IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
768	 38.38	+1	796010..797455	-	481	78776969	-	Suden_0770	-	inositol-5-monophosphate dehydrogenase
769	 29.96	-1	797631..798431	+	266	78776970	-	Suden_0771	-	hypothetical protein
770	 32.98	0	798450..798734	-	94	78776971	-	Suden_0772	-	heavy metal transport/detoxification protein
771	 39.73	+1	798759..800102	-	447	78776972	gatA	Suden_0773	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
772	 31.15	-1	800252..800938	-	228	78776973	-	Suden_0774	-	filamentation induced by cAMP protein Fic
773	 24.00	-2	800940..802622	-	560	78776974	-	Suden_0775	-	hypothetical protein
774	 28.45	-1	802640..803602	-	320	78776975	-	Suden_0776	-	hypothetical protein
775	 25.48	-2	803994..804770	-	258	78776976	-	Suden_0777	-	hypothetical protein
776	 29.41	-1	804773..805027	-	84	78776977	-	Suden_0778	-	hypothetical protein
777	 33.02	0	805318..806280	+	320	78776978	-	Suden_0779	-	integron integrase
778	 37.54	0	806382..809141	-	919	78776979	ileS	Suden_0780	-	isoleucyl-tRNA synthetase
779	 32.60	0	809263..810351	+	362	78776980	-	Suden_0781	-	CinA-like
780	 32.64	0	811188..812336	-	382	78776981	-	Suden_0782	-	cell cycle protein
781	 34.47	0	812350..813321	+	323	78776982	-	Suden_0783	-	pseudouridine synthase, RluD
782	 33.56	0	813344..814678	+	444	78776983	-	Suden_0784	-	fibronectin, type III
783	 31.29	0	814690..815862	+	390	78776984	trmB	Suden_0785	-	tRNA (guanine-N(7))-methyltransferase
784	 34.08	0	815855..816526	+	223	78776985	-	Suden_0786	-	ABC transporter-related protein
785	 32.96	0	816513..817325	+	270	78776986	-	Suden_0787	-	hypothetical protein
786	 33.09	0	817322..818548	+	408	78776987	-	Suden_0788	-	peptidase M23B
787	 34.56	0	818616..820088	+	490	78776988	-	Suden_0789	-	threonine synthase
788	 32.39	0	820123..820761	+	212	78776989	-	Suden_0790	-	hypothetical protein
789	 38.08	+1	820861..821619	-	252	78776990	-	Suden_0791	-	pyrroline-5-carboxylate reductase
790	 38.04	+1	821696..822928	+	410	78776991	-	Suden_0792	-	gamma-glutamyl phosphate reductase GPR
791	 34.80	0	823029..823370	+	113	78776992	-	Suden_0793	-	hypothetical protein
792	 34.55	0	823380..824615	+	411	78776993	-	Suden_0794	-	hypothetical protein
793	 36.30	0	824625..824927	+	100	78776994	-	Suden_0795	-	hypothetical protein
794	 28.88	-1	824924..825910	-	328	78776995	-	Suden_0796	-	response regulator receiver domain-containing protein
795	 35.06	0	826014..826937	+	307	78776996	mraW	Suden_0797	-	S-adenosyl-methyltransferase MraW
796	 30.47	-1	826934..827212	+	92	78776997	-	Suden_0798	-	hypothetical protein
797	 34.13	0	827222..830356	+	1044	78776998	-	Suden_0799	-	acriflavin resistance protein
798	 29.10	-1	830503..831612	-	369	78776999	-	Suden_0800	-	Phage integrase
799	 26.50	-2	831670..831903	-	77	78777000	-	Suden_0801	-	hypothetical protein
800	 33.51	0	831907..833580	-	557	78777001	-	Suden_0802	-	DnaB-like helicase-like
801	 32.37	0	833577..834197	-	206	78777002	-	Suden_0803	-	hypothetical protein
