IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
169	 38.89	+1	169779..170624	-	281	78776370	-	Suden_0169	-	biotin synthase
170	 34.67	0	170621..171142	-	173	78776371	-	Suden_0170	-	hypothetical protein
171	 39.07	+1	171145..173376	-	743	78776372	-	Suden_0171	-	DNA topoisomerase I
172	 37.49	0	173585..174763	+	392	78776373	-	Suden_0172	-	flagellin-like
173	 37.74	0	174976..176154	+	392	78776374	-	Suden_0173	-	flagellin-like
174	 29.56	-1	176198..178186	-	662	78776375	-	Suden_0174	-	hypothetical protein
175	 32.34	0	178232..178936	-	234	78776376	-	Suden_0175	-	nucleotidyl transferase
176	 34.33	0	178933..180342	-	469	78776377	-	Suden_0176	-	cytidyltransferase-related
177	 35.84	0	180351..181469	-	372	78776378	-	Suden_0177	-	radical SAM family protein
178	 28.33	-1	181447..181746	-	99	78776379	-	Suden_0178	-	hypothetical protein
179	 35.15	0	181752..182741	-	329	78776380	-	Suden_0179	-	NAD-dependent epimerase/dehydratase
180	 33.54	0	182741..183229	-	162	78776381	-	Suden_0180	-	transketolase, central region
181	 35.09	0	183222..184019	-	265	78776382	-	Suden_0181	-	transketolase subunit A
182	 32.25	0	184031..185140	-	369	78776383	-	Suden_0182	-	radical SAM family protein
183	 30.72	-1	185118..186533	-	471	78776384	-	Suden_0183	-	hypothetical protein
184	 33.15	0	186598..187152	+	184	78776385	-	Suden_0184	-	sugar isomerase (SIS)
185	 33.14	0	187149..188201	-	350	78776386	-	Suden_0185	-	hypothetical protein
186	 33.33	0	188202..189953	-	583	78776387	-	Suden_0186	-	asparagine synthase, glutamine-hydrolyzing
187	 32.98	0	189941..191071	-	376	78776388	-	Suden_0187	-	glycosyl transferase, group 1
188	 31.31	0	191250..192089	+	279	78776389	-	Suden_0188	-	radical SAM family protein
189	 28.26	-1	192095..192922	+	275	78776390	-	Suden_0189	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
190	 34.77	0	192919..194100	+	393	78776391	-	Suden_0190	-	DegT/DnrJ/EryC1/StrS aminotransferase
191	 32.15	0	194070..195164	-	364	78776392	-	Suden_0191	-	glycosyl transferase, group 1
192	 29.89	-1	195165..195890	-	241	78776393	-	Suden_0192	-	hypothetical protein
193	 27.40	-2	195874..196968	-	364	78776394	-	Suden_0193	-	glycosyl transferase, group 1
194	 31.69	0	196965..197879	-	304	78776395	-	Suden_0194	-	hypothetical protein
195	 27.21	-2	197882..198910	-	342	78776396	-	Suden_0195	-	radical SAM family protein
196	 27.06	-2	198900..200429	-	509	78776397	-	Suden_0196	-	hypothetical protein
197	 27.72	-2	200430..201533	-	367	78776398	-	Suden_0197	-	radical SAM family protein
198	 26.72	-2	201533..202288	-	251	78776399	-	Suden_0198	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
199	 27.17	-2	202292..203314	-	340	78776400	-	Suden_0199	-	hypothetical protein
200	 33.23	0	203307..205274	-	655	78776401	-	Suden_0200	-	asparagine synthase, glutamine-hydrolyzing
201	 30.07	-1	205276..207390	-	704	78776402	-	Suden_0201	-	hypothetical protein
202	 34.56	0	207399..208787	-	462	78776403	-	Suden_0202	-	flagellar hook-associated protein 2-like
203	 35.34	0	208925..209323	+	132	78776404	fliS	Suden_0203	-	flagellar protein FliS
204	 27.84	-2	209324..209578	+	84	78776405	-	Suden_0204	-	hypothetical protein
205	 31.17	-1	209852..210082	-	76	78776406	-	Suden_0205	-	hypothetical protein
206	 32.81	0	210149..210340	+	63	78776407	-	Suden_0206	-	ribosomal protein L35
207	 39.22	+1	210448..210804	+	118	78776408	rplT	Suden_0207	-	50S ribosomal protein L20
208	 30.74	-1	210856..212550	-	564	78776409	-	Suden_0208	-	response regulator receiver domain-containing protein
209	 34.75	0	212550..214526	-	658	78776410	-	Suden_0209	-	methyl-accepting chemotaxis sensory transducer
210	 31.27	0	214526..214816	-	96	78776411	-	Suden_0210	-	hypothetical protein
211	 38.66	+1	214898..216079	-	393	78776412	-	Suden_0211	-	recombination factor protein RarA
212	 34.40	0	216083..217021	-	312	78776413	-	Suden_0212	-	pseudouridine synthase, Rsu
213	 38.84	+1	217018..217980	-	320	78776414	-	Suden_0213	-	KpsF/GutQ
214	 38.25	+1	218027..219043	-	338	78776415	-	Suden_0214	-	cytochrome-c peroxidase
215	 30.75	-1	219227..219961	+	244	78776416	-	Suden_0215	-	hypothetical protein
216	 38.39	+1	219964..221328	+	454	78776417	-	Suden_0216	-	hypothetical protein
217	 40.13	+1	221374..222153	+	259	78776418	thiG	Suden_0217	-	thiazole synthase
