IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
405	 34.97	0	401884..403167	+	427	78776606	-	Suden_0405	-	peptidase M16-like
406	 36.09	0	403259..405073	+	604	78776607	-	Suden_0406	-	DEAD/DEAH box helicase-like
407	 32.78	0	405128..405670	-	180	78776608	-	Suden_0407	-	sigma 54 modulation protein/ribosomal protein S30EA
408	 35.48	0	405736..406155	-	139	78776609	-	Suden_0408	-	hypothetical protein
409	 38.21	+1	406182..407084	-	300	78776610	-	Suden_0409	-	hypothetical protein
410	 36.84	0	407084..407710	-	208	78776611	-	Suden_0410	-	hypothetical protein
411	 35.92	0	407704..409677	-	657	78776612	-	Suden_0411	-	hypothetical protein
412	 32.28	0	409777..410157	-	126	78776613	-	Suden_0412	-	flagellar assembly protein FliW
413	 34.84	0	410278..411138	+	286	78776614	-	Suden_0413	-	DNA uptake lipoprotein-like
414	 36.15	0	411128..413539	+	803	78776615	-	Suden_0414	-	peptidase S16, ATP-dependent protease La
415	 32.00	0	413536..413910	-	124	78776616	-	Suden_0415	-	response regulator receiver domain-containing protein
416	 33.37	0	414019..416709	-	896	78776617	-	Suden_0416	-	histidine kinase
417	 29.69	-1	416781..417164	-	127	78776618	-	Suden_0417	-	putative PAS/PAC sensor protein
418	 34.55	0	417232..419034	-	600	78776619	uvrC	Suden_0418	-	excinuclease ABC subunit C
419	 29.41	-1	419024..419482	-	152	78776620	-	Suden_0419	-	hypothetical protein
420	 37.40	0	419638..421089	+	483	78776621	-	Suden_0420	-	L-aspartate oxidase
421	 36.75	0	421082..422455	+	457	78776622	-	Suden_0421	-	transporter, putative
422	 37.91	+1	422554..424104	+	516	78776623	guaA	Suden_0422	-	bifunctional GMP synthase/glutamine amidotransferase protein
423	 33.80	0	424115..424753	+	212	78776624	hemD	Suden_0423	-	uroporphyrinogen-III synthase
424	 37.47	0	425069..426349	+	426	78776625	-	Suden_0424	-	phosphoribosylamine--glycine ligase
425	 32.00	0	426346..426795	+	149	78776626	-	Suden_0425	-	RDD protein
426	 31.66	0	426788..429004	+	738	78776627	-	Suden_0426	-	organic solvent tolerance protein, putative
427	 34.09	0	429008..429670	+	220	78776628	-	Suden_0427	-	hypothetical protein
428	 36.43	0	429660..431825	+	721	78776629	-	Suden_0428	-	polynucleotide phosphorylase/polyadenylase
429	 40.63	+1	431999..432313	+	104	78776630	-	Suden_0429	-	F0F1 ATP synthase subunit C
430	 32.06	0	432652..433752	+	366	78776631	-	Suden_0430	-	hypothetical protein
431	 37.98	+1	433865..435349	-	494	78776632	-	Suden_0431	-	sulphate transporter
432	 38.98	+1	435360..435713	-	117	78776633	-	Suden_0432	-	cupin region
433	 39.29	+1	435773..436696	+	307	78776634	-	Suden_0433	-	cysteine synthase K/M/A
434	 30.50	-1	436689..437288	+	199	78776635	-	Suden_0434	-	hypothetical protein
435	 30.72	-1	437282..437740	+	152	78776636	-	Suden_0435	-	hypothetical protein
436	 32.67	0	437744..438646	-	300	78776637	-	Suden_0436	-	LysR family transcriptional regulator
437	 34.85	0	438775..440823	+	682	78776638	-	Suden_0437	-	UvrD/REP helicase
438	 34.79	0	440820..441641	+	273	78776639	truB	Suden_0438	-	tRNA pseudouridine synthase B
