IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1971	 36.77	0	2060484..2061704	-	406	78778173	-	Suden_1979	-	major facilitator transporter
1972	 35.56	0	2061697..2062593	-	298	78778174	-	Suden_1980	-	glycosyl transferase family protein
1973	 34.07	0	2062765..2063169	-	134	78778175	-	Suden_1981	-	hypothetical protein
1974	 32.72	0	2063691..2064017	+	108	78778176	-	Suden_1982	-	hypothetical protein
1975	 39.01	+1	2064057..2064743	+	228	78778177	-	Suden_1983	-	nitric-oxide reductase subunit NorC
1976	 39.23	+1	2064733..2066157	+	474	78778178	-	Suden_1984	-	nitric-oxide reductase subunit NorB
1977	 38.21	+1	2066434..2068074	+	546	78778179	-	Suden_1985	-	nitrite reductase NirS
1978	 32.35	0	2068264..2068569	+	101	78778180	-	Suden_1986	-	cytochrome c, class I
1979	 35.92	0	2068570..2069691	+	373	78778181	-	Suden_1987	-	radical SAM family protein
1980	 32.37	0	2069691..2070827	+	378	78778182	-	Suden_1988	-	nitrite reductase NirF
1981	 38.60	+1	2070827..2071567	+	246	78778183	-	Suden_1989	-	uroporphyrinogen-III C-methyltransferase
1982	 31.50	0	2071560..2073086	+	508	78778184	-	Suden_1990	-	histidine kinase
1983	 33.77	0	2073076..2073765	+	229	78778185	-	Suden_1991	-	two component transcriptional regulator
1984	 35.04	0	2073762..2074463	-	233	78778186	-	Suden_1992	-	Sel1 repeat-containing protein
1985	 36.04	0	2074536..2075753	-	405	78778187	-	Suden_1993	-	Sodium:dicarboxylate symporter
1986	 35.06	0	2075767..2077095	-	442	78778188	-	Suden_1994	-	divalent cation transporter
1987	 32.51	0	2077234..2077719	-	161	78778189	-	Suden_1995	-	hypothetical protein
1988	 35.19	0	2077802..2078395	+	197	78778190	-	Suden_1996	-	putative lipoprotein
1989	 35.12	0	2078454..2078900	+	148	78778191	-	Suden_1997	-	hypothetical protein
1990	 35.16	0	2078986..2080788	+	600	78778192	-	Suden_1998	-	hypothetical protein
1991	 30.32	-1	2080795..2081490	-	231	78778193	-	Suden_1999	-	hypothetical protein
1992	 32.26	0	2081534..2081812	-	92	78778194	-	Suden_2000	-	hypothetical protein
1993	 39.42	+1	2081821..2083086	-	421	78778195	eno	Suden_2001	-	phosphopyruvate hydratase
1994	 39.21	+1	2083144..2084181	-	345	78778196	recA	Suden_2002	-	recombinase A
1995	 32.17	0	2084383..2086695	+	770	78778197	-	Suden_2003	-	diguanylate cyclase/phosphodiesterase
1996	 37.62	0	2086761..2087624	+	287	78778198	-	Suden_2004	-	hypothetical protein
1997	 34.46	0	2087624..2087890	+	88	78778199	fliQ	Suden_2005	-	flagellar biosynthesis protein FliQ
1998	 33.83	0	2087890..2088702	+	270	78778200	murB	Suden_2006	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1999	 37.13	0	2088725..2089699	-	324	78778201	-	Suden_2007	-	nitrogen-fixing NifU-like-like
2000	 38.93	+1	2089846..2091060	-	404	78778202	-	Suden_2008	-	aminotransferase, class V
2001	 29.96	-1	2091222..2091725	+	167	78778203	-	Suden_2009	-	hypothetical protein
2002	 37.85	+1	2091722..2092408	-	228	78778204	-	Suden_2010	-	pseudouridine synthase, Rsu
2003	 38.03	+1	2092511..2095576	-	1021	78778205	-	Suden_2011	-	heavy metal efflux pump CzcA
