IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1234	 33.33	0	1304370..1304921	-	183	78777436	-	Suden_1238	-	thiamine monophosphate synthase
1235	 35.34	0	1305097..1307193	+	698	78777437	-	Suden_1239	-	anaerobic ribonucleoside triphosphate reductase
1236	 30.07	-1	1307443..1308024	+	193	78777438	-	Suden_1240	-	putative radical-activating enzyme
1237	 35.27	0	1308070..1309773	+	567	78777439	-	Suden_1241	-	ferredoxin--nitrite reductase
1238	 30.41	-1	1309760..1310443	-	227	78777440	-	Suden_1242	-	two component transcriptional regulator
1239	 32.92	0	1310427..1311638	-	403	78777441	-	Suden_1243	-	PAS/PAC sensor signal transduction histidine kinase
1240	 34.88	0	1311643..1314351	-	902	78777442	-	Suden_1244	-	DNA polymerase I
1241	 36.24	0	1314464..1315150	-	228	78777443	-	Suden_1245	-	hypothetical protein
1242	 33.73	0	1315180..1315689	-	169	78777444	-	Suden_1246	-	hypothetical protein
1243	 35.01	0	1315959..1316795	-	278	78777445	-	Suden_1247	-	Phage integrase
1244	 32.19	0	1316798..1317757	-	319	78777446	-	Suden_1248	-	hypothetical protein
1245	 30.95	-1	1317798..1318385	-	195	78777447	-	Suden_1249	-	hypothetical protein
1246	 30.24	-1	1318513..1318803	+	96	78777448	gatC	Suden_1250	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1247	 35.27	0	1318864..1319946	+	360	78777449	-	Suden_1251	-	pilus retraction protein PilT
1248	 31.69	0	1319975..1320946	-	323	78777450	-	Suden_1252	-	hypothetical protein
1249	 30.39	-1	1320954..1322177	-	407	78777451	-	Suden_1253	-	hypothetical protein
1250	 35.78	0	1322134..1323318	-	394	78777452	-	Suden_1254	-	acetylornithine aminotransferase
1251	 34.95	0	1323315..1325048	-	577	78777453	-	Suden_1255	-	molybdopterin oxidoreductase
1252	 29.57	-1	1325041..1325838	-	265	78777454	-	Suden_1256	-	hypothetical protein
1253	 33.44	0	1325963..1326913	+	316	78777455	-	Suden_1257	-	response regulator receiver (CheY-like) modulated CheW protein
1254	 37.31	0	1326951..1328282	-	443	78777456	-	Suden_1258	-	pyruvate carboxylase/oxaloacetate decarboxylase biotin carboxyl carrier subunit alpha
1255	 38.02	+1	1328287..1330098	-	603	78777457	-	Suden_1259	-	pyruvate carboxylase/oxaloacetate decarboxylase beta subunit
1256	 34.58	0	1330107..1330346	-	79	78777458	-	Suden_1260	-	pyruvate carboxylase/oxaloacetate decarboxylase gamma subunit
1257	 27.84	-2	1330499..1330789	+	96	78777459	-	Suden_1261	-	hypothetical protein
1258	 29.45	-1	1330854..1331162	+	102	78777460	-	Suden_1262	-	hypothetical protein
1259	 24.26	-2	1331333..1331839	-	168	78777461	-	Suden_1263	-	hypothetical protein
1260	 32.59	0	1331939..1333831	-	630	78777462	-	Suden_1264	-	heat shock protein 90
1261	 32.37	0	1334110..1334937	+	275	78777463	-	Suden_1265	-	hypothetical protein
1262	 35.49	0	1334950..1335273	+	107	78777464	-	Suden_1266	-	hypothetical protein
1263	 33.48	0	1335270..1336667	-	465	78777465	-	Suden_1267	-	RNA-metabolising metallo-beta-lactamase
1264	 35.03	0	1336856..1338796	+	646	78777466	-	Suden_1268	-	ABC transporter-related protein
