IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
837	 29.84	-1	871097..871354	-	85	78777039	-	Suden_0841	-	hypothetical protein
838	 36.01	0	871434..872780	-	448	78777040	-	Suden_0842	-	DNA repair protein RadA
839	 37.32	0	872885..873763	-	292	78777041	-	Suden_0843	-	cell division transporter substrate-binding protein FtsY
840	 31.90	0	873766..874323	-	185	78777042	-	Suden_0844	-	putative lipoprotein thiredoxin
841	 26.18	-2	874388..874960	+	190	78777043	-	Suden_0845	-	5-formyltetrahydrofolate cyclo-ligase
842	 37.48	0	874962..876530	+	522	78777044	-	Suden_0846	-	phosphodiesterase
843	 33.89	0	876533..877426	-	297	78777045	-	Suden_0847	-	cation efflux protein
844	 34.23	0	877487..878377	+	296	78777046	-	Suden_0848	-	Generic methyltransferase
845	 31.92	0	878374..878868	+	164	78777047	-	Suden_0849	-	thioesterase superfamily protein
846	 37.37	0	878877..879470	-	197	78777048	-	Suden_0850	-	Beta-lactamase-like
847	 35.79	0	879601..880374	+	257	78777049	-	Suden_0851	-	NAD(+) synthase
848	 35.47	0	880384..881505	+	373	78777050	-	Suden_0852	-	DegT/DnrJ/EryC1/StrS aminotransferase
849	 33.09	0	881588..882415	+	275	78777051	lpxK	Suden_0853	-	tetraacyldisaccharide 4'-kinase
850	 38.73	+1	882416..883267	+	283	78777052	-	Suden_0854	-	acetylglutamate kinase
851	 32.99	0	883252..884409	-	385	78777053	-	Suden_0855	-	FAD dependent oxidoreductase
852	 30.69	-1	884508..884810	+	100	78777054	-	Suden_0856	-	hypothetical protein
853	 28.50	-1	884811..885224	+	137	78777055	-	Suden_0857	-	hypothetical protein
854	 36.15	0	885239..886126	+	295	78777056	-	Suden_0858	-	polyprenyl synthetase
855	 35.26	0	886126..887424	+	432	78777057	hemA	Suden_0859	-	glutamyl-tRNA reductase
856	 36.31	0	887425..888732	+	435	78777058	-	Suden_0860	-	prolyl-tRNA synthetase
857	 29.11	-1	888732..889157	+	141	78777059	-	Suden_0861	-	hypothetical protein
858	 31.15	-1	889210..889941	+	243	78777060	-	Suden_0862	-	DSBA oxidoreductase
859	 37.05	0	889942..890883	+	313	78777061	-	Suden_0863	-	hydroxymethylbilane synthase
860	 34.32	0	890886..892703	+	605	78777062	-	Suden_0864	-	3-octaprenyl-4hydroxybenzoate decarboxylase
861	 30.99	-1	892786..893127	+	113	78777063	-	Suden_0865	-	hypothetical protein
862	 35.50	0	893236..894618	+	460	78777064	-	Suden_0866	-	argininosuccinate lyase
863	 34.84	0	894619..895083	+	154	78777065	-	Suden_0867	-	OsmC-like protein
864	 34.59	0	895091..895489	-	132	78777066	-	Suden_0868	-	histidine triad (HIT) protein
865	 37.46	0	895612..896604	+	330	78777067	pheS	Suden_0869	-	phenylalanyl-tRNA synthetase subunit alpha
866	 32.99	0	896601..898937	+	778	78777068	pheT	Suden_0870	-	phenylalanyl-tRNA synthetase subunit beta
867	 37.92	+1	898934..900220	+	428	78777069	-	Suden_0871	-	3-phosphoshikimate 1-carboxyvinyltransferase
868	 32.13	0	900236..901063	+	275	78777070	ispH	Suden_0872	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
869	 34.06	0	901203..902858	+	551	78777071	rpsA	Suden_0873	-	30S ribosomal protein S1