218	 33.44	0	222150..223064	-	304	78776419	-	Suden_0218	-	diguanylate cyclase
219	 35.26	0	223061..227419	-	1452	78776420	-	Suden_0219	-	multi-sensor hybrid histidine kinase
220	 32.16	0	227596..229215	-	539	78776421	-	Suden_0220	-	diguanylate cyclase
221	 33.70	0	229251..229526	-	91	78776422	-	Suden_0221	-	hypothetical protein
222	 37.21	0	229523..230968	-	481	78776423	-	Suden_0222	-	Sodium:alanine symporter
223	 23.98	-2	233117..234271	-	384	78776424	-	Suden_0223	-	hypothetical protein
224	 31.38	0	235156..236025	+	289	78776425	-	Suden_0224	-	hypothetical protein
225	 36.74	0	236216..236479	-	87	78776426	-	Suden_0225	-	hypothetical protein
226	 33.33	0	236707..236982	+	91	78776427	-	Suden_0226	-	hypothetical protein
227	 38.11	+1	236979..238109	-	376	78776428	-	Suden_0227	-	filamentation induced by cAMP protein Fic
228	 36.71	0	238230..238643	+	137	78776429	-	Suden_0228	-	hypothetical protein
229	 37.75	+1	238651..239148	+	165	78776430	-	Suden_0229	-	hypothetical protein
230	 38.30	+1	239224..239646	+	140	78776431	-	Suden_0230	-	hypothetical protein
231	 33.33	0	239906..240190	+	94	78776432	-	Suden_0231	-	hypothetical protein
232	 34.44	0	240196..240375	+	59	78776433	-	Suden_0232	-	hypothetical protein
233	 29.27	-1	240410..240655	+	81	78776434	-	Suden_0233	-	hypothetical protein
234	 31.75	0	240717..240968	-	83	78776435	-	Suden_0234	-	XRE family transcriptional regulator
235	 37.78	+1	241091..241450	+	119	78776436	-	Suden_0235	-	hypothetical protein
236	 29.10	-1	241524..242681	+	385	78776437	-	Suden_0236	-	hypothetical protein
237	 35.67	0	243104..244984	+	626	78776438	-	Suden_0237	-	hypothetical protein
238	 31.05	-1	245096..246103	+	335	78776439	-	Suden_0238	-	hypothetical protein
239	 34.02	0	246116..247855	+	579	78776440	-	Suden_0239	-	hypothetical protein
240	 39.24	+1	247907..253171	+	1754	78776441	-	Suden_0240	-	putative DNA helicase
241	 32.63	0	253559..254692	-	377	78776442	-	Suden_0241	-	Phage integrase
242	 32.13	0	254763..256343	-	526	78776443	-	Suden_0242	-	HipA-like-like
243	 40.27	+1	257213..259519	-	768	78776444	-	Suden_0243	-	hemolysin-type calcium-binding region
244	 39.85	+1	259538..260059	-	173	78776445	-	Suden_0244	-	hypothetical protein
245	 42.16	+2	260154..261116	-	320	78776446	-	Suden_0245	-	hypothetical protein
246	 43.48	+2	261123..262403	-	426	78776447	-	Suden_0246	-	hypothetical protein
247	 32.75	0	262552..263232	+	226	78776448	-	Suden_0247	-	two component transcriptional regulator
248	 35.65	0	263206..266403	-	1065	78776449	-	Suden_0248	-	histidine kinase
249	 29.55	-1	266655..267632	-	325	78776450	-	Suden_0249	-	hypothetical protein
250	 30.21	-1	267668..268468	-	266	78776451	-	Suden_0250	-	hypothetical protein
251	 34.41	0	268646..269110	-	154	78776452	-	Suden_0251	-	hypothetical protein
252	 32.57	0	269104..269754	-	216	78776453	-	Suden_0252	-	hypothetical protein
253	 37.39	0	269860..270081	+	73	78776454	-	Suden_0253	-	thiamine S
254	 39.27	+1	270085..270522	+	145	78776455	-	Suden_0254	-	molybdopterin converting factor, subunit 2
255	 38.86	+1	270519..271730	+	403	78776456	-	Suden_0255	-	molybdopterin binding domain-containing protein
256	 32.90	0	271797..272261	+	154	78776457	-	Suden_0256	-	hypothetical protein
257	 31.60	0	272280..273374	+	364	78776458	-	Suden_0257	-	hypothetical protein
258	 33.18	0	273371..274024	+	217	78776459	-	Suden_0258	-	two component transcriptional regulator
259	 30.60	-1	274014..275183	+	389	78776460	-	Suden_0259	-	histidine kinase
260	 34.67	0	275274..275798	+	174	78776461	-	Suden_0260	-	monoheme cytochrome SoxX
261	 37.61	0	275815..276282	+	155	78776462	-	Suden_0261	-	thiosulfate-binding protein SoxY
262	 33.63	0	276335..276670	+	111	78776463	-	Suden_0262	-	sulfur compound chelating protein SoxZ
263	 38.52	+1	276674..277444	+	256	78776464	-	Suden_0263	-	diheme cytochrome SoxA
264	 35.77	0	277455..279218	+	587	78776465	-	Suden_0264	-	sulfate thiol esterase SoxB
265	 37.65	0	279249..280730	+	493	78776466	-	Suden_0265	-	hypothetical protein
266	 28.31	-1	280816..281193	+	125	78776467	-	Suden_0266	-	hypothetical protein
267	 33.33	0	281195..281629	+	144	78776468	-	Suden_0267	-	hypothetical protein
268	 34.66	0	281651..282556	+	301	78776469	-	Suden_0268	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.