439	 28.14	-1	441635..441865	+	76	78776640	-	Suden_0439	-	carbon storage regulator, CsrA
440	 34.83	0	441872..442672	+	266	78776641	-	Suden_0440	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
441	 35.32	0	442672..443124	+	150	78776642	smpB	Suden_0441	-	SsrA-binding protein
442	 34.03	0	443124..443981	+	285	78776643	-	Suden_0442	-	peptidase M23B
443	 33.51	0	443994..444575	+	193	78776644	-	Suden_0443	-	TPR repeat-containing protein
444	 31.67	0	444572..445294	+	240	78776645	-	Suden_0444	-	hypothetical protein
445	 32.63	0	445332..446045	+	237	78776646	-	Suden_0445	-	hypothetical protein
446	 33.60	0	446087..447214	+	375	78776647	-	Suden_0446	-	3-deoxy-D-manno-octulosonic-acid transferase
447	 36.19	0	447226..447960	+	244	78776648	-	Suden_0447	-	pseudouridine synthase
448	 34.17	0	447986..448225	+	79	78776649	-	Suden_0448	-	excinuclease ABC subunit C
449	 33.99	0	448210..448665	+	151	78776650	-	Suden_0449	-	hypothetical protein
450	 35.57	0	448746..450089	+	447	78776651	-	Suden_0450	-	Signal recognition particle protein
451	 40.26	+1	450211..450441	+	76	78776652	rpsP	Suden_0451	-	30S ribosomal protein S16
452	 37.08	0	450444..450683	+	79	78776653	-	Suden_0452	-	hypothetical protein
453	 32.78	0	450664..451203	+	179	78776654	-	Suden_0453	-	16S rRNA processing protein RimM
454	 33.91	0	451203..451898	+	231	78776655	trmD	Suden_0454	-	tRNA (guanine-N(1)-)-methyltransferase
455	 36.67	0	452021..452380	+	119	78776656	rplS	Suden_0455	-	50S ribosomal protein L19
456	 34.06	0	458483..459169	-	228	78776657	aat	Suden_0456	-	leucyl/phenylalanyl-tRNA--protein transferase
457	 34.62	0	459166..461343	-	725	78776658	-	Suden_0457	-	AAA ATPase
458	 31.67	0	461343..461642	-	99	78776659	-	Suden_0458	-	ATP-dependent Clp protease adaptor protein ClpS
459	 35.76	0	461871..463106	-	411	78776660	-	Suden_0459	-	O-acetylhomoserine aminocarboxypropyltransferase
460	 34.54	0	463202..463864	+	220	78776661	-	Suden_0460	-	dethiobiotin synthase
461	 36.64	0	463972..464847	+	291	78776662	pyrB	Suden_0461	-	aspartate carbamoyltransferase catalytic subunit
462	 33.65	0	464837..465775	+	312	78776663	-	Suden_0462	-	para-aminobenzoate synthase component I
463	 30.11	-1	465791..467188	+	465	78776664	-	Suden_0463	-	histidine kinase
464	 36.60	0	467241..468221	+	326	78776665	-	Suden_0464	-	transaldolase
465	 36.13	0	468354..468890	+	178	78776666	-	Suden_0465	-	50S ribosomal protein L25/general stress protein Ctc
466	 34.77	0	468894..469448	+	184	78776667	-	Suden_0466	-	peptidyl-tRNA hydrolase
467	 31.30	0	469479..470558	+	359	78776668	-	Suden_0467	-	permease YjgP/YjgQ
468	 35.31	0	470650..471861	+	403	78776669	-	Suden_0468	-	diaminopimelate decarboxylase
469	 34.23	0	471863..472639	+	258	78776670	-	Suden_0469	-	HAD family hydrolase
470	 35.53	0	472636..473727	+	363	78776671	-	Suden_0470	-	chorismate mutase, gamma, beta and epsilon
471	 32.60	0	473717..474811	+	364	78776672	-	Suden_0471	-	histidinol-phosphate aminotransferase