870	 30.42	-1	902864..903343	+	159	78777072	-	Suden_0874	-	hypothetical protein
871	 35.28	0	903343..904932	+	529	78777073	-	Suden_0875	-	D-3-phosphoglycerate dehydrogenase
872	 34.04	0	905022..906710	-	562	78777074	-	Suden_0876	-	AcrB/AcrD/AcrF family cation efflux protein
873	 35.10	0	906710..908296	-	528	78777075	-	Suden_0877	-	AcrB/AcrD/AcrF family protein
874	 34.34	0	908303..909094	-	263	78777076	-	Suden_0878	-	secretion protein HlyD
875	 34.09	0	909091..910542	-	483	78777077	-	Suden_0879	-	Outer membrane efflux protein
876	 33.82	0	910730..911143	+	137	78777078	-	Suden_0880	-	hypothetical protein
877	 30.28	-1	911153..912331	+	392	78777079	-	Suden_0881	-	hypothetical protein
878	 33.33	0	912328..913290	+	320	78777080	-	Suden_0882	-	cation efflux system protein
879	 34.58	0	913295..916342	+	1015	78777081	-	Suden_0883	-	heavy metal efflux pump CzcA
880	 31.66	0	916355..917011	+	218	78777082	-	Suden_0884	-	two component transcriptional regulator
881	 31.22	0	917139..918134	+	331	78777083	-	Suden_0885	-	histidine kinase
882	 30.56	-1	918170..919141	-	323	78777084	-	Suden_0886	-	metal dependent phosphohydrolase
883	 29.28	-1	919230..919550	+	106	78777085	-	Suden_0887	-	hypothetical protein
884	 33.98	0	919550..920167	+	205	78777086	-	Suden_0888	-	pantothenate kinase
885	 37.30	0	920161..920790	+	209	78777087	hisG	Suden_0889	-	ATP phosphoribosyltransferase catalytic subunit
886	 35.09	0	920787..921470	+	227	78777088	-	Suden_0890	-	hypothetical protein
887	 31.36	0	921474..922589	-	371	78777089	-	Suden_0891	-	response regulator receiver sensor signal transduction histidine kinase
888	 32.25	0	922668..923312	+	214	78777090	-	Suden_0892	-	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
889	 33.17	0	923366..923995	+	209	78777091	-	Suden_0893	-	hypothetical protein
890	 35.24	0	924078..925127	+	349	78777092	-	Suden_0894	-	NAD-dependent epimerase/dehydratase
891	 36.47	0	925139..926062	-	307	78777093	pdxA	Suden_0895	-	4-hydroxythreonine-4-phosphate dehydrogenase
892	 41.00	+1	926059..926841	-	260	78777094	-	Suden_0896	-	pyridoxal phosphate biosynthetic protein PdxJ
893	 35.66	0	926974..928908	-	644	78777095	-	Suden_0897	-	hypothetical protein
894	 37.18	0	929082..930851	+	589	78777096	-	Suden_0898	-	protein-disulfide reductase
895	 35.79	0	931158..933437	+	759	78777097	-	Suden_0899	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
896	 35.59	0	933484..934236	-	250	78777098	-	Suden_0900	-	Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
897	 34.32	0	934236..935144	-	302	78777099	-	Suden_0901	-	oxidoreductase-like
898	 36.26	0	935148..936239	-	363	78777100	-	Suden_0902	-	DegT/DnrJ/EryC1/StrS aminotransferase
899	 33.81	0	936270..937316	-	348	78777101	lpxB	Suden_0903	-	lipid-A-disaccharide synthase
900	 34.99	0	937313..937675	-	120	78777102	-	Suden_0904	-	cytochrome c, class I
901	 36.58	0	937744..938943	+	399	78777103	-	Suden_0905	-	dihydroorotase
