IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
299	 38.71	+1	309354..309539	+	61	78776500	rpsN	Suden_0299	-	30S ribosomal protein S14
300	 34.09	0	309645..310040	+	131	78776501	rpsH	Suden_0300	-	30S ribosomal protein S8
301	 37.24	0	310050..310586	+	178	78776502	rplF	Suden_0301	-	50S ribosomal protein L6
302	 36.97	0	310600..310956	+	118	78776503	rplR	Suden_0302	-	50S ribosomal protein L18
303	 36.51	0	310965..311405	+	146	78776504	rpsE	Suden_0303	-	30S ribosomal protein S5
304	 38.35	+1	311409..311807	+	132	78776505	rplO	Suden_0304	-	50S ribosomal protein L15
305	 34.92	0	311810..313072	+	420	78776506	secY	Suden_0305	-	preprotein translocase subunit SecY
306	 37.68	0	313076..313834	+	252	78776507	-	Suden_0306	-	methionine aminopeptidase
307	 33.79	0	313851..314069	+	72	78776508	infA	Suden_0307	-	translation initiation factor IF-1
308	 29.00	-1	314103..314840	-	245	78776509	-	Suden_0308	-	rhodanese-like protein
309	 30.03	-1	314848..315150	-	100	78776510	-	Suden_0309	-	chorismate mutase
310	 29.26	-1	315204..315890	-	228	78776511	-	Suden_0310	-	phospholipid/glycerol acyltransferase
311	 29.95	-1	315900..316106	-	68	78776512	-	Suden_0311	-	hypothetical protein
312	 34.75	0	316108..316956	-	282	78776513	-	Suden_0312	-	hypothetical protein
313	 33.89	0	317024..318277	-	417	78776514	-	Suden_0313	-	arsenical pump membrane protein
314	 33.08	0	318277..318675	-	132	78776515	-	Suden_0314	-	arsenate reductase
315	 29.49	-1	318668..318979	-	103	78776516	-	Suden_0315	-	ArsR family transcriptional regulator
316	 30.78	-1	319119..320528	-	469	78776517	-	Suden_0316	-	histidine kinase
317	 35.11	0	320521..321195	-	224	78776518	-	Suden_0317	-	two component transcriptional regulator
318	 32.78	0	321199..321558	-	119	78776519	-	Suden_0318	-	diacylglycerol kinase
319	 34.31	0	321555..323495	-	646	78776520	-	Suden_0319	-	sulfatase
320	 32.66	0	323665..325587	+	640	78776521	-	Suden_0320	-	sulfatase
321	 31.28	0	325577..326257	+	226	78776522	-	Suden_0321	-	PAP2 superfamily protein
322	 33.91	0	326313..326657	+	114	78776523	-	Suden_0322	-	hypothetical protein
323	 31.58	0	326933..327046	+	37	78776524	rpmJ	Suden_0323	-	50S ribosomal protein L36
324	 39.94	+1	327049..327411	+	120	78776525	rpsM	Suden_0324	-	30S ribosomal protein S13
325	 39.44	+1	327422..327814	+	130	78776526	-	Suden_0325	-	30S ribosomal protein S11
326	 38.60	+1	327826..328452	+	208	78776527	rpsD	Suden_0326	-	30S ribosomal protein S4
327	 33.23	0	328481..329473	+	330	78776528	-	Suden_0327	-	DNA-directed RNA polymerase subunit alpha
328	 37.04	0	329494..329844	+	116	78776529	rplQ	Suden_0328	-	50S ribosomal protein L17
329	 33.01	0	329976..331208	+	410	78776530	-	Suden_0329	-	oxidoreductase like protein
330	 32.97	0	331292..331567	+	91	78776531	-	Suden_0330	-	nitrogen-fixing NifU-like protein
331	 33.67	0	331584..332174	+	196	78776532	-	Suden_0331	-	hypothetical protein