802	 27.43	-2	834315..835025	+	236	78777003	-	Suden_0804	-	hypothetical protein
803	 37.32	0	835845..839126	-	1093	78777004	-	Suden_0805	-	hypothetical protein
804	 32.50	0	839156..842503	-	1115	78777005	-	Suden_0806	-	hypothetical protein
805	 25.51	-2	842513..842998	-	161	78777006	-	Suden_0807	-	hypothetical protein
806	 26.26	-2	843000..843437	-	145	78777007	-	Suden_0808	-	CopG-like DNA-binding
807	 27.62	-2	843734..844363	-	209	78777008	-	Suden_0809	-	hypothetical protein
808	 33.99	0	844491..844793	+	100	78777009	-	Suden_0810	-	hypothetical protein
809	 31.35	0	844796..845098	+	100	78777010	-	Suden_0811	-	hypothetical protein
810	 30.98	-1	845155..845409	-	84	78777011	-	Suden_0812	-	plasmid stabilization system protein
811	 31.48	0	845399..845614	-	71	78777012	-	Suden_0813	-	CopG-like DNA-binding
812	 34.55	0	846136..846381	+	81	78777013	-	Suden_0814	-	hypothetical protein
813	 22.34	-2	846381..846653	+	90	78777014	-	Suden_0815	-	plasmid stabilization system protein
814	 29.46	-1	846911..847891	-	326	78777015	-	Suden_0816	-	cysteine sulfinate desulfinase/cysteine desulfurase
815	 32.25	0	847911..848741	-	276	78777016	-	Suden_0817	-	formate dehydrogenase accessory protein
816	 35.65	0	848748..849695	-	315	78777017	-	Suden_0818	-	hypothetical protein
817	 39.42	+1	849705..850295	-	196	78777018	-	Suden_0819	-	4Fe-4S ferredoxin, iron-sulfur binding
818	 38.66	+1	850305..853103	-	932	159162019	-	Suden_0820	-	formate dehydrogenase alpha subunit
819	 40.00	+1	853254..853478	-	74	78777021	-	Suden_0822	-	twin-arginine translocation pathway signal
820	 34.80	0	853554..854168	-	204	78777022	-	Suden_0823	-	hypothetical protein
821	 35.19	0	854161..855834	-	557	78777023	-	Suden_0824	-	4Fe-4S ferredoxin, iron-sulfur binding
822	 31.06	-1	855986..857128	+	380	78777024	-	Suden_0825	-	extracellular ligand-binding receptor
823	 28.49	-1	857118..858707	+	529	78777025	-	Suden_0826	-	histidine kinase
824	 30.03	-1	858697..859362	+	221	78777026	-	Suden_0827	-	response regulator receiver domain-containing protein
825	 34.55	0	859433..859678	-	81	78777027	-	Suden_0828	-	hypothetical protein
826	 37.10	0	859668..860888	-	406	78777028	-	Suden_0829	-	putative inner membrane protein
827	 36.81	0	861234..862211	+	325	78777029	-	Suden_0830	-	selenophosphate synthase
828	 32.96	0	862375..863724	+	449	78777030	-	Suden_0831	-	selenocysteine synthase
829	 32.19	0	863717..865552	+	611	78777031	-	Suden_0832	-	translation elongation factor, selenocysteine-specific
830	 37.96	+1	866505..866720	+	71	78777032	-	Suden_0834	-	hypothetical protein
831	 36.27	0	867022..867327	+	101	78777033	-	Suden_0835	-	hypothetical protein
832	 30.46	-1	867589..869052	-	487	78777034	-	Suden_0836	-	diguanylate cyclase
833	 26.30	-2	869079..869888	-	269	78777035	-	Suden_0837	-	two component transcriptional regulator
834	 30.88	-1	869922..870125	+	67	78777036	-	Suden_0838	-	ThiS, thiamine-biosynthesis
