IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1881	 36.76	0	1968587..1970017	+	476	78778083	-	Suden_1889	-	glutamine synthetase type I
1882	 37.13	0	1970163..1971821	+	552	78778084	-	Suden_1890	-	2-isopropylmalate synthase
1883	 34.99	0	1971961..1972383	+	140	78778085	-	Suden_1891	-	hypothetical protein
1884	 36.59	0	1972411..1974378	-	655	78778086	-	Suden_1892	-	penicillin-binding protein 1A
1885	 36.96	0	1974375..1975064	-	229	78778087	-	Suden_1893	-	ABC transporter-related protein
1886	 35.25	0	1975061..1976155	-	364	78778088	-	Suden_1894	-	aminotransferase, class I and II
1887	 30.28	-1	1976155..1977822	-	555	78778089	-	Suden_1895	-	diguanylate cyclase
1888	 34.61	0	1977957..1978505	-	182	78778090	-	Suden_1896	-	Maf-like protein
1889	 34.99	0	1978506..1978988	-	160	78778091	-	Suden_1897	-	hypothetical protein
1890	 39.08	+1	1978988..1981543	-	851	78778092	alaS	Suden_1898	-	alanyl-tRNA synthetase
1891	 39.05	+1	1981609..1983024	-	471	78778093	-	Suden_1899	-	aldehyde dehydrogenase
1892	 33.84	0	1983286..1983678	+	130	78778094	-	Suden_1900	-	hypothetical protein
1893	 35.76	0	1983675..1984004	-	109	78778095	-	Suden_1901	-	formate dehydrogenase H large subunit
1894	 37.14	0	1984004..1986079	-	691	78778096	-	Suden_1902	-	molybdopterin oxidoreductase
1895	 35.25	0	1986104..1986832	-	242	78778097	-	Suden_1903	-	Short-chain dehydrogenase/reductase SDR
1896	 36.26	0	1986839..1988101	-	420	78778098	-	Suden_1904	-	homoserine dehydrogenase
1897	 37.85	+1	1988140..1989357	-	405	78778099	-	Suden_1905	-	aspartate aminotransferase
1898	 30.68	-1	1989426..1990253	-	275	78778100	-	Suden_1906	-	hypothetical protein
1899	 31.40	0	1990247..1991179	-	310	78778101	-	Suden_1907	-	hypothetical protein
1900	 36.42	0	1991176..1991856	-	226	78778102	-	Suden_1908	-	RNA methyltransferase TrmH, group 3
1901	 35.78	0	1991895..1992710	-	271	78778103	-	Suden_1909	-	hypothetical protein
1902	 33.33	0	1992723..1992923	-	66	78778104	rpmE	Suden_1910	-	50S ribosomal protein L31
1903	 34.96	0	1993040..1993717	-	225	78778105	-	Suden_1911	-	hypothetical protein
1904	 35.61	0	1994018..1995379	+	453	78778106	-	Suden_1912	-	molybdopterin binding domain-containing protein
1905	 33.85	0	1995359..1995940	-	193	78778107	-	Suden_1913	-	6-pyruvoyl tetrahydrobiopterin synthase-like
1906	 34.98	0	1995940..1996605	-	221	78778108	-	Suden_1914	-	hypothetical protein
1907	 37.68	0	1996698..1997663	-	321	78778109	moaA	Suden_1915	-	molybdenum cofactor biosynthesis protein A
1908	 34.74	0	1997855..1998496	-	213	78778110	-	Suden_1916	-	hypothetical protein
1909	 35.93	0	1998655..1999926	-	423	78778111	-	Suden_1917	-	hypothetical protein
1910	 29.89	-1	2000251..2000715	+	154	78778112	-	Suden_1918	-	RDD protein
1911	 37.97	+1	2000957..2001904	-	315	78778113	-	Suden_1919	-	ubiquinol cytochrome c oxidoreductase, cytochrome C1 subunit
1912	 36.13	0	2001915..2003129	-	404	78778114	-	Suden_1920	-	cytochrome b/b6-like
1913	 42.77	+2	2003142..2003639	-	165	78778115	-	Suden_1921	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1914	 30.80	-1	2003726..2004592	-	288	78778116	-	Suden_1922	-	hypothetical protein