1265	 38.59	+1	1338813..1340162	-	449	78777467	-	Suden_1269	-	3-deoxy-7-phosphoheptulonate synthase
1266	 30.83	-1	1340288..1341244	+	318	78777468	-	Suden_1270	-	diguanylate cyclase
1267	 30.11	-1	1341244..1341894	+	216	78777469	-	Suden_1271	-	colicin V production protein
1268	 32.49	0	1341896..1342372	+	158	78777470	-	Suden_1272	-	ferric uptake regulator family protein
1269	 33.60	0	1342393..1343907	+	504	78777471	lysS	Suden_1273	-	lysyl-tRNA synthetase
1270	 37.74	0	1343910..1345157	+	415	78777472	glyA	Suden_1274	-	serine hydroxymethyltransferase
1271	 32.60	0	1345167..1345709	+	180	78777473	-	Suden_1275	-	hypothetical protein
1272	 33.63	0	1345781..1346464	+	227	78777474	-	Suden_1276	-	hypothetical protein
1273	 34.54	0	1346510..1347913	+	467	78777475	-	Suden_1277	-	anthranilate synthase
1274	 38.01	+1	1347996..1348787	+	263	78777476	aroE	Suden_1278	-	shikimate 5-dehydrogenase
1275	 36.37	0	1348784..1349803	-	339	78777477	-	Suden_1279	-	aldo/keto reductase
1276	 34.46	0	1349827..1352496	-	889	78777478	-	Suden_1280	-	glycosyl transferase family protein
1277	 30.96	-1	1352560..1355046	-	828	78777479	-	Suden_1281	-	resistance-nodulation-cell division family transporter
1278	 32.09	0	1355053..1355616	-	187	78777480	-	Suden_1282	-	toluene tolerance
1279	 33.85	0	1355658..1356437	-	259	78777481	-	Suden_1283	-	VacJ-like lipoprotein
1280	 32.63	0	1356439..1357008	-	189	78777482	recR	Suden_1284	-	recombination protein RecR
1281	 33.76	0	1357013..1358173	-	386	78777483	-	Suden_1285	-	MltA
1282	 36.90	0	1358273..1359394	+	373	78777484	-	Suden_1286	-	chaperone DnaJ
1283	 37.50	0	1359664..1360143	-	159	78777485	-	Suden_1287	-	rhodanese-like protein
1284	 29.87	-1	1360240..1360614	+	124	78777486	-	Suden_1288	-	ArsR family transcriptional regulator
1285	 34.01	0	1360659..1361249	+	196	78777487	-	Suden_1289	-	hypothetical protein
1286	 33.87	0	1361246..1362544	-	432	78777488	-	Suden_1290	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1287	 27.59	-2	1362541..1362888	-	115	78777489	-	Suden_1291	-	hypothetical protein
1288	 30.12	-1	1363055..1364518	+	487	78777490	-	Suden_1292	-	hypothetical protein
1289	 36.78	0	1364520..1365881	+	453	78777491	-	Suden_1293	-	cell division protein FtsA
1290	 37.89	+1	1365892..1367010	+	372	78777492	-	Suden_1294	-	cell division protein FtsZ
1291	 30.77	-1	1367081..1367509	+	142	78777493	-	Suden_1295	-	hypothetical protein
1292	 29.22	-1	1367525..1368181	+	218	78777494	-	Suden_1296	-	CRP/FNR family transcriptional regulator
1293	 25.11	-2	1368185..1369120	+	311	78777495	-	Suden_1297	-	hypothetical protein
1294	 35.99	0	1369244..1371841	+	865	78777496	-	Suden_1298	-	nitrous-oxide reductase
1295	 34.48	0	1372029..1372811	+	260	78777497	-	Suden_1299	-	hypothetical protein
1296	 32.27	0	1372814..1374031	+	405	78777498	-	Suden_1300	-	periplasmic copper-binding
1297	 37.11	0	1374035..1374775	+	246	78777499	-	Suden_1301	-	4Fe-4S ferredoxin, iron-sulfur binding
1298	 30.88	-1	1374786..1375397	+	203	78777500	-	Suden_1302	-	hypothetical protein
1299	 35.73	0	1375400..1375900	+	166	78777501	-	Suden_1303	-	hypothetical protein
