IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1198	 33.44	0	1268189..1269169	-	326	78777400	-	Suden_1202	-	hypothetical protein
1199	 38.18	+1	1269409..1269903	-	164	78777401	-	Suden_1203	-	histidine triad (HIT) protein
1200	 36.92	0	1270025..1271308	-	427	78777402	-	Suden_1204	-	TRAP dicarboxylate transporter, DctM subunit
1201	 33.95	0	1271305..1271790	-	161	78777403	-	Suden_1205	-	tripartite ATP-independent periplasmic transporter DctQ
1202	 32.43	0	1271796..1273241	-	481	78777404	-	Suden_1206	-	cytoplasmic peptidoglycan synthetases-like
1203	 34.28	0	1273241..1273978	-	245	78777405	-	Suden_1207	-	Alpha/beta hydrolase fold
1204	 34.68	0	1273978..1275015	-	345	78777406	ddl	Suden_1208	-	D-alanyl-alanine synthetase A
1205	 38.45	+1	1275028..1275594	-	188	78777407	ruvA	Suden_1209	-	Holliday junction DNA helicase motor protein
1206	 32.65	0	1275591..1277495	-	634	78777408	-	Suden_1210	-	hypothetical protein
1207	 32.48	0	1277601..1279007	+	468	78777409	-	Suden_1211	-	virulence factor MVIN-like
1208	 36.69	0	1278994..1280394	+	466	78777410	cysS	Suden_1212	-	cysteinyl-tRNA synthetase
1209	 36.26	0	1280399..1281595	-	398	78777411	-	Suden_1213	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1210	 34.73	0	1281673..1282602	+	309	78777412	-	Suden_1214	-	hypothetical protein
1211	 39.96	+1	1282568..1283125	-	185	78777413	-	Suden_1215	-	DJ-1
1212	 32.84	0	1283375..1284181	+	268	78777414	-	Suden_1216	-	UbiA prenyltransferase
1213	 30.51	-1	1284178..1284567	+	129	78777415	-	Suden_1217	-	hypothetical protein
1214	 36.74	0	1284570..1285862	+	430	78777416	-	Suden_1218	-	FAD linked oxidase-like
1215	 36.20	0	1285859..1286590	+	243	78777417	-	Suden_1219	-	short chain dehydrogenase
1216	 30.41	-1	1286587..1288059	+	490	78777418	-	Suden_1220	-	glycosyltransferase
1217	 36.79	0	1288056..1288634	+	192	78777419	-	Suden_1221	-	phosphoserine phosphatase
1218	 33.46	0	1288776..1289564	+	262	78777420	-	Suden_1222	-	Alpha/beta hydrolase fold
1219	 37.26	0	1289588..1291753	+	721	78777421	-	Suden_1223	-	heavy metal translocating P-type ATPase
1220	 36.26	0	1292006..1293064	+	352	78777422	-	Suden_1224	-	dihydroorotate dehydrogenase 2
1221	 33.02	0	1293066..1294361	+	431	78777423	-	Suden_1225	-	peptidase M16-like
1222	 37.70	0	1294366..1295259	+	297	78777424	-	Suden_1226	-	dihydrodipicolinate synthase
1223	 40.10	+1	1295261..1296043	+	260	78777425	-	Suden_1227	-	7-alpha-hydroxysteroid dehydrogenase
1224	 29.15	-1	1296087..1296995	+	302	78777426	hemD	Suden_1228	-	uroporphyrinogen-III synthase
1225	 31.65	0	1297065..1297598	+	177	78777427	-	Suden_1229	-	hypothetical protein
1226	 29.30	-1	1297595..1297867	-	90	78777428	-	Suden_1230	-	heat shock protein DnaJ-like
1227	 34.24	0	1297864..1298637	-	257	78777429	-	Suden_1231	-	glycerophosphoryl diester phosphodiesterase
1228	 33.50	0	1298641..1299849	-	402	78777430	-	Suden_1232	-	phospholipid/glycerol acyltransferase
1229	 36.58	0	1299950..1300504	+	184	78777431	-	Suden_1233	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1230	 37.99	+1	1300501..1301553	+	350	78777432	-	Suden_1234	-	peptidase M50, putative membrane-associated zinc metallopeptidase