1915	 38.54	+1	2004614..2006494	-	626	78778117	-	Suden_1923	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1916	 35.51	0	2006674..2007777	+	367	78778118	-	Suden_1924	-	response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
1917	 31.97	0	2007774..2008139	+	121	78778119	-	Suden_1925	-	response regulator receiver domain-containing protein
1918	 30.09	-1	2008143..2010236	+	697	78778120	-	Suden_1926	-	PAS/PAC sensor signal transduction histidine kinase
1919	 32.65	0	2010238..2012565	+	775	78778121	-	Suden_1927	-	histidine kinase
1920	 34.74	0	2012565..2013347	+	260	78778122	-	Suden_1928	-	putative signal transduction protein
1921	 40.32	+1	2013408..2014094	+	228	78778123	-	Suden_1929	-	Sel1 repeat-containing protein
1922	 37.42	0	2014129..2014740	+	203	78778124	-	Suden_1930	-	riboflavin synthase subunit alpha
1923	 38.29	+1	2014740..2016515	+	591	78778125	-	Suden_1931	-	ATP-dependent DNA helicase RecQ
1924	 36.75	0	2016631..2018679	+	682	78778126	-	Suden_1932	-	methyl-accepting chemotaxis sensory transducer
1925	 34.51	0	2018685..2019449	-	254	78778127	-	Suden_1933	-	hypothetical protein
1926	 27.21	-2	2019511..2019804	-	97	78778128	-	Suden_1934	-	hypothetical protein
1927	 33.33	0	2019804..2020022	-	72	78778129	-	Suden_1935	-	hypothetical protein
1928	 36.20	0	2020163..2020651	-	162	78778130	-	Suden_1936	-	hypothetical protein
1929	 35.31	0	2020653..2020955	-	100	78778131	-	Suden_1937	-	hypothetical protein
1930	 40.08	+1	2020959..2021462	-	167	78778132	-	Suden_1938	-	S-ribosylhomocysteinase
1931	 37.97	+1	2021598..2022179	+	193	78778133	-	Suden_1939	-	CheB methylesterase
1932	 32.44	0	2022179..2022958	+	259	78778134	-	Suden_1940	-	MCP methyltransferase, CheR-type
1933	 32.10	0	2023036..2025621	+	861	78778135	-	Suden_1941	-	diguanylate cyclase/phosphodiesterase
1934	 26.96	-2	2025627..2025830	-	67	78778136	-	Suden_1942	-	hypothetical protein
1935	 33.85	0	2025827..2027581	-	584	78778137	-	Suden_1943	-	Na+/Pi-cotransporter
1936	 32.72	0	2027596..2028744	-	382	78778138	-	Suden_1944	-	Sodium/hydrogen exchanger
1937	 40.05	+1	2028819..2030054	-	411	78778139	-	Suden_1945	-	DEAD/DEAH box helicase-like
1938	 35.92	0	2030122..2030970	-	282	78778140	-	Suden_1946	-	AraC family transcriptional regulator
1939	 40.30	+1	2030982..2032244	-	420	78778141	-	Suden_1947	-	serine hydroxymethyltransferase
1940	 33.54	0	2032335..2032808	-	157	78778142	-	Suden_1948	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1941	 28.19	-1	2032937..2033461	+	174	78778143	-	Suden_1949	-	hypothetical protein
1942	 40.97	+1	2033479..2034369	-	296	78778144	-	Suden_1950	-	hypothetical protein
1943	 29.66	-1	2034646..2035053	+	135	78778145	-	Suden_1951	-	response regulator receiver domain-containing protein
1944	 42.95	+2	2035506..2040122	+	1538	78778146	-	Suden_1952	-	hypothetical protein
1945	 30.04	-1	2040361..2040603	+	80	78778147	-	Suden_1953	-	hypothetical protein
1946	 25.44	-2	2040967..2041194	+	75	78778148	-	Suden_1954	-	hypothetical protein