1300	 33.33	0	1375915..1376820	+	301	78777502	-	Suden_1304	-	NapH/MauN family ferredoxin-type protein
1301	 35.37	0	1376824..1377462	+	212	78777503	-	Suden_1305	-	ABC transporter-related protein
1302	 30.89	-1	1377449..1377898	+	149	78777504	-	Suden_1306	-	hypothetical protein
1303	 32.37	0	1377910..1378737	+	275	78777505	-	Suden_1307	-	putative ABC-2 type transport system permease protein
1304	 33.55	0	1378749..1379219	+	156	78777506	-	Suden_1308	-	hypothetical protein
1305	 32.27	0	1379412..1379882	+	156	78777507	-	Suden_1309	-	hypothetical protein
1306	 36.59	0	1379921..1381273	-	450	78777508	-	Suden_1310	-	hypothetical protein
1307	 33.69	0	1381506..1382630	-	374	78777509	-	Suden_1311	-	hypothetical protein
1308	 27.94	-1	1382715..1383344	-	209	78777510	-	Suden_1312	-	CRP/FNR family transcriptional regulator
1309	 32.64	0	1383341..1383772	-	143	78777511	-	Suden_1313	-	hypothetical protein
1310	 31.22	0	1383782..1384729	-	315	78777512	-	Suden_1314	-	hypothetical protein
1311	 36.17	0	1384729..1385397	-	222	78777513	-	Suden_1315	-	ABC transporter-related protein
1312	 33.50	0	1385397..1386626	-	409	78777514	-	Suden_1316	-	hypothetical protein
1313	 33.06	0	1386842..1387936	-	364	78777515	-	Suden_1317	-	hypothetical protein
1314	 32.08	0	1387968..1388447	-	159	78777516	-	Suden_1318	-	hypothetical protein
1315	 35.62	0	1388451..1389281	-	276	78777517	-	Suden_1319	-	modification methylase HemK
1316	 35.41	0	1389263..1390564	-	433	78777518	-	Suden_1320	-	Ste24 endopeptidase
1317	 36.88	0	1390622..1391383	+	253	78777519	-	Suden_1321	-	patatin
1318	 36.48	0	1391436..1391753	+	105	78777520	-	Suden_1322	-	hypothetical protein
1319	 39.39	+1	1391814..1393250	+	478	78777521	-	Suden_1323	-	catalase
1320	 31.96	0	1393331..1393621	-	96	78777522	-	Suden_1324	-	hypothetical protein
1321	 36.90	0	1393874..1395217	-	447	78777523	-	Suden_1325	-	Sodium/sulphate symporter
1322	 37.08	0	1395264..1396730	-	488	78777524	-	Suden_1326	-	Sodium/proline symporter
1323	 35.39	0	1396731..1400279	-	1182	78777525	-	Suden_1327	-	delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase
1324	 31.09	-1	1400561..1402255	+	564	78777526	-	Suden_1328	-	diguanylate cyclase
1325	 36.02	0	1402363..1402734	+	123	78777527	-	Suden_1329	-	hypothetical protein
1326	 37.93	+1	1402740..1403630	-	296	78777528	gpsA	Suden_1330	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1327	 30.19	-1	1403623..1404321	-	232	78777529	-	Suden_1331	-	TrkA-N
1328	 29.99	-1	1404321..1405874	-	517	78777530	-	Suden_1332	-	TrkA-N:Ion transport protein
1329	 36.98	0	1405880..1407304	-	474	78777531	gatB	Suden_1333	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1330	 33.16	0	1407426..1408604	+	392	78777532	-	Suden_1334	-	hypothetical protein
1331	 29.04	-1	1408618..1409013	+	131	78777533	-	Suden_1335	-	hypothetical protein
1332	 31.59	0	1409000..1410319	+	439	78777534	-	Suden_1336	-	diguanylate cyclase
1333	 34.09	0	1410346..1410741	-	131	78777535	-	Suden_1337	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.