IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 38.06	+1	748712..749113	-	133	78776924	-	Suden_0725	-	BadM/Rrf2 family transcriptional regulator
724	 31.52	0	749250..749525	+	91	78776925	rpsO	Suden_0726	-	30S ribosomal protein S15
725	 35.01	0	749688..750404	-	238	78776926	-	Suden_0727	-	3-deoxy-manno-octulosonate cytidylyltransferase
726	 33.33	0	750469..751164	+	231	78776927	-	Suden_0728	-	methyltransferase small
727	 36.20	0	751152..751535	+	127	78776928	-	Suden_0729	-	hypothetical protein
728	 30.37	-1	751525..752808	+	427	78776929	-	Suden_0730	-	TPR repeat-containing protein
729	 35.73	0	752805..753596	+	263	78776930	-	Suden_0731	-	indole-3-glycerol-phosphate synthase
730	 35.81	0	753617..754060	-	147	78776931	-	Suden_0732	-	hypothetical protein
731	 36.79	0	754138..754860	+	240	78776932	flgH	Suden_0733	-	flagellar basal body L-ring protein
732	 31.25	0	754985..756280	+	431	78776933	-	Suden_0734	-	hypothetical protein
733	 29.54	-1	756284..757495	+	403	78776934	-	Suden_0735	-	diguanylate cyclase/phosphodiesterase
734	 36.75	0	757479..759116	-	545	78776935	-	Suden_0736	-	sulphate anion transporter
735	 38.93	+1	759123..761750	-	875	78776936	valS	Suden_0737	-	valyl-tRNA synthetase
736	 29.58	-1	761899..762723	-	274	78776937	-	Suden_0738	-	diguanylate cyclase
737	 39.36	+1	762850..763347	+	165	78776938	-	Suden_0739	-	rubrerythrin
738	 37.04	0	763443..765521	+	692	78776939	-	Suden_0740	-	UvrD/REP helicase
739	 38.15	+1	765562..766101	+	179	78776940	-	Suden_0741	-	cytochrome c, class I
740	 40.51	+1	766108..767319	-	403	78776941	-	Suden_0742	-	tryptophan synthase subunit beta
741	 31.21	0	767428..767850	+	140	78776942	-	Suden_0743	-	hypothetical protein
742	 32.31	0	767844..768626	-	260	78776943	-	Suden_0744	-	hypothetical protein
743	 34.23	0	768793..770130	+	445	78776944	-	Suden_0745	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
744	 38.56	+1	770318..772021	-	567	78776945	-	Suden_0746	-	hemolysin activation/secretion protein-like
745	 37.95	+1	772033..773397	-	454	78776946	-	Suden_0747	-	GLUG
746	 38.53	+1	773673..774845	-	390	78776947	-	Suden_0748	-	filamentous haemagglutinin-like
747	 29.58	-1	774979..775671	+	230	78776948	-	Suden_0749	-	two component transcriptional regulator
748	 31.93	0	775673..777523	+	616	78776949	-	Suden_0750	-	histidine kinase
749	 35.41	0	777675..779696	+	673	78776950	-	Suden_0751	-	polysaccharide deacetylase
750	 38.48	+1	779706..781007	+	433	78776951	-	Suden_0752	-	N-glycosyltransferase PgaC
751	 34.47	0	781010..781447	+	145	78776952	-	Suden_0753	-	hypothetical protein
752	 38.71	+1	781444..782634	-	396	78776953	-	Suden_0754	-	HI0933-like protein
753	 36.48	0	782634..784856	-	740	78776954	-	Suden_0755	-	recombination and DNA strand exchange inhibitor protein
754	 33.03	0	784847..785176	-	109	78776955	-	Suden_0756	-	hypothetical protein
755	 36.61	0	785176..786489	-	437	78776956	murC	Suden_0757	-	UDP-N-acetylmuramate--L-alanine ligase
756	 34.91	0	786494..787000	-	168	78776957	-	Suden_0758	-	hypothetical protein
757	 35.09	0	786997..788133	-	378	78776958	-	Suden_0759	-	hypothetical protein
758	 32.00	0	788195..788719	-	174	78776959	-	Suden_0760	-	hypothetical protein
759	 37.32	0	788716..789393	-	225	78776960	-	Suden_0761	-	UBA/THIF-type NAD/FAD binding fold
760	 33.96	0	789390..790187	-	265	78776961	-	Suden_0762	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
761	 36.30	0	790187..790456	-	89	78776962	-	Suden_0763	-	hypothetical protein
762	 34.32	0	790482..791591	-	369	78776963	-	Suden_0764	-	homoserine O-acetyltransferase
763	 37.44	0	791595..792860	-	421	78776964	-	Suden_0765	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
764	 35.66	0	792937..793323	-	128	78776965	-	Suden_0766	-	hypothetical protein
765	 31.67	0	793344..794306	-	320	78776966	-	Suden_0767	-	C4-dicarboxylate transporter/malic acid transport protein
766	 33.43	0	794462..795502	+	346	78776967	-	Suden_0768	-	hypothetical protein
767	 32.11	0	795514..796005	-	163	78776968	-	Suden_0769	-	RDD protein
768	 38.38	+1	796010..797455	-	481	78776969	-	Suden_0770	-	inositol-5-monophosphate dehydrogenase
769	 29.96	-1	797631..798431	+	266	78776970	-	Suden_0771	-	hypothetical protein
770	 32.98	0	798450..798734	-	94	78776971	-	Suden_0772	-	heavy metal transport/detoxification protein
771	 39.73	+1	798759..800102	-	447	78776972	gatA	Suden_0773	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