2004	 35.32	0	2095569..2096627	-	352	78778206	-	Suden_2012	-	secretion protein HlyD
2005	 33.50	0	2096624..2097805	-	393	78778207	-	Suden_2013	-	hypothetical protein
2006	 36.00	0	2097845..2098144	-	99	78778208	-	Suden_2014	-	hypothetical protein
2007	 29.20	-1	2098226..2098975	-	249	78778209	-	Suden_2015	-	diguanylate cyclase
2008	 30.37	-1	2098994..2099836	-	280	78778210	-	Suden_2016	-	hypothetical protein
2009	 39.52	+1	2099986..2101245	+	419	78778211	-	Suden_2017	-	3-isopropylmalate dehydratase large subunit
2010	 35.53	0	2101331..2102377	+	348	78778212	-	Suden_2018	-	OmpA/MotB
2011	 31.79	0	2102377..2102958	+	193	78778213	-	Suden_2019	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2012	 37.37	0	2103030..2103500	+	156	78778214	moaC	Suden_2020	-	molybdenum cofactor biosynthesis protein C
2013	 33.70	0	2103481..2103750	+	89	78778215	-	Suden_2021	-	hypothetical protein
2014	 34.98	0	2103763..2104734	+	323	78778216	-	Suden_2022	-	hypothetical protein
2015	 38.53	+1	2104789..2105865	-	358	78778217	-	Suden_2023	-	chorismate synthase
2016	 38.33	+1	2105865..2106545	-	226	78778218	rnc	Suden_2024	-	ribonuclease III
2017	 37.50	0	2106542..2106973	-	143	78778219	rnhA	Suden_2025	-	ribonuclease H
2018	 31.33	0	2106948..2107994	-	348	78778220	-	Suden_2026	-	TPR repeat-containing protein
2019	 32.05	0	2107994..2108461	-	155	78778221	-	Suden_2027	-	hypothetical protein
2020	 39.35	+1	2108532..2109578	-	348	78778222	-	Suden_2028	-	hypothetical protein
2021	 33.56	0	2109682..2113167	-	1161	78778223	-	Suden_2029	-	hypothetical protein
2022	 34.03	0	2113224..2114657	-	477	78778224	-	Suden_2030	-	4Fe-4S ferredoxin, iron-sulfur binding
2023	 40.29	+1	2114857..2118348	+	1163	78778225	-	Suden_2031	-	5-methyltetrahydrofolate--homocysteine methyltransferase
2024	 34.37	0	2118452..2119030	+	192	78778226	-	Suden_2032	-	YceI
2025	 36.44	0	2119072..2120583	-	503	78778227	-	Suden_2033	-	Mg chelatase-related protein
2026	 33.71	0	2120659..2121195	-	178	78778228	def	Suden_2034	-	peptide deformylase
2027	 33.71	0	2121211..2122260	-	349	78778229	-	Suden_2035	-	diguanylate cyclase
2028	 38.41	+1	2122280..2122870	-	196	78778230	clpP	Suden_2036	-	ATP-dependent Clp protease proteolytic subunit
2029	 33.64	0	2122875..2124176	-	433	78778231	tig	Suden_2037	-	trigger factor
2030	 32.90	0	2124348..2124809	-	153	78778232	lspA	Suden_2038	-	lipoprotein signal peptidase
2031	 37.21	0	2124802..2126142	-	446	78778233	-	Suden_2039	-	phosphoglucosamine mutase
2032	 34.47	0	2126291..2127526	+	411	78778234	-	Suden_2040	-	Outer membrane efflux protein
2033	 38.10	+1	2127523..2128719	+	398	78778235	-	Suden_2041	-	secretion protein HlyD
2034	 40.79	+1	2128719..2129429	+	236	78778236	-	Suden_2042	-	ABC transporter-related protein
2035	 39.44	+1	2129429..2130640	+	403	78778237	-	Suden_2043	-	hypothetical protein
2036	 37.93	+1	2130768..2131028	+	86	78778238	rpsT	Suden_2044	-	30S ribosomal protein S20
2037	 38.67	+1	2131043..2132110	+	355	78778239	prfA	Suden_2045	-	peptide chain release factor 1
