/EryC1/StrS aminotransferase
899	 33.81	0	936270..937316	-	348	78777101	lpxB	Suden_0903	-	lipid-A-disaccharide synthase
900	 34.99	0	937313..937675	-	120	78777102	-	Suden_0904	-	cytochrome c, class I
901	 36.58	0	937744..938943	+	399	78777103	-	Suden_0905	-	dihydroorotase
902	 27.85	-2	938980..939216	+	78	78777104	-	Suden_0906	-	hypothetical protein
903	 38.78	+1	939234..940352	-	372	78777105	tgt	Suden_0907	-	queuine tRNA-ribosyltransferase
904	 36.68	0	940681..941247	+	188	78777106	-	Suden_0908	-	elongation factor P
905	 31.84	0	941386..943932	+	848	78777107	-	Suden_0909	-	diguanylate cyclase/phosphodiesterase
906	 37.57	0	943988..947548	+	1186	78777108	dnaE	Suden_0910	-	DNA polymerase III subunit alpha
907	 32.37	0	947558..947869	+	103	78777109	-	Suden_0911	-	hypothetical protein
908	 39.87	+1	947869..948174	+	101	78777110	-	Suden_0912	-	hypothetical protein
909	 39.44	+1	948199..949458	+	419	78777111	-	Suden_0913	-	putative aminopeptidase 2
910	 34.65	0	949458..950441	+	327	78777112	-	Suden_0914	-	histidine kinase
911	 35.42	0	950497..950784	+	95	78777113	-	Suden_0915	-	hypothetical protein
912	 35.25	0	950861..953986	+	1041	78777114	-	Suden_0916	-	cytochrome c assembly protein
913	 36.75	0	953998..954699	+	233	78777115	-	Suden_0917	-	hypothetical protein
914	 34.28	0	954702..955652	+	316	78777116	hemH	Suden_0918	-	ferrochelatase
915	 35.08	0	955661..956290	+	209	78777117	-	Suden_0919	-	HAD family hydrolase
916	 33.57	0	956335..957579	+	414	78777118	-	Suden_0920	-	hypothetical protein
917	 31.79	0	957568..957957	-	129	78777119	-	Suden_0921	-	hypothetical protein
918	 33.77	0	958014..958925	+	303	78777120	-	Suden_0922	-	cation efflux protein
919	 36.55	0	959017..959763	+	248	78777121	-	Suden_0923	-	molybdenum ABC transporter periplasmic-binding protein
920	 32.59	0	959760..960164	+	134	78777122	-	Suden_0924	-	hypothetical protein
921	 36.42	0	960184..960864	+	226	78777123	-	Suden_0925	-	molybdate ABC transporter permease
922	 33.33	0	960861..961733	+	290	78777124	-	Suden_0926	-	ABC transporter-related protein
923	 37.18	0	961873..965619	+	1248	78777125	-	Suden_0927	-	hypothetical protein
924	 37.96	+1	965616..966911	+	431	78777126	-	Suden_0928	-	calcium-binding EF-hand
925	 36.94	0	966916..969132	+	738	78777127	-	Suden_0929	-	adenylate/guanylate cyclase
926	 34.76	0	969134..971524	+	796	78777128	-	Suden_0930	-	metal dependent phosphohydrolase
927	 34.08	0	971671..971937	+	88	78777129	-	Suden_0931	-	hypothetical protein
928	 33.07	0	971942..973486	+	514	78777130	-	Suden_0932	-	hypothetical protein
929	 32.91	0	973559..974983	+	474	78777131	-	Suden_0933	-	phytoene dehydrogenase and related proteins-like
930	 32.15	0	974976..975986	+	336	78777132	-	Suden_0934	-	histidine kinase internal region
931	 34.19	0	975967..976665	+	232	78777133	-	Suden_0935	-	LytR/AlgR family transcriptional regulator
932	 33.12	0	977061..977537	+	158	78777134	-	Suden_0936	-	hypothetical protein
933	 31.85	0	977588..977857	+	89	78777135	-	Suden_0937	-	hypothetical protein
934	 33.08	0	977850..979031	+	393	78777136	-	Suden_0938	-	Phage integrase
935	 29.10	-1	979298..980881	+	527	78777137	-	Suden_0939	-	HipA-like-like
936	 34.70	0	980976..981194	+	72	78777138	-	Suden_0940	-	hypothetical protein