472	 35.98	0	474830..476530	+	566	78776673	fliF	Suden_0472	-	flagellar MS-ring protein
473	 36.64	0	476549..477577	+	342	78776674	fliG	Suden_0473	-	flagellar motor switch protein G
474	 34.09	0	477579..478373	+	264	78776675	fliH	Suden_0474	-	flagellar assembly protein H
475	 37.56	0	478383..480203	+	606	78776676	-	Suden_0475	-	1-deoxy-D-xylulose-5-phosphate synthase
476	 34.02	0	480195..480917	-	240	78776677	-	Suden_0476	-	hypothetical protein
477	 36.85	0	480946..483051	+	701	78776678	-	Suden_0477	-	hypothetical protein
478	 35.68	0	483139..485865	+	908	78776679	-	Suden_0478	-	hypothetical protein
479	 31.86	0	486513..487328	+	271	78776680	-	Suden_0480	-	hypothetical protein
480	 38.99	+1	487420..488604	+	394	78776681	-	Suden_0481	-	aminotransferase, class I and II
481	 27.00	-2	488647..488883	+	78	78776682	-	Suden_0482	-	hypothetical protein
482	 34.97	0	488873..489301	+	142	78776683	-	Suden_0483	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
483	 33.62	0	489556..490248	+	230	78776684	-	Suden_0484	-	putative dUTPase
484	 35.79	0	490250..490819	+	189	78776685	-	Suden_0485	-	ABC transporter-related protein
485	 35.62	0	490809..491201	-	130	78776686	-	Suden_0486	-	camphor resistance CrcB protein
486	 34.91	0	491167..491865	-	232	78776687	-	Suden_0487	-	phospholipid/glycerol acyltransferase
487	 31.06	-1	491843..492988	-	381	78776688	-	Suden_0488	-	hypothetical protein
488	 35.85	0	492985..493659	-	224	78776689	-	Suden_0489	-	phosphoribosylformylglycinamidine synthase subunit I
489	 34.98	0	493656..493898	-	80	78776690	-	Suden_0490	-	phosphoribosylformylglycinamidine synthetase PurS
490	 32.91	0	493930..494643	-	237	78776691	-	Suden_0491	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
491	 35.38	0	494645..495964	-	439	78776692	-	Suden_0492	-	peptidase S41A, C-terminal protease
492	 36.96	0	496106..496546	+	146	78776693	-	Suden_0493	-	hemerythrin HHE cation binding region
493	 34.03	0	496559..497857	+	432	78776694	-	Suden_0494	-	hypothetical protein
494	 33.72	0	497860..498375	+	171	78776695	-	Suden_0495	-	shikimate kinase
495	 32.85	0	498368..498784	+	138	78776696	-	Suden_0496	-	hypothetical protein
496	 37.97	+1	498788..500080	+	430	78776697	-	Suden_0497	-	histidinol dehydrogenase
497	 37.87	+1	500272..500910	+	212	78776698	-	Suden_0498	-	4Fe-4S ferredoxin, iron-sulfur binding
498	 36.67	0	500910..501809	+	299	78776699	-	Suden_0499	-	polysulphide reductase, NrfD
499	 39.07	+1	501822..505205	+	1127	78776700	-	Suden_0500	-	twin-arginine translocation pathway signal
500	 29.70	-1	505253..505747	-	164	78776701	-	Suden_0501	-	putative thioredoxin
501	 33.12	0	505848..506324	+	158	78776702	-	Suden_0502	-	hypothetical protein
502	 35.09	0	506345..507994	-	549	78776703	-	Suden_0503	-	phosphate transporter
503	 34.80	0	508067..508612	-	181	78776704	-	Suden_0504	-	peptidylprolyl isomerase
504	 35.79	0	508751..509035	-	94	78776705	-	Suden_0505	-	histone-like DNA-binding protein
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.