1231	 33.93	0	1301557..1302231	+	224	78777433	-	Suden_1235	-	hypothetical protein
1232	 36.23	0	1302249..1303007	-	252	78777434	-	Suden_1236	-	carbonate dehydratase
1233	 38.01	+1	1303139..1304377	+	412	78777435	-	Suden_1237	-	HI0933-like protein
1234	 33.33	0	1304370..1304921	-	183	78777436	-	Suden_1238	-	thiamine monophosphate synthase
1235	 35.34	0	1305097..1307193	+	698	78777437	-	Suden_1239	-	anaerobic ribonucleoside triphosphate reductase
1236	 30.07	-1	1307443..1308024	+	193	78777438	-	Suden_1240	-	putative radical-activating enzyme
1237	 35.27	0	1308070..1309773	+	567	78777439	-	Suden_1241	-	ferredoxin--nitrite reductase
1238	 30.41	-1	1309760..1310443	-	227	78777440	-	Suden_1242	-	two component transcriptional regulator
1239	 32.92	0	1310427..1311638	-	403	78777441	-	Suden_1243	-	PAS/PAC sensor signal transduction histidine kinase
1240	 34.88	0	1311643..1314351	-	902	78777442	-	Suden_1244	-	DNA polymerase I
1241	 36.24	0	1314464..1315150	-	228	78777443	-	Suden_1245	-	hypothetical protein
1242	 33.73	0	1315180..1315689	-	169	78777444	-	Suden_1246	-	hypothetical protein
1243	 35.01	0	1315959..1316795	-	278	78777445	-	Suden_1247	-	Phage integrase
1244	 32.19	0	1316798..1317757	-	319	78777446	-	Suden_1248	-	hypothetical protein
1245	 30.95	-1	1317798..1318385	-	195	78777447	-	Suden_1249	-	hypothetical protein
1246	 30.24	-1	1318513..1318803	+	96	78777448	gatC	Suden_1250	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1247	 35.27	0	1318864..1319946	+	360	78777449	-	Suden_1251	-	pilus retraction protein PilT
1248	 31.69	0	1319975..1320946	-	323	78777450	-	Suden_1252	-	hypothetical protein
1249	 30.39	-1	1320954..1322177	-	407	78777451	-	Suden_1253	-	hypothetical protein
1250	 35.78	0	1322134..1323318	-	394	78777452	-	Suden_1254	-	acetylornithine aminotransferase
1251	 34.95	0	1323315..1325048	-	577	78777453	-	Suden_1255	-	molybdopterin oxidoreductase
1252	 29.57	-1	1325041..1325838	-	265	78777454	-	Suden_1256	-	hypothetical protein
1253	 33.44	0	1325963..1326913	+	316	78777455	-	Suden_1257	-	response regulator receiver (CheY-like) modulated CheW protein
1254	 37.31	0	1326951..1328282	-	443	78777456	-	Suden_1258	-	pyruvate carboxylase/oxaloacetate decarboxylase biotin carboxyl carrier subunit alpha
1255	 38.02	+1	1328287..1330098	-	603	78777457	-	Suden_1259	-	pyruvate carboxylase/oxaloacetate decarboxylase beta subunit
1256	 34.58	0	1330107..1330346	-	79	78777458	-	Suden_1260	-	pyruvate carboxylase/oxaloacetate decarboxylase gamma subunit
1257	 27.84	-2	1330499..1330789	+	96	78777459	-	Suden_1261	-	hypothetical protein
1258	 29.45	-1	1330854..1331162	+	102	78777460	-	Suden_1262	-	hypothetical protein
1259	 24.26	-2	1331333..1331839	-	168	78777461	-	Suden_1263	-	hypothetical protein
1260	 32.59	0	1331939..1333831	-	630	78777462	-	Suden_1264	-	heat shock protein 90
1261	 32.37	0	1334110..1334937	+	275	78777463	-	Suden_1265	-	hypothetical protein
1262	 35.49	0	1334950..1335273	+	107	78777464	-	Suden_1266	-	hypothetical protein
1263	 33.48	0	1335270..1336667	-	465	78777465	-	Suden_1267	-	RNA-metabolising metallo-beta-lactamase