937	 30.61	-1	981311..981898	+	195	78777139	-	Suden_0941	-	restriction modification system DNA specificity subunit
938	 34.68	0	981903..983390	+	495	78777140	-	Suden_0942	-	Type I restriction-modification system M subunit
939	 35.34	0	983392..984237	+	281	78777141	dinD	Suden_0943	-	DNA-damage-inducible protein D
940	 31.43	0	984234..985496	+	420	78777142	-	Suden_0944	-	restriction modification system DNA specificity subunit
941	 25.39	-2	985493..986764	+	423	78777143	-	Suden_0945	-	hypothetical protein
942	 24.18	-2	986764..987309	+	181	78777144	-	Suden_0946	-	hypothetical protein
943	 34.68	0	987320..988660	+	446	78777145	-	Suden_0947	-	putative transcriptional regulator
944	 32.20	0	988657..991749	+	1030	78777146	-	Suden_0948	-	Type I site-specific deoxyribonuclease HsdR
945	 26.67	-2	991742..992401	+	219	78777147	-	Suden_0949	-	hypothetical protein
946	 32.06	0	992721..993662	-	313	78777148	-	Suden_0950	-	hypothetical protein
947	 33.21	0	994232..995038	+	268	78777149	-	Suden_0951	-	Beta-lactamase
948	 27.87	-2	995033..995380	-	115	78777150	-	Suden_0952	-	hypothetical protein
949	 30.39	-1	995381..995788	-	135	78777151	-	Suden_0953	-	hypothetical protein
950	 30.46	-1	995781..996302	-	173	78777152	-	Suden_0954	-	hypothetical protein
951	 27.90	-2	996583..997281	-	232	78777153	-	Suden_0955	-	XRE family transcriptional regulator
952	 31.42	0	997425..998102	+	225	78777154	-	Suden_0956	-	hypothetical protein
953	 31.21	0	998114..999523	+	469	78777155	-	Suden_0957	-	DnaB-like helicase-like
954	 31.40	0	999596..999958	+	120	78777156	-	Suden_0958	-	hypothetical protein
955	 31.98	0	999955..1001133	+	392	78777157	-	Suden_0959	-	Phage integrase
956	 35.70	0	1001167..1001547	+	126	78777158	-	Suden_0960	-	4-hydroxybenzoyl-CoA thioesterase
957	 31.37	0	1001544..1002764	-	406	78777159	-	Suden_0961	-	hypothetical protein
958	 32.01	0	1002921..1004657	+	578	78777160	-	Suden_0962	-	Na+/Pi-cotransporter
959	 30.30	-1	1004716..1005375	-	219	78777161	-	Suden_0963	-	uracil-DNA glycosylase superfamily protein
960	 30.63	-1	1005476..1006252	+	258	78777162	-	Suden_0964	-	two component transcriptional regulator
961	 33.56	0	1006354..1008585	+	743	78777163	-	Suden_0965	-	Cache sensor signal transduction histidine kinase
962	 31.78	0	1008578..1010248	+	556	78777164	-	Suden_0966	-	multi-sensor signal transduction histidine kinase
963	 34.69	0	1010370..1013384	+	1004	78777165	-	Suden_0967	-	diguanylate cyclase/phosphodiesterase
964	 30.40	-1	1013544..1014497	+	317	78777166	-	Suden_0968	-	response regulator receiver domain-containing protein
965	 30.29	-1	1014508..1015494	+	328	78777167	-	Suden_0969	-	response regulator receiver domain-containing protein
966	 32.82	0	1015533..1015919	+	128	78777168	-	Suden_0970	-	response regulator receiver domain-containing protein
967	 33.33	0	1015921..1016430	+	169	78777169	-	Suden_0971	-	CheW protein
968	 37.00	0	1016447..1018054	+	535	78777170	-	Suden_0972	-	methyl-accepting chemotaxis sensory transducer
969	 32.58	0	1018057..1018320	+	87	78777171	-	Suden_0973	-	hypothetical protein
970	 36.22	0	1018324..1020399	+	691	78777172	-	Suden_0974	-	CheA signal transduction histidine kinases
971	 34.52	0	1020396..1021241	+	281	78777173	-	Suden_0975	-	MCP methyltransferase, CheR-type
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.