332	 33.03	0	332164..333465	+	433	78776533	murE	Suden_0332	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
333	 40.27	+1	333557..333931	+	124	78776534	-	Suden_0333	-	ferredoxin, 2Fe-2S
334	 31.97	0	333933..334298	+	121	78776535	-	Suden_0334	-	aspartate alpha-decarboxylase
335	 37.86	+1	334303..334611	+	102	78776536	-	Suden_0335	-	hypothetical protein
336	 30.99	-1	334613..335593	+	326	78776537	-	Suden_0336	-	PDZ/DHR/GLGF
337	 37.10	0	335606..336454	+	282	78776538	-	Suden_0337	-	polyprenyl synthetase
338	 38.70	+1	336472..338391	+	639	78776539	-	Suden_0338	-	transketolase
339	 32.14	0	338582..338833	+	83	78776540	-	Suden_0339	-	hypothetical protein
340	 33.93	0	338886..339560	-	224	78776541	-	Suden_0340	-	DNA-3-methyladenine glycosylase III
341	 32.34	0	339557..340465	-	302	78776542	-	Suden_0341	-	auxin efflux carrier
342	 33.02	0	340518..340838	+	106	78776543	-	Suden_0342	-	thioredoxin-like
343	 31.47	0	340842..341591	-	249	78776544	-	Suden_0343	-	tRNA/rRNA methyltransferase (SpoU)
344	 28.79	-1	341641..342366	-	241	78776545	-	Suden_0344	-	hypothetical protein
345	 40.67	+1	343130..344329	+	399	78776546	-	Suden_0345	-	elongation factor Tu
346	 28.76	-1	344373..344525	+	50	78776547	-	Suden_0346	-	ribosomal protein L33
347	 28.33	-1	344721..344900	+	59	78776548	secE	Suden_0347	-	preprotein translocase subunit SecE
348	 32.78	0	344910..345449	+	179	78776549	nusG	Suden_0348	-	transcription antitermination protein NusG
349	 34.74	0	345614..346039	+	141	78776550	-	Suden_0349	-	ribosomal protein L11
350	 35.35	0	346110..346802	+	230	78776551	rplA	Suden_0350	-	50S ribosomal protein L1
351	 35.21	0	346955..347434	+	159	78776552	rplJ	Suden_0351	-	50S ribosomal protein L10
352	 36.04	0	347494..347862	+	122	78776553	rplL	Suden_0352	-	50S ribosomal protein L7/L12
353	 35.79	0	348090..352235	+	1381	78776554	rpoB	Suden_0353	-	DNA-directed RNA polymerase subunit beta
354	 36.17	0	352228..356739	+	1503	78776555	-	Suden_0354	-	DNA-directed RNA polymerase, subunit beta-prime
355	 37.53	0	356938..357318	+	126	78776556	rpsL	Suden_0355	-	30S ribosomal protein S12
356	 36.32	0	357420..357887	+	155	78776557	-	Suden_0356	-	30S ribosomal protein S7
357	 39.17	+1	357900..359990	+	696	78776558	-	Suden_0357	-	elongation factor G
358	 33.19	0	360339..361052	-	237	78776559	-	Suden_0358	-	arginyl-tRNA-protein transferase
359	 33.62	0	361094..361438	+	114	78776560	-	Suden_0359	-	hypothetical protein
360	 36.16	0	361416..362513	-	365	78776561	prfB	Suden_0360	-	peptide chain release factor 2
361	 36.37	0	362567..363388	+	273	78776562	panC	Suden_0361	-	pantoate--beta-alanine ligase
362	 34.62	0	363335..365122	-	595	78776563	-	Suden_0362	-	peptidoglycan glycosyltransferase
363	 38.67	+1	365154..365453	-	99	78776564	fliE	Suden_0363	-	flagellar hook-basal body protein FliE
364	 37.17	0	365469..365963	-	164	78776565	flgC	Suden_0364	-	flagellar basal body rod protein FlgC
365	 35.42	0	365974..366405	-	143	78776566	flgB	Suden_0365	-	flagellar basal body rod protein FlgB
