IslandPathversion 1.0

IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.46 STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1098	 35.12	0	1159222..1159725	-	167	78777300	-	Suden_1102	-	3-isopropylmalate dehydratase, small subunit
1099	 38.28	+1	1159873..1160661	-	262	78777301	flgG	Suden_1103	-	flagellar basal body rod protein FlgG
1100	 35.62	0	1160674..1161504	-	276	78777302	-	Suden_1104	-	flagellar basal body rod protein
1101	 34.62	0	1161640..1163511	+	623	78777303	-	Suden_1105	-	RNA polymerase sigma factor RpoD
1102	 29.39	-1	1163523..1164206	+	227	78777304	-	Suden_1106	-	hypothetical protein
1103	 28.28	-1	1164190..1164684	-	164	78777305	-	Suden_1107	-	hypothetical protein
1104	 33.95	0	1164692..1165015	-	107	78777306	-	Suden_1108	-	hypothetical protein
1105	 40.76	+1	1165008..1166300	-	430	78777307	-	Suden_1109	-	glutamate-1-semialdehyde aminotransferase
1106	 33.21	0	1166448..1167278	+	276	78777308	-	Suden_1110	-	hypothetical protein
1107	 35.05	0	1167287..1168219	-	310	78777309	-	Suden_1111	-	HpcH/HpaI aldolase
1108	 32.73	0	1168216..1168548	-	110	78777310	-	Suden_1112	-	hypothetical protein
1109	 37.06	0	1168608..1169465	+	285	78777311	-	Suden_1113	-	methenyltetrahydrofolate cyclohydrolase
1110	 36.30	0	1169462..1170271	+	269	78777312	-	Suden_1114	-	peptidase S26A, signal peptidase I
1111	 34.50	0	1170252..1170935	+	227	78777313	-	Suden_1115	-	peptidase M50
1112	 39.04	+1	1170949..1171386	+	145	78777314	-	Suden_1116	-	ribose-5-phosphate isomerase B
1113	 29.43	-1	1171410..1171742	+	110	78777315	-	Suden_1117	-	hypothetical protein
1114	 33.70	0	1171753..1172301	+	182	78777316	-	Suden_1118	-	adenine phosphoribosyltransferase
1115	 38.58	+1	1172301..1173500	+	399	78777317	-	Suden_1119	-	tryptophan synthase subunit beta
1116	 37.01	0	1173510..1174925	+	471	78777318	-	Suden_1120	-	leucyl aminopeptidase
1117	 31.41	0	1174933..1175451	+	172	78777319	-	Suden_1121	-	ribonuclease H
1118	 37.42	0	1175531..1176631	+	366	78777320	-	Suden_1122	-	translation-associated GTPase
1119	 29.54	-1	1176719..1177588	+	289	78777321	flgA	Suden_1123	-	flagellar basal body P-ring biosynthesis protein FlgA
1120	 37.31	0	1177585..1178112	+	175	78777322	-	Suden_1124	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1121	 35.93	0	1178103..1178603	+	166	78777323	coaD	Suden_1125	-	phosphopantetheine adenylyltransferase
1122	 33.33	0	1178588..1179163	+	191	78777324	tdk	Suden_1126	-	thymidylate kinase
1123	 35.68	0	1179256..1179810	+	184	78777325	-	Suden_1127	-	HPP
1124	 32.78	0	1179807..1180709	-	300	78777326	-	Suden_1128	-	hypothetical protein
1125	 37.76	+1	1180759..1181436	-	225	78777327	-	Suden_1129	-	superoxide dismutase
1126	 36.80	0	1181585..1182796	+	403	78777328	hisS	Suden_1130	-	histidyl-tRNA synthetase
1127	 33.28	0	1182799..1184526	+	575	78777329	-	Suden_1131	-	ferredoxin-dependent glutamate synthase
1128	 34.92	0	1184536..1186365	+	609	78777330	-	Suden_1132	-	arginine decarboxylase
1129	 35.61	0	1186375..1187076	+	233	78777331	-	Suden_1133	-	Serine O-acetyltransferase
1130	 37.29	0	1187124..1188287	+	387	78777332	-	Suden_1134	-	aspartate aminotransferase