835	 36.89	0	870102..870467	-	121	78777037	acpS	Suden_0839	-	4'-phosphopantetheinyl transferase
836	 30.85	-1	870468..871031	-	187	78777038	fliL	Suden_0840	-	flagellar basal body-associated protein FliL
837	 29.84	-1	871097..871354	-	85	78777039	-	Suden_0841	-	hypothetical protein
838	 36.01	0	871434..872780	-	448	78777040	-	Suden_0842	-	DNA repair protein RadA
839	 37.32	0	872885..873763	-	292	78777041	-	Suden_0843	-	cell division transporter substrate-binding protein FtsY
840	 31.90	0	873766..874323	-	185	78777042	-	Suden_0844	-	putative lipoprotein thiredoxin
841	 26.18	-2	874388..874960	+	190	78777043	-	Suden_0845	-	5-formyltetrahydrofolate cyclo-ligase
842	 37.48	0	874962..876530	+	522	78777044	-	Suden_0846	-	phosphodiesterase
843	 33.89	0	876533..877426	-	297	78777045	-	Suden_0847	-	cation efflux protein
844	 34.23	0	877487..878377	+	296	78777046	-	Suden_0848	-	Generic methyltransferase
845	 31.92	0	878374..878868	+	164	78777047	-	Suden_0849	-	thioesterase superfamily protein
846	 37.37	0	878877..879470	-	197	78777048	-	Suden_0850	-	Beta-lactamase-like
847	 35.79	0	879601..880374	+	257	78777049	-	Suden_0851	-	NAD(+) synthase
848	 35.47	0	880384..881505	+	373	78777050	-	Suden_0852	-	DegT/DnrJ/EryC1/StrS aminotransferase
849	 33.09	0	881588..882415	+	275	78777051	lpxK	Suden_0853	-	tetraacyldisaccharide 4'-kinase
850	 38.73	+1	882416..883267	+	283	78777052	-	Suden_0854	-	acetylglutamate kinase
851	 32.99	0	883252..884409	-	385	78777053	-	Suden_0855	-	FAD dependent oxidoreductase
852	 30.69	-1	884508..884810	+	100	78777054	-	Suden_0856	-	hypothetical protein
853	 28.50	-1	884811..885224	+	137	78777055	-	Suden_0857	-	hypothetical protein
854	 36.15	0	885239..886126	+	295	78777056	-	Suden_0858	-	polyprenyl synthetase
855	 35.26	0	886126..887424	+	432	78777057	hemA	Suden_0859	-	glutamyl-tRNA reductase
856	 36.31	0	887425..888732	+	435	78777058	-	Suden_0860	-	prolyl-tRNA synthetase
857	 29.11	-1	888732..889157	+	141	78777059	-	Suden_0861	-	hypothetical protein
858	 31.15	-1	889210..889941	+	243	78777060	-	Suden_0862	-	DSBA oxidoreductase
859	 37.05	0	889942..890883	+	313	78777061	-	Suden_0863	-	hydroxymethylbilane synthase
860	 34.32	0	890886..892703	+	605	78777062	-	Suden_0864	-	3-octaprenyl-4hydroxybenzoate decarboxylase
861	 30.99	-1	892786..893127	+	113	78777063	-	Suden_0865	-	hypothetical protein
862	 35.50	0	893236..894618	+	460	78777064	-	Suden_0866	-	argininosuccinate lyase
863	 34.84	0	894619..895083	+	154	78777065	-	Suden_0867	-	OsmC-like protein
864	 34.59	0	895091..895489	-	132	78777066	-	Suden_0868	-	histidine triad (HIT) protein
865	 37.46	0	895612..896604	+	330	78777067	pheS	Suden_0869	-	phenylalanyl-tRNA synthetase subunit alpha
866	 32.99	0	896601..898937	+	778	78777068	pheT	Suden_0870	-	phenylalanyl-tRNA synthetase subunit beta
867	 37.92	+1	898934..900220	+	428	78777069	-	Suden_0871	-	3-phosphoshikimate 1-carboxyvinyltransferase
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.