IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1316	 35.41	0	1389263..1390564	-	433	78777518	-	Suden_1320	-	Ste24 endopeptidase
1317	 36.88	0	1390622..1391383	+	253	78777519	-	Suden_1321	-	patatin
1318	 36.48	0	1391436..1391753	+	105	78777520	-	Suden_1322	-	hypothetical protein
1319	 39.39	+1	1391814..1393250	+	478	78777521	-	Suden_1323	-	catalase
1320	 31.96	0	1393331..1393621	-	96	78777522	-	Suden_1324	-	hypothetical protein
1321	 36.90	0	1393874..1395217	-	447	78777523	-	Suden_1325	-	Sodium/sulphate symporter
1322	 37.08	0	1395264..1396730	-	488	78777524	-	Suden_1326	-	Sodium/proline symporter
1323	 35.39	0	1396731..1400279	-	1182	78777525	-	Suden_1327	-	delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
1324	 31.09	-1	1400561..1402255	+	564	78777526	-	Suden_1328	-	diguanylate cyclase
1325	 36.02	0	1402363..1402734	+	123	78777527	-	Suden_1329	-	hypothetical protein
1326	 37.93	+1	1402740..1403630	-	296	78777528	gpsA	Suden_1330	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1327	 30.19	-1	1403623..1404321	-	232	78777529	-	Suden_1331	-	TrkA-N
1328	 29.99	-1	1404321..1405874	-	517	78777530	-	Suden_1332	-	TrkA-N:Ion transport protein
1329	 36.98	0	1405880..1407304	-	474	78777531	gatB	Suden_1333	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1330	 33.16	0	1407426..1408604	+	392	78777532	-	Suden_1334	-	hypothetical protein
1331	 29.04	-1	1408618..1409013	+	131	78777533	-	Suden_1335	-	hypothetical protein
1332	 31.59	0	1409000..1410319	+	439	78777534	-	Suden_1336	-	diguanylate cyclase
1333	 34.09	0	1410346..1410741	-	131	78777535	-	Suden_1337	-	hypothetical protein
1334	 28.79	-1	1410744..1411007	-	87	78777536	-	Suden_1338	-	hypothetical protein
1335	 36.74	0	1411019..1411693	-	224	78777537	-	Suden_1339	-	F0F1 ATP synthase subunit A
1336	 34.82	0	1411771..1412646	-	291	78777538	-	Suden_1340	-	pseudouridylate synthase
1337	 35.98	0	1412811..1413641	-	276	78777539	-	Suden_1341	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1338	 35.79	0	1413700..1415043	-	447	78777540	-	Suden_1342	-	divalent cation transporter
1339	 38.26	+1	1415164..1415874	-	236	78777541	-	Suden_1343	-	hemolysin A
1340	 38.23	+1	1415861..1417819	-	652	78777542	ligA	Suden_1344	-	NAD-dependent DNA ligase LigA
1341	 38.40	+1	1417954..1418901	+	315	78777543	-	Suden_1345	-	hypothetical protein
1342	 37.40	0	1418976..1419959	+	327	78777544	-	Suden_1346	-	putative sulfonate/nitrate transport system substrate-binding protein
1343	 39.97	+1	1419960..1420742	+	260	78777545	-	Suden_1347	-	binding-protein dependent transport system inner membrane protein
1344	 38.60	+1	1420730..1421470	+	246	78777546	-	Suden_1348	-	ABC transporter-related protein
1345	 38.85	+1	1421467..1422717	+	416	78777547	-	Suden_1349	-	NnrS
1346	 34.74	0	1422754..1423320	-	188	78777548	-	Suden_1350	-	type III restriction-modification enzyme, helicase subunit
1347	 29.70	-1	1423628..1425058	-	476	78777549	-	Suden_1351	-	hypothetical protein
1348	 29.63	-1	1425326..1425595	+	89	78777550	-	Suden_1352	-	XRE family transcriptional regulator