1131	 30.93	-1	1188284..1190863	-	859	78777333	-	Suden_1135	-	hypothetical protein
1132	 31.50	0	1190923..1192617	-	564	78777334	-	Suden_1136	-	surface antigen (D15)
1133	 34.31	0	1192641..1192844	-	67	78777335	-	Suden_1137	-	hypothetical protein
1134	 36.89	0	1192855..1193811	-	318	78777336	-	Suden_1138	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD
1135	 35.65	0	1193820..1194770	-	316	78777337	-	Suden_1139	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD
1136	 37.95	+1	1194775..1195251	-	158	78777338	ilvH	Suden_1140	-	acetolactate synthase 3 regulatory subunit
1137	 38.57	+1	1195251..1196948	-	565	78777339	-	Suden_1141	-	acetolactate synthase 3 catalytic subunit
1138	 30.70	-1	1197050..1199173	-	707	78777340	-	Suden_1142	-	WD-40 repeat-containing protein
1139	 39.32	+1	1199176..1200378	-	400	78777341	-	Suden_1143	-	threonine dehydratase
1140	 36.83	0	1200388..1200816	-	142	78777342	-	Suden_1144	-	CoA-binding
1141	 36.30	0	1200883..1202331	-	482	78777343	-	Suden_1145	-	Sodium/sulphate symporter
1142	 33.49	0	1202556..1203203	+	215	78777344	-	Suden_1146	-	superfamily II DNA/RNA helicase-like
1143	 36.06	0	1203215..1203985	-	256	78777345	-	Suden_1147	-	hypothetical protein
1144	 34.91	0	1203954..1205222	-	422	78777346	-	Suden_1148	-	RNA polymerase factor sigma-54
1145	 38.59	+1	1205238..1205960	-	240	78777347	-	Suden_1149	-	ABC transporter-related protein
1146	 31.16	-1	1205948..1206361	-	137	78777348	-	Suden_1150	-	hypothetical protein
1147	 36.47	0	1206358..1207344	-	328	78777349	-	Suden_1151	-	anthranilate phosphoribosyl transferase
1148	 29.32	-1	1207341..1207589	-	82	78777350	-	Suden_1152	-	RNA-binding S4
1149	 25.84	-2	1207736..1208242	+	168	78777351	-	Suden_1153	-	flagellar basal body-associated protein FliL
1150	 32.56	0	1208298..1210868	+	856	78777352	-	Suden_1154	-	diguanylate cyclase/phosphodiesterase
1151	 35.95	0	1210904..1211821	-	305	78777353	-	Suden_1155	-	putative manganese-dependent inorganic pyrophosphatase
1152	 34.54	0	1211967..1213292	+	441	78777354	-	Suden_1156	-	phospholipase D/transphosphatidylase
1153	 33.33	0	1213305..1214036	+	243	78777355	-	Suden_1157	-	hypothetical protein
1154	 33.49	0	1214033..1214662	-	209	78777356	-	Suden_1158	-	nitroreductase
1155	 38.33	+1	1214732..1215631	+	299	78777357	-	Suden_1159	-	auxin efflux carrier
1156	 34.00	0	1215642..1216088	+	148	78777358	-	Suden_1160	-	SecC motif-containing protein
1157	 36.62	0	1216085..1217179	-	364	78777359	-	Suden_1161	-	tRNA 2-selenouridine synthase
1158	 39.92	+1	1217179..1218210	-	343	78777360	-	Suden_1162	-	selenide water dikinase
1159	 36.69	0	1218234..1221062	-	942	78777361	uvrA	Suden_1163	-	excinuclease ABC subunit A
1160	 34.01	0	1221069..1221809	-	246	78777362	-	Suden_1164	-	hypothetical protein
1161	 33.81	0	1221942..1222364	+	140	78777363	-	Suden_1165	-	hypothetical protein
1162	 33.93	0	1222365..1222700	+	111	78777364	-	Suden_1166	-	flagellar motor switch protein
1163	 32.43	0	1222700..1223587	+	295	78777365	-	Suden_1167	-	hypothetical protein
1164	 30.87	-1	1223584..1224720	-	378	78777366	-	Suden_1168	-	hypothetical protein