2038	 35.53	0	2132107..2132880	-	257	78778240	dapF	Suden_2046	-	diaminopimelate epimerase
2039	 35.82	0	2132877..2133479	-	200	78778241	coaE	Suden_2047	-	dephospho-CoA kinase
2040	 34.25	0	2133479..2134024	-	181	78778242	-	Suden_2048	-	spermidine synthase-like
2041	 35.37	0	2134184..2135509	+	441	78778243	-	Suden_2049	-	twin-arginine translocation pathway signal
2042	 39.36	+1	2135870..2136865	+	331	78778244	-	Suden_2050	-	phosphoribosylaminoimidazole synthetase
2043	 35.45	0	2136963..2137811	-	282	78778245	-	Suden_2051	-	hypothetical protein
2044	 33.53	0	2137808..2138821	-	337	78778246	-	Suden_2052	-	hypothetical protein
2045	 36.82	0	2138986..2140188	-	400	78778247	-	Suden_2053	-	aromatic hydrocarbon degradation protein
2046	 33.76	0	2146719..2147417	+	232	78778248	-	Suden_2054	-	hypothetical protein
2047	 31.36	0	2147410..2147814	+	134	78778249	-	Suden_2055	-	hypothetical protein
2048	 34.41	0	2147928..2148950	-	340	78778250	-	Suden_2056	-	Beta-lactamase-like
2049	 34.01	0	2149064..2149357	-	97	78778251	-	Suden_2057	-	sulfur oxidation protein SoxZ
2050	 38.41	+1	2149411..2149863	-	150	78778252	-	Suden_2058	-	sulfur oxidation protein
2051	 38.90	+1	2149905..2151053	-	382	78778253	-	Suden_2059	-	diheme cytochrome c SoxD
2052	 38.12	+1	2151066..2152403	-	445	78778254	-	Suden_2060	-	twin-arginine translocation pathway signal
2053	 32.44	0	2152685..2153131	+	148	78778255	-	Suden_2061	-	hypothetical protein
2054	 31.75	0	2153113..2153805	-	230	78778256	-	Suden_2062	-	putative methyl transferase
2055	 36.59	0	2153802..2154599	-	265	78778257	-	Suden_2063	-	hypothetical protein
2056	 35.56	0	2154601..2155365	-	254	78778258	-	Suden_2064	-	ABC transporter-related protein
2057	 34.43	0	2155362..2156276	-	304	78778259	-	Suden_2065	-	periplasmic solute binding protein
2058	 38.31	+1	2156385..2156786	+	133	78778260	secG	Suden_2066	-	preprotein translocase subunit SecG
2059	 32.44	0	2156880..2157437	+	185	78778261	frr	Suden_2067	-	ribosome recycling factor
2060	 41.87	+2	2157442..2158050	+	202	78778262	pyrE	Suden_2068	-	orotate phosphoribosyltransferase
2061	 34.26	0	2158105..2159181	+	358	78778263	-	Suden_2069	-	Beta-N-acetylhexosaminidase
2062	 37.21	0	2159181..2160650	+	489	78778264	-	Suden_2070	-	Na+/solute symporter
2063	 38.21	+1	2160643..2161749	+	368	78778265	anmK	Suden_2071	-	anhydro-N-acetylmuramic acid kinase
2064	 32.59	0	2161742..2162680	+	312	78778266	-	Suden_2072	-	aminoglycoside phosphotransferase
2065	 37.56	0	2162677..2163339	+	220	78778267	-	Suden_2073	-	nucleotidyl transferase
2066	 32.62	0	2163545..2164531	+	328	78778268	-	Suden_2074	-	membrane-bound lytic murein transglycosylase B-like
2067	 39.51	+1	2164545..2164787	-	80	78778269	-	Suden_2075	-	iron oxidase precursor oxidoreductase protein
2068	 35.72	0	2164876..2165712	-	278	78778270	-	Suden_2076	-	aldose 1-epimerase
2069	 38.88	+1	2165699..2166979	-	426	78778271	-	Suden_2077	-	glucose/galactose transporter
2070	 34.66	0	2166969..2167799	-	276	78778272	-	Suden_2078	-	HAD superfamily hydrolase
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.