772	 31.15	-1	800252..800938	-	228	78776973	-	Suden_0774	-	filamentation induced by cAMP protein Fic
773	 24.00	-2	800940..802622	-	560	78776974	-	Suden_0775	-	hypothetical protein
774	 28.45	-1	802640..803602	-	320	78776975	-	Suden_0776	-	hypothetical protein
775	 25.48	-2	803994..804770	-	258	78776976	-	Suden_0777	-	hypothetical protein
776	 29.41	-1	804773..805027	-	84	78776977	-	Suden_0778	-	hypothetical protein
777	 33.02	0	805318..806280	+	320	78776978	-	Suden_0779	-	integron integrase
778	 37.54	0	806382..809141	-	919	78776979	ileS	Suden_0780	-	isoleucyl-tRNA synthetase
779	 32.60	0	809263..810351	+	362	78776980	-	Suden_0781	-	CinA-like
780	 32.64	0	811188..812336	-	382	78776981	-	Suden_0782	-	cell cycle protein
781	 34.47	0	812350..813321	+	323	78776982	-	Suden_0783	-	pseudouridine synthase, RluD
782	 33.56	0	813344..814678	+	444	78776983	-	Suden_0784	-	fibronectin, type III
783	 31.29	0	814690..815862	+	390	78776984	trmB	Suden_0785	-	tRNA (guanine-N(7))-methyltransferase
784	 34.08	0	815855..816526	+	223	78776985	-	Suden_0786	-	ABC transporter-related protein
785	 32.96	0	816513..817325	+	270	78776986	-	Suden_0787	-	hypothetical protein
786	 33.09	0	817322..818548	+	408	78776987	-	Suden_0788	-	peptidase M23B
787	 34.56	0	818616..820088	+	490	78776988	-	Suden_0789	-	threonine synthase
788	 32.39	0	820123..820761	+	212	78776989	-	Suden_0790	-	hypothetical protein
789	 38.08	+1	820861..821619	-	252	78776990	-	Suden_0791	-	pyrroline-5-carboxylate reductase
790	 38.04	+1	821696..822928	+	410	78776991	-	Suden_0792	-	gamma-glutamyl phosphate reductase GPR
791	 34.80	0	823029..823370	+	113	78776992	-	Suden_0793	-	hypothetical protein
792	 34.55	0	823380..824615	+	411	78776993	-	Suden_0794	-	hypothetical protein
793	 36.30	0	824625..824927	+	100	78776994	-	Suden_0795	-	hypothetical protein
794	 28.88	-1	824924..825910	-	328	78776995	-	Suden_0796	-	response regulator receiver domain-containing protein
795	 35.06	0	826014..826937	+	307	78776996	mraW	Suden_0797	-	S-adenosyl-methyltransferase MraW
796	 30.47	-1	826934..827212	+	92	78776997	-	Suden_0798	-	hypothetical protein
797	 34.13	0	827222..830356	+	1044	78776998	-	Suden_0799	-	acriflavin resistance protein
798	 29.10	-1	830503..831612	-	369	78776999	-	Suden_0800	-	Phage integrase
799	 26.50	-2	831670..831903	-	77	78777000	-	Suden_0801	-	hypothetical protein
800	 33.51	0	831907..833580	-	557	78777001	-	Suden_0802	-	DnaB-like helicase-like
801	 32.37	0	833577..834197	-	206	78777002	-	Suden_0803	-	hypothetical protein
802	 27.43	-2	834315..835025	+	236	78777003	-	Suden_0804	-	hypothetical protein
803	 37.32	0	835845..839126	-	1093	78777004	-	Suden_0805	-	hypothetical protein
804	 32.50	0	839156..842503	-	1115	78777005	-	Suden_0806	-	hypothetical protein
805	 25.51	-2	842513..842998	-	161	78777006	-	Suden_0807	-	hypothetical protein
806	 26.26	-2	843000..843437	-	145	78777007	-	Suden_0808	-	CopG-like DNA-binding
807	 27.62	-2	843734..844363	-	209	78777008	-	Suden_0809	-	hypothetical protein
808	 33.99	0	844491..844793	+	100	78777009	-	Suden_0810	-	hypothetical protein
809	 31.35	0	844796..845098	+	100	78777010	-	Suden_0811	-	hypothetical protein
810	 30.98	-1	845155..845409	-	84	78777011	-	Suden_0812	-	plasmid stabilization system protein
811	 31.48	0	845399..845614	-	71	78777012	-	Suden_0813	-	CopG-like DNA-binding
812	 34.55	0	846136..846381	+	81	78777013	-	Suden_0814	-	hypothetical protein
813	 22.34	-2	846381..846653	+	90	78777014	-	Suden_0815	-	plasmid stabilization system protein
814	 29.46	-1	846911..847891	-	326	78777015	-	Suden_0816	-	cysteine sulfinate desulfinase/cysteine desulfurase
815	 32.25	0	847911..848741	-	276	78777016	-	Suden_0817	-	formate dehydrogenase accessory protein
816	 35.65	0	848748..849695	-	315	78777017	-	Suden_0818	-	hypothetical protein
817	 39.42	+1	849705..850295	-	196	78777018	-	Suden_0819	-	4Fe-4S ferredoxin, iron-sulfur binding
818	 38.66	+1	850305..853103	-	932	159162019	-	Suden_0820	-	formate dehydrogenase alpha subunit
819	 40.00	+1	853254..853478	-	74	78777021	-	Suden_0822	-	twin-arginine translocation pathway signal
820	 34.80	0	853554..854168	-	204	78777022	-	Suden_0823	-	hypothetical protein
821	 35.19	0	854161..855834	-	557	78777023	-	Suden_0824	-	4Fe-4S ferredoxin, iron-sulfur binding
822	 31.06	-1	855986..857128	+	380	78777024	-	Suden_0825	-	extracellular ligand-binding receptor
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.