902	 27.85	-2	938980..939216	+	78	78777104	-	Suden_0906	-	hypothetical protein
903	 38.78	+1	939234..940352	-	372	78777105	tgt	Suden_0907	-	queuine tRNA-ribosyltransferase
904	 36.68	0	940681..941247	+	188	78777106	-	Suden_0908	-	elongation factor P
905	 31.84	0	941386..943932	+	848	78777107	-	Suden_0909	-	diguanylate cyclase/phosphodiesterase
906	 37.57	0	943988..947548	+	1186	78777108	dnaE	Suden_0910	-	DNA polymerase III subunit alpha
907	 32.37	0	947558..947869	+	103	78777109	-	Suden_0911	-	hypothetical protein
908	 39.87	+1	947869..948174	+	101	78777110	-	Suden_0912	-	hypothetical protein
909	 39.44	+1	948199..949458	+	419	78777111	-	Suden_0913	-	putative aminopeptidase 2
910	 34.65	0	949458..950441	+	327	78777112	-	Suden_0914	-	histidine kinase
911	 35.42	0	950497..950784	+	95	78777113	-	Suden_0915	-	hypothetical protein
912	 35.25	0	950861..953986	+	1041	78777114	-	Suden_0916	-	cytochrome c assembly protein
913	 36.75	0	953998..954699	+	233	78777115	-	Suden_0917	-	hypothetical protein
914	 34.28	0	954702..955652	+	316	78777116	hemH	Suden_0918	-	ferrochelatase
915	 35.08	0	955661..956290	+	209	78777117	-	Suden_0919	-	HAD family hydrolase
916	 33.57	0	956335..957579	+	414	78777118	-	Suden_0920	-	hypothetical protein
917	 31.79	0	957568..957957	-	129	78777119	-	Suden_0921	-	hypothetical protein
918	 33.77	0	958014..958925	+	303	78777120	-	Suden_0922	-	cation efflux protein
919	 36.55	0	959017..959763	+	248	78777121	-	Suden_0923	-	molybdenum ABC transporter periplasmic-binding protein
920	 32.59	0	959760..960164	+	134	78777122	-	Suden_0924	-	hypothetical protein
921	 36.42	0	960184..960864	+	226	78777123	-	Suden_0925	-	molybdate ABC transporter permease
922	 33.33	0	960861..961733	+	290	78777124	-	Suden_0926	-	ABC transporter-related protein
923	 37.18	0	961873..965619	+	1248	78777125	-	Suden_0927	-	hypothetical protein
924	 37.96	+1	965616..966911	+	431	78777126	-	Suden_0928	-	calcium-binding EF-hand
925	 36.94	0	966916..969132	+	738	78777127	-	Suden_0929	-	adenylate/guanylate cyclase
926	 34.76	0	969134..971524	+	796	78777128	-	Suden_0930	-	metal dependent phosphohydrolase
927	 34.08	0	971671..971937	+	88	78777129	-	Suden_0931	-	hypothetical protein
928	 33.07	0	971942..973486	+	514	78777130	-	Suden_0932	-	hypothetical protein
929	 32.91	0	973559..974983	+	474	78777131	-	Suden_0933	-	phytoene dehydrogenase and related proteins-like
930	 32.15	0	974976..975986	+	336	78777132	-	Suden_0934	-	histidine kinase internal region
931	 34.19	0	975967..976665	+	232	78777133	-	Suden_0935	-	LytR/AlgR family transcriptional regulator
932	 33.12	0	977061..977537	+	158	78777134	-	Suden_0936	-	hypothetical protein
933	 31.85	0	977588..977857	+	89	78777135	-	Suden_0937	-	hypothetical protein
934	 33.08	0	977850..979031	+	393	78777136	-	Suden_0938	-	Phage integrase
935	 29.10	-1	979298..980881	+	527	78777137	-	Suden_0939	-	HipA-like-like
936	 34.70	0	980976..981194	+	72	78777138	-	Suden_0940	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.