IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 32.69	0	644445..645377	-	310	78776832	-	Suden_0633	-	radical SAM family protein
632	 37.31	0	645378..646409	-	343	78776833	hemE	Suden_0634	-	uroporphyrinogen decarboxylase
633	 33.53	0	646430..646948	-	172	78776834	-	Suden_0635	-	hypothetical protein
634	 36.71	0	646952..647986	-	344	78776835	-	Suden_0636	-	aspartate-semialdehyde dehydrogenase
635	 33.85	0	648014..649168	-	384	78776836	-	Suden_0637	-	response regulator receiver domain-containing protein
636	 33.33	0	649168..649590	-	140	78776837	-	Suden_0638	-	hypothetical protein
637	 38.00	+1	649536..650114	-	192	78776838	-	Suden_0639	-	hypothetical protein
638	 36.07	0	650160..652643	-	827	78776839	-	Suden_0640	-	DNA gyrase subunit A
639	 39.97	+1	652866..654116	+	416	78776840	-	Suden_0641	-	ammonium transporter
640	 36.58	0	654245..654583	+	112	78776841	-	Suden_0642	-	nitrogen regulatory protein P-II (GlnB, GlnK)
641	 37.07	0	654669..655844	+	391	78776842	-	Suden_0643	-	Rh-like protein/ammonium transporter
642	 31.05	-1	655887..656588	+	233	78776843	-	Suden_0644	-	TonB-like
643	 30.51	-1	656677..658656	+	659	78776844	-	Suden_0645	-	diguanylate cyclase
644	 35.05	0	658673..659428	+	251	78776845	-	Suden_0646	-	3(2),5 -bisphosphate nucleotidase
645	 37.42	0	659937..660695	+	252	78776846	-	Suden_0647	-	TraT complement resistance
646	 34.74	0	660791..661714	+	307	78776847	-	Suden_0648	-	von Willebrand factor, type A
647	 34.46	0	661711..663126	+	471	78776848	-	Suden_0649	-	von Willebrand factor, type A
648	 33.06	0	663107..664222	+	371	78776849	-	Suden_0650	-	hypothetical protein
649	 35.62	0	664269..665273	+	334	78776850	-	Suden_0651	-	hypothetical protein
650	 35.74	0	665273..666271	+	332	78776851	-	Suden_0652	-	hypothetical protein
651	 38.19	+1	666433..667380	+	315	78776852	-	Suden_0653	-	ATPase
652	 33.57	0	667388..668218	+	276	78776853	-	Suden_0654	-	hypothetical protein
653	 35.05	0	668218..668625	+	135	78776854	-	Suden_0655	-	hypothetical protein
654	 33.76	0	668618..669547	+	309	78776855	-	Suden_0656	-	von Willebrand factor, type A
655	 34.73	0	669544..671331	+	595	78776856	-	Suden_0657	-	von Willebrand factor, type A
656	 33.13	0	671315..672775	+	486	78776857	-	Suden_0658	-	hypothetical protein
657	 35.50	0	672772..673602	-	276	78776858	-	Suden_0659	-	prephenate dehydrogenase
658	 34.79	0	673702..675969	+	755	78776859	-	Suden_0660	-	surface antigen (D15)
659	 33.54	0	676068..677537	-	489	78776860	-	Suden_0661	-	Ppx/GppA phosphatase
660	 38.04	+1	677546..677800	-	84	78776861	-	Suden_0662	-	4Fe-4S ferredoxin, iron-sulfur binding
661	 32.49	0	677913..679211	-	432	78776862	-	Suden_0663	-	histidine kinase
662	 34.45	0	679389..680102	-	237	78776863	-	Suden_0664	-	two component transcriptional regulator
663	 23.03	-2	680166..680495	-	109	78776864	-	Suden_0665	-	dihydroneopterin aldolase
664	 39.02	+1	680492..681106	-	204	78776865	-	Suden_0666	-	putative glycerol-3-phosphate acyltransferase PlsY