1349	 28.91	-1	1425777..1426070	+	97	78777551	-	Suden_1353	-	hypothetical protein
1350	 36.94	0	1426877..1428013	-	378	78777552	-	Suden_1355	-	site-specific DNA-methyltransferase (adenine-specific)
1351	 37.37	0	1428167..1428364	+	65	78777553	-	Suden_1356	-	hypothetical protein
1352	 30.00	-1	1428471..1428710	+	79	78777554	-	Suden_1357	-	hypothetical protein
1353	 31.31	0	1428731..1430902	-	723	78777555	-	Suden_1358	-	diguanylate cyclase/phosphodiesterase
1354	 37.98	+1	1430955..1432181	-	408	78777556	-	Suden_1359	-	multi anti extrusion protein MatE
1355	 33.69	0	1432268..1432549	-	93	78777557	-	Suden_1360	-	hypothetical protein
1356	 37.01	0	1432741..1433991	+	416	78777558	-	Suden_1361	-	Outer membrane efflux protein
1357	 36.39	0	1433988..1435133	+	381	78777559	-	Suden_1362	-	secretion protein HlyD
1358	 37.09	0	1435130..1436275	+	381	78777560	-	Suden_1363	-	hypothetical protein
1359	 38.66	+1	1436277..1436990	+	237	78777561	-	Suden_1364	-	ABC transporter-related protein
1360	 32.12	0	1437024..1437683	+	219	78777562	-	Suden_1365	-	two component transcriptional regulator
1361	 32.53	0	1437706..1438821	+	371	78777563	-	Suden_1366	-	histidine kinase
1362	 24.77	-2	1438815..1439141	+	108	78777564	-	Suden_1367	-	hypothetical protein
1363	 31.94	0	1439399..1439686	+	95	78777565	-	Suden_1368	-	hypothetical protein
1364	 35.98	0	1439699..1440679	+	326	78777566	-	Suden_1369	-	K+-dependent Na+/Ca+ exchanger related-protein
1365	 35.10	0	1440756..1441604	-	282	78777567	-	Suden_1370	-	hypothetical protein
1366	 33.17	0	1441627..1442835	-	402	78777568	-	Suden_1371	-	hypothetical protein
1367	 36.75	0	1442955..1443335	+	126	78777569	-	Suden_1372	-	flagellar protein FlaG protein
1368	 37.37	0	1443472..1444686	+	404	78777570	-	Suden_1373	-	argininosuccinate synthase
1369	 37.13	0	1444705..1445442	+	245	78777571	-	Suden_1374	-	rhodanese-like protein
1370	 32.89	0	1445454..1445900	+	148	78777572	rplI	Suden_1375	-	50S ribosomal protein L9
1371	 37.73	0	1445900..1446445	+	181	78777573	-	Suden_1376	-	ATP-dependent protease peptidase subunit
1372	 34.91	0	1446442..1447770	+	442	78777574	hslU	Suden_1377	-	ATP-dependent protease ATP-binding subunit
1373	 33.44	0	1447780..1448682	+	300	78777575	era	Suden_1378	-	GTP-binding protein Era
1374	 29.09	-1	1448679..1449644	+	321	78777576	-	Suden_1379	-	hypothetical protein
1375	 28.94	-1	1449657..1450952	+	431	78777577	-	Suden_1380	-	putative periplasmic protein
1376	 29.28	-1	1450964..1452517	+	517	78777578	-	Suden_1381	-	hypothetical protein
1377	 29.91	-1	1452514..1453155	+	213	78777579	-	Suden_1382	-	hypothetical protein
1378	 32.24	0	1453152..1453607	+	151	78777580	-	Suden_1383	-	hypothetical protein
1379	 33.57	0	1453618..1455309	+	563	78777581	-	Suden_1384	-	type II and III secretion system protein
1380	 28.70	-1	1455306..1456082	+	258	78777582	-	Suden_1385	-	hypothetical protein
1381	 27.04	-2	1456079..1456396	+	105	78777583	-	Suden_1386	-	hypothetical protein
1382	 33.45	0	1456405..1458138	+	577	78777584	-	Suden_1387	-	type II secretion system protein E