366	 34.84	0	366558..366956	+	132	78776567	-	Suden_0366	-	N-terminal methylation
367	 34.25	0	367064..367501	+	145	78776568	-	Suden_0367	-	N-terminal methylation
368	 36.86	0	367533..369377	+	614	78776569	-	Suden_0368	-	primosome assembly protein PriA
369	 35.79	0	369361..369930	-	189	78776570	-	Suden_0369	-	nucleoside diphosphate pyrophosphatase
370	 33.66	0	369899..371107	-	402	78776571	-	Suden_0370	-	peptidase M23B
371	 34.20	0	371221..372027	+	268	78776572	-	Suden_0371	-	hypothetical protein
372	 37.30	0	372031..373416	+	461	78776573	-	Suden_0372	-	FAD linked oxidase-like
373	 28.18	-1	373423..374256	+	277	78776574	-	Suden_0373	-	ribonuclease BN
374	 33.89	0	374203..375465	-	420	78776575	-	Suden_0374	-	ComEC/Rec2-related protein
375	 36.85	0	375468..376919	-	483	78776576	-	Suden_0375	-	replicative DNA helicase
376	 39.28	+1	376919..377977	-	352	78776577	ispG	Suden_0376	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
377	 34.84	0	378139..380124	-	661	78776578	-	Suden_0377	-	TonB-dependent receptor
378	 34.04	0	380345..381340	-	331	78776579	-	Suden_0378	-	peptidyl-arginine deiminase
379	 36.97	0	381357..382373	+	338	78776580	alr	Suden_0379	-	alanine racemase
380	 30.70	-1	382370..384340	-	656	78776581	-	Suden_0380	-	diguanylate cyclase/phosphodiesterase
381	 33.84	0	384420..384812	-	130	78776582	-	Suden_0381	-	hypothetical protein
382	 29.78	-1	384809..385033	-	74	78776583	-	Suden_0382	-	hypothetical protein
383	 33.68	0	385030..385611	-	193	78776584	gidB	Suden_0383	-	glucose-inhibited division protein B
384	 37.94	+1	385645..386208	-	187	78776585	ribA	Suden_0384	-	GTP cyclohydrolase II
385	 38.68	+1	386282..387253	+	323	78776586	-	Suden_0385	-	delta-aminolevulinic acid dehydratase
386	 39.08	+1	387342..388280	+	312	78776587	-	Suden_0386	-	ornithine carbamoyltransferase
387	 34.12	0	388310..388564	-	84	78776588	-	Suden_0387	-	hypothetical protein
388	 38.10	+1	389163..389792	-	209	78776589	-	Suden_0388	-	hypothetical protein
389	 35.00	0	389848..390807	-	319	78776590	-	Suden_0389	-	tryptophanyl-tRNA synthetase
390	 33.33	0	390950..391279	+	109	78776591	-	Suden_0390	-	putative sigma 54 modulation protein/ribosomal protein S30EA
391	 34.52	0	391281..391703	+	140	78776592	-	Suden_0391	-	hypothetical protein
392	 36.03	0	391778..393262	-	494	78776593	engA	Suden_0392	-	GTP-binding protein EngA
393	 33.33	0	393323..394012	-	229	78776594	-	Suden_0393	-	hypothetical protein
394	 37.82	+1	394009..394587	-	192	78776595	-	Suden_0394	-	hypothetical protein
395	 31.81	0	394727..395185	+	152	78776596	-	Suden_0395	-	phosphoribosyltransferase
396	 36.57	0	395175..395483	-	102	78776597	-	Suden_0396	-	C-type cytochrome, putative
397	 33.47	0	395541..396293	-	250	78776598	-	Suden_0397	-	heat shock protein DnaJ-like
398	 30.68	-1	396369..397160	-	263	78776599	-	Suden_0398	-	hypothetical protein
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.