1947	 26.05	-2	2041199..2041459	+	86	78778149	-	Suden_1955	-	hypothetical protein
1948	 26.76	-2	2041787..2041999	-	70	78778150	-	Suden_1956	-	plasmid stabilization system protein
1949	 36.90	0	2042004..2042171	-	55	78778151	-	Suden_1957	-	hypothetical protein
1950	 25.93	-2	2042214..2042456	+	80	78778152	-	Suden_1958	-	hypothetical protein
1951	 30.95	-1	2042946..2043155	-	69	78778153	-	Suden_1959	-	hypothetical protein
1952	 37.95	+1	2043371..2043565	+	64	78778154	-	Suden_1960	-	hypothetical protein
1953	 31.86	0	2043600..2044073	-	157	78778155	-	Suden_1961	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1954	 33.80	0	2044312..2045601	+	429	78778156	-	Suden_1962	-	diguanylate cyclase
1955	 33.49	0	2045687..2046310	-	207	78778157	-	Suden_1963	-	DSBA oxidoreductase
1956	 35.22	0	2046524..2047000	+	158	78778158	-	Suden_1964	-	hypothetical protein
1957	 38.10	+1	2047069..2047278	+	69	78778159	-	Suden_1965	-	CopG-like DNA-binding
1958	 28.68	-1	2047268..2047525	+	85	78778160	-	Suden_1966	-	addiction module toxin, RelE/StbE
1959	 38.41	+1	2047708..2050506	-	932	78778161	-	Suden_1967	-	helicase-like
1960	 36.50	0	2050536..2051705	-	389	78778162	-	Suden_1968	-	UDP-glucose 6-dehydrogenase
1961	 29.50	-1	2051833..2052276	+	147	78778163	-	Suden_1969	-	hypothetical protein
1962	 38.74	+1	2052283..2054244	-	653	78778164	-	Suden_1970	-	short chain dehydrogenase
1963	 40.46	+1	2054249..2055328	-	359	78778165	mtnA	Suden_1971	-	methylthioribose-1-phosphate isomerase
1964	 34.15	0	2055318..2056538	-	406	78778166	mtnK	Suden_1972	-	methylthioribose kinase
1965	 36.21	0	2056835..2057530	-	231	78778167	-	Suden_1973	-	hypothetical protein
1966	 33.33	0	2057517..2057819	-	100	78778168	-	Suden_1974	-	hypothetical protein
1967	 33.09	0	2057974..2058381	-	135	78778169	-	Suden_1975	-	hypothetical protein
1968	 34.83	0	2058400..2059398	-	332	78778170	-	Suden_1976	-	AsnC family transcriptional regulator
1969	 33.69	0	2059540..2060106	+	188	78778171	-	Suden_1977	-	siroheme synthase CysG
1970	 32.81	0	2060107..2060487	+	126	78778172	-	Suden_1978	-	hypothetical protein
1971	 36.77	0	2060484..2061704	-	406	78778173	-	Suden_1979	-	major facilitator transporter
1972	 35.56	0	2061697..2062593	-	298	78778174	-	Suden_1980	-	glycosyl transferase family protein
1973	 34.07	0	2062765..2063169	-	134	78778175	-	Suden_1981	-	hypothetical protein
1974	 32.72	0	2063691..2064017	+	108	78778176	-	Suden_1982	-	hypothetical protein
1975	 39.01	+1	2064057..2064743	+	228	78778177	-	Suden_1983	-	nitric-oxide reductase subunit NorC
1976	 39.23	+1	2064733..2066157	+	474	78778178	-	Suden_1984	-	nitric-oxide reductase subunit NorB
1977	 38.21	+1	2066434..2068074	+	546	78778179	-	Suden_1985	-	nitrite reductase NirS
1978	 32.35	0	2068264..2068569	+	101	78778180	-	Suden_1986	-	cytochrome c, class I
1979	 35.92	0	2068570..2069691	+	373	78778181	-	Suden_1987	-	radical SAM family protein
1980	 32.37	0	2069691..2070827	+	378	78778182	-	Suden_1988	-	nitrite reductase NirF
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.