1383	 30.12	-1	1458138..1459382	+	414	78777585	-	Suden_1388	-	type II secretion system protein
1384	 33.76	0	1459410..1460120	-	236	78777586	-	Suden_1389	-	hypothetical protein
1385	 29.88	-1	1460218..1460709	+	163	78777587	-	Suden_1390	-	hypothetical protein
1386	 33.21	0	1460699..1461481	-	260	78777588	-	Suden_1391	-	hypothetical protein
1387	 37.11	0	1461521..1462234	-	237	78777589	-	Suden_1392	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1388	 36.42	0	1462393..1463331	-	312	78777590	-	Suden_1393	-	malonyl CoA-acyl carrier protein transacylase
1389	 28.13	-1	1463341..1464090	-	249	78777591	-	Suden_1394	-	Fis family transcriptional regulator
1390	 37.23	0	1464080..1464592	-	170	78777592	-	Suden_1395	-	peptidylprolyl isomerase, FKBP-type
1391	 31.08	-1	1464634..1465563	-	309	78777593	-	Suden_1396	-	TPR repeat-containing protein
1392	 36.91	0	1465567..1466097	-	176	78777594	-	Suden_1397	-	OmpA/MotB
1393	 29.35	-1	1466170..1467423	-	417	78777595	tolB	Suden_1398	-	translocation protein TolB
1394	 26.69	-2	1467427..1468194	-	255	78777596	-	Suden_1399	-	hypothetical protein
1395	 29.26	-1	1468187..1468579	-	130	78777597	-	Suden_1400	-	biopolymer transport protein ExbD/TolR
1396	 33.86	0	1468583..1469149	-	188	78777598	-	Suden_1401	-	MotA/TolQ/ExbB proton channel
1397	 38.68	+1	1469155..1469547	-	130	78777599	atpC	Suden_1402	-	F0F1 ATP synthase subunit epsilon
1398	 39.23	+1	1469564..1470970	-	468	78777600	-	Suden_1403	-	F0F1 ATP synthase subunit beta
1399	 33.11	0	1470970..1471857	-	295	78777601	-	Suden_1404	-	F0F1 ATP synthase subunit gamma
1400	 39.53	+1	1471867..1473384	-	505	78777602	-	Suden_1405	-	F0F1 ATP synthase subunit alpha
1401	 29.59	-1	1473408..1473941	-	177	78777603	-	Suden_1406	-	F0F1 ATP synthase subunit delta
1402	 34.71	0	1473941..1474450	-	169	78777604	-	Suden_1407	-	F0F1 ATP synthase subunit B
1403	 33.57	0	1474460..1474882	-	140	78777605	-	Suden_1408	-	F0F1 ATP synthase subunit B'
1404	 31.44	0	1475007..1475849	-	280	78777606	-	Suden_1409	-	ParB-like partition protein
1405	 33.08	0	1475846..1476631	-	261	78777607	-	Suden_1410	-	cobyrinic acid a,c-diamide synthase
1406	 30.35	-1	1476628..1477263	-	211	78777608	-	Suden_1411	-	biotin--protein ligase
1407	 35.09	0	1477244..1478152	-	302	78777609	fmt	Suden_1412	-	methionyl-tRNA formyltransferase
1408	 34.12	0	1478152..1478916	-	254	78777610	-	Suden_1413	-	gamma-glutamyl kinase
1409	 36.49	0	1478945..1480054	-	369	78777611	obgE	Suden_1414	-	GTPase ObgE
1410	 37.60	0	1480187..1480444	-	85	78777612	rpmA	Suden_1415	-	50S ribosomal protein L27
1411	 36.25	0	1480476..1480784	-	102	78777613	rplU	Suden_1416	-	50S ribosomal protein L21
1412	 27.95	-1	1480928..1482154	-	408	78777614	-	Suden_1417	-	glycosyl transferase, group 1
1413	 34.83	0	1482147..1483214	-	355	78777615	-	Suden_1418	-	UDP-N-acetylglucosamine 2-epimerase
1414	 33.33	0	1483211..1484308	-	365	78777616	-	Suden_1419	-	glycosyl transferase, group 1
1415	 32.43	0	1484305..1485522	-	405	78777617	-	Suden_1420	-	O-antigen translocase
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.