665	 35.94	0	681223..682221	+	332	78776866	-	Suden_0667	-	quinolinate synthetase
666	 34.44	0	682218..683033	+	271	78776867	-	Suden_0668	-	nicotinate-nucleotide pyrophosphorylase
667	 34.76	0	683042..684094	+	350	78776868	flhB	Suden_0669	-	flagellar biosynthesis protein FlhB
668	 32.54	0	684132..685013	+	293	78776869	-	Suden_0670	-	exopolyphosphatase-like protein
669	 33.02	0	685089..686384	+	431	78776870	-	Suden_0671	-	peptidase M23B
670	 33.90	0	686417..687301	+	294	78776871	lpxC	Suden_0672	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
671	 31.39	0	687294..687755	+	153	78776872	-	Suden_0673	-	hypothetical protein
672	 33.90	0	687763..688644	+	293	78776873	-	Suden_0674	-	homoserine kinase
673	 31.82	0	688688..688951	+	87	78776874	-	Suden_0675	-	hypothetical protein
674	 36.11	0	688935..691559	+	874	78776875	infB	Suden_0676	-	translation initiation factor IF-2
675	 34.47	0	691556..691906	+	116	78776876	rbfA	Suden_0677	-	ribosome-binding factor A
676	 34.44	0	691919..692368	+	149	78776877	-	Suden_0678	-	hypothetical protein
677	 34.03	0	692362..693372	+	336	78776878	-	Suden_0679	-	riboflavin biosynthesis protein RibD
678	 34.17	0	693376..694095	+	239	78776879	ubiE	Suden_0680	-	ubiquinone/menaquinone biosynthesis methyltransferase
679	 35.73	0	694105..695355	+	416	78776880	xseA	Suden_0681	-	exodeoxyribonuclease VII large subunit
680	 35.68	0	695364..695960	+	198	78776881	-	Suden_0682	-	hypothetical protein
681	 28.71	-1	696021..696431	+	136	78776882	-	Suden_0683	-	hypothetical protein
682	 36.97	0	696436..696903	+	155	78776883	-	Suden_0684	-	methylated-DNA--(protein)-cysteine S-methyltransferase
683	 35.75	0	696906..697775	-	289	78776884	-	Suden_0685	-	peptidase S49, SppA
684	 36.59	0	697775..699001	-	408	78776885	-	Suden_0686	-	chlorohydrolase
685	 37.27	0	699094..699576	+	160	78776886	-	Suden_0687	-	3-dehydroquinate dehydratase
686	 29.22	-1	699580..700065	+	161	78776887	-	Suden_0688	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
687	 34.38	0	700062..700445	+	127	78776888	-	Suden_0689	-	hypothetical protein
688	 29.82	-1	700491..702143	-	550	78776889	-	Suden_0690	-	hypothetical protein
689	 30.33	-1	702140..703537	-	465	78776890	-	Suden_0691	-	hypothetical protein
690	 29.94	-1	703830..704477	+	215	78776891	-	Suden_0692	-	hypothetical protein
691	 37.48	0	704470..706326	+	618	78776892	-	Suden_0693	-	integrase catalytic subunit
692	 37.90	+1	706330..707271	+	313	78776893	-	Suden_0694	-	TniB
693	 32.81	0	707268..708404	+	378	78776894	-	Suden_0695	-	hypothetical protein
694	 27.73	-2	708415..708771	-	118	78776895	-	Suden_0696	-	transposase
695	 30.89	-1	708945..710537	+	530	78776896	-	Suden_0697	-	N-6 DNA methylase
696	 29.69	-1	710538..710921	+	127	78776897	-	Suden_0698	-	hypothetical protein
697	 24.98	-2	710963..711967	+	334	78776898	-	Suden_0699	-	hypothetical protein