1165	 36.47	0	1224714..1225670	-	318	78777367	-	Suden_1169	-	dihydrouridine synthase TIM-barrel protein nifR3
1166	 29.50	-1	1225677..1226693	-	338	78777368	-	Suden_1170	-	hypothetical protein
1167	 35.90	0	1226703..1227053	-	116	78777369	-	Suden_1171	-	TraR/DksA family transcriptional regulator
1168	 30.72	-1	1227070..1227528	-	152	78777370	-	Suden_1172	-	hypothetical protein
1169	 31.73	0	1227528..1228088	-	186	78777371	-	Suden_1173	-	thiamine monophosphate synthase
1170	 37.71	0	1228088..1228933	-	281	78777372	-	Suden_1174	-	acetyl-CoA carboxylase subunit beta
1171	 37.16	0	1229079..1230464	-	461	78777373	gltD	Suden_1175	-	glutamate synthase subunit beta
1172	 36.46	0	1230467..1234906	-	1479	78777374	-	Suden_1176	-	glutamate synthase (NADPH) large subunit
1173	 31.56	0	1235084..1235704	+	206	78777375	-	Suden_1177	-	hypothetical protein
1174	 33.27	0	1235764..1237356	+	530	78777376	-	Suden_1178	-	methyl-accepting chemotaxis sensory transducer
1175	 34.59	0	1237362..1237916	-	184	78777377	-	Suden_1179	-	tellurite resistance protein TehB
1176	 34.64	0	1237927..1239075	-	382	78777378	-	Suden_1180	-	carboxynorspermidine decarboxylase
1177	 37.64	0	1239079..1240263	-	394	78777379	-	Suden_1181	-	saccharopine dehydrogenase
1178	 32.89	0	1240367..1242172	-	601	78777380	-	Suden_1182	-	phospholipid/glycerol acyltransferase
1179	 33.89	0	1242186..1242905	-	239	78777381	-	Suden_1183	-	hypothetical protein
1180	 35.12	0	1243069..1244301	+	410	78777382	-	Suden_1184	-	hypothetical protein
1181	 32.93	0	1244392..1244892	+	166	78777383	-	Suden_1185	-	hypothetical protein
1182	 31.25	0	1244934..1245365	+	143	78777384	-	Suden_1186	-	hypothetical protein
1183	 30.16	-1	1245349..1245789	+	146	78777385	-	Suden_1187	-	hypothetical protein
1184	 31.80	0	1245769..1246680	-	303	78777386	-	Suden_1188	-	ApbE-like lipoprotein
1185	 35.86	0	1246723..1247751	-	342	78777387	-	Suden_1189	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1186	 33.90	0	1248438..1250543	+	701	78777388	-	Suden_1190	-	ABC transporter-related protein
1187	 33.33	0	1250540..1251814	+	424	78777389	-	Suden_1191	-	Type I secretion membrane fusion protein, HlyD
1188	 29.25	-1	1251957..1252910	+	317	78777390	-	Suden_1192	-	hypothetical protein
1189	 32.42	0	1252925..1254013	+	362	78777391	-	Suden_1193	-	MotA/TolQ/ExbB proton channel
1190	 30.38	-1	1254018..1254728	+	236	78777392	-	Suden_1194	-	hypothetical protein
1191	 31.68	0	1254728..1257502	+	924	78777393	-	Suden_1195	-	Outer membrane efflux protein
1192	 30.64	-1	1257499..1259574	+	691	78777394	-	Suden_1196	-	diguanylate phosphodiesterase
1193	 32.92	0	1259585..1260064	+	159	78777395	-	Suden_1197	-	hypothetical protein
1194	 36.51	0	1260061..1260972	+	303	78777396	-	Suden_1198	-	Sel1 repeat-containing protein
1195	 35.80	0	1260976..1261785	-	269	78777397	-	Suden_1199	-	putative signal transduction protein
1196	 37.02	0	1261963..1267557	-	1864	78777398	-	Suden_1200	-	hemolysin-type calcium-binding region
1197	 30.77	-1	1267764..1268192	-	142	78777399	-	Suden_1201	-	GCN5-related N-acetyltransferase
34.46	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.