1264	 35.03	0	1336856..1338796	+	646	78777466	-	Suden_1268	-	ABC transporter-related protein
1265	 38.59	+1	1338813..1340162	-	449	78777467	-	Suden_1269	-	3-deoxy-7-phosphoheptulonate synthase
1266	 30.83	-1	1340288..1341244	+	318	78777468	-	Suden_1270	-	diguanylate cyclase
1267	 30.11	-1	1341244..1341894	+	216	78777469	-	Suden_1271	-	colicin V production protein
1268	 32.49	0	1341896..1342372	+	158	78777470	-	Suden_1272	-	ferric uptake regulator family protein
1269	 33.60	0	1342393..1343907	+	504	78777471	lysS	Suden_1273	-	lysyl-tRNA synthetase
1270	 37.74	0	1343910..1345157	+	415	78777472	glyA	Suden_1274	-	serine hydroxymethyltransferase
1271	 32.60	0	1345167..1345709	+	180	78777473	-	Suden_1275	-	hypothetical protein
1272	 33.63	0	1345781..1346464	+	227	78777474	-	Suden_1276	-	hypothetical protein
1273	 34.54	0	1346510..1347913	+	467	78777475	-	Suden_1277	-	anthranilate synthase
1274	 38.01	+1	1347996..1348787	+	263	78777476	aroE	Suden_1278	-	shikimate 5-dehydrogenase
1275	 36.37	0	1348784..1349803	-	339	78777477	-	Suden_1279	-	aldo/keto reductase
1276	 34.46	0	1349827..1352496	-	889	78777478	-	Suden_1280	-	glycosyl transferase family protein
1277	 30.96	-1	1352560..1355046	-	828	78777479	-	Suden_1281	-	resistance-nodulation-cell division family transporter
1278	 32.09	0	1355053..1355616	-	187	78777480	-	Suden_1282	-	toluene tolerance
1279	 33.85	0	1355658..1356437	-	259	78777481	-	Suden_1283	-	VacJ-like lipoprotein
1280	 32.63	0	1356439..1357008	-	189	78777482	recR	Suden_1284	-	recombination protein RecR
1281	 33.76	0	1357013..1358173	-	386	78777483	-	Suden_1285	-	MltA
1282	 36.90	0	1358273..1359394	+	373	78777484	-	Suden_1286	-	chaperone DnaJ
1283	 37.50	0	1359664..1360143	-	159	78777485	-	Suden_1287	-	rhodanese-like protein
1284	 29.87	-1	1360240..1360614	+	124	78777486	-	Suden_1288	-	ArsR family transcriptional regulator
1285	 34.01	0	1360659..1361249	+	196	78777487	-	Suden_1289	-	hypothetical protein
1286	 33.87	0	1361246..1362544	-	432	78777488	-	Suden_1290	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1287	 27.59	-2	1362541..1362888	-	115	78777489	-	Suden_1291	-	hypothetical protein
1288	 30.12	-1	1363055..1364518	+	487	78777490	-	Suden_1292	-	hypothetical protein
1289	 36.78	0	1364520..1365881	+	453	78777491	-	Suden_1293	-	cell division protein FtsA
1290	 37.89	+1	1365892..1367010	+	372	78777492	-	Suden_1294	-	cell division protein FtsZ
1291	 30.77	-1	1367081..1367509	+	142	78777493	-	Suden_1295	-	hypothetical protein
1292	 29.22	-1	1367525..1368181	+	218	78777494	-	Suden_1296	-	CRP/FNR family transcriptional regulator
1293	 25.11	-2	1368185..1369120	+	311	78777495	-	Suden_1297	-	hypothetical protein
1294	 35.99	0	1369244..1371841	+	865	78777496	-	Suden_1298	-	nitrous-oxide reductase
1295	 34.48	0	1372029..1372811	+	260	78777497	-	Suden_1299	-	hypothetical protein
1296	 32.27	0	1372814..1374031	+	405	78777498	-	Suden_1300	-	periplasmic copper-binding
1297	 37.11	0	1374035..1374775	+	246	78777499	-	Suden_1301	-	4Fe-4S ferredoxin, iron-sulfur binding
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.