698	 24.57	-2	711970..714114	+	714	78776899	-	Suden_0700	-	ATPase
699	 25.55	-2	714098..716308	+	736	78776900	-	Suden_0701	-	hypothetical protein
700	 34.99	0	716298..717803	-	501	78776901	-	Suden_0702	-	hypothetical protein
701	 32.87	0	717883..718971	+	362	78776902	flhF	Suden_0703	-	flagellar biosynthesis regulator FlhF
702	 34.59	0	718968..719843	+	291	78776903	-	Suden_0704	-	cobyrinic acid a,c-diamide synthase
703	 30.93	-1	719863..720195	+	110	78776904	-	Suden_0705	-	hypothetical protein
704	 34.94	0	720192..720875	+	227	78776905	fliA	Suden_0706	-	flagellar biosynthesis sigma factor
705	 36.28	0	720877..721995	+	372	78776906	fliM	Suden_0707	-	flagellar motor switch protein FliM
706	 33.10	0	721999..722850	+	283	78776907	-	Suden_0708	-	flagellar motor switch protein FliY
707	 30.64	-1	722865..723644	+	259	78776908	-	Suden_0709	-	hypothetical protein
708	 34.31	0	723637..724662	+	341	78776909	trmU	Suden_0710	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
709	 30.15	-1	730402..731406	-	334	78776910	-	Suden_0711	-	endonuclease/exonuclease/phosphatase
710	 34.46	0	731406..733355	-	649	78776911	-	Suden_0712	-	oligopeptidase A
711	 34.16	0	733359..734447	-	362	78776912	-	Suden_0713	-	peptidase S1 and S6, chymotrypsin/Hap
712	 31.28	0	734450..735763	-	437	78776913	-	Suden_0714	-	hypothetical protein
713	 28.76	-1	735942..737492	+	516	78776914	-	Suden_0715	-	diguanylate cyclase
714	 38.50	+1	737557..738369	+	270	78776915	-	Suden_0716	-	formate/nitrite transporter
715	 37.11	0	738544..739257	+	237	78776916	pyrH	Suden_0717	-	uridylate kinase
716	 31.51	0	739289..739507	+	72	78776917	-	Suden_0718	-	RNA polymerase Rpb6
717	 33.24	0	739518..741665	+	715	78776918	-	Suden_0719	-	metal dependent phosphohydrolase
718	 35.33	0	741717..742916	+	399	78776919	-	Suden_0720	-	tyrosyl-tRNA synthetase
719	 38.55	+1	742916..744007	+	363	78776920	-	Suden_0721	-	2-nitropropane dioxygenase, NPD
720	 33.76	0	744016..745425	+	469	78776921	-	Suden_0722	-	N-acetylmuramoyl-L-alanine amidase
721	 33.80	0	745442..746521	-	359	78776922	-	Suden_0723	-	hypothetical protein
722	 36.97	0	746536..748707	-	723	78776923	flhA	Suden_0724	-	flagellar biosynthesis protein FlhA
723	 38.06	+1	748712..749113	-	133	78776924	-	Suden_0725	-	BadM/Rrf2 family transcriptional regulator
724	 31.52	0	749250..749525	+	91	78776925	rpsO	Suden_0726	-	30S ribosomal protein S15
725	 35.01	0	749688..750404	-	238	78776926	-	Suden_0727	-	3-deoxy-manno-octulosonate cytidylyltransferase
726	 33.33	0	750469..751164	+	231	78776927	-	Suden_0728	-	methyltransferase small
727	 36.20	0	751152..751535	+	127	78776928	-	Suden_0729	-	hypothetical protein
728	 30.37	-1	751525..752808	+	427	78776929	-	Suden_0730	-	TPR repeat-containing protein
729	 35.73	0	752805..753596	+	263	78776930	-	Suden_0731	-	indole-3-glycerol-phosphate synthase
730	 35.81	0	753617..754060	-	147	78776931	-	Suden_0732	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.