IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
65	 40.15	+1	69380..71065	+	561	78776266	-	Suden_0065	-	dihydroxy-acid dehydratase
66	 37.76	+1	71086..72894	+	602	78776267	thrS	Suden_0066	-	threonyl-tRNA synthetase
67	 36.80	0	72891..73409	+	172	78776268	infC	Suden_0067	-	translation initiation factor IF-3
68	 33.33	0	73591..75507	+	638	78776269	-	Suden_0068	-	exo-beta-1 3-glucanase-like
69	 36.61	0	75488..77257	-	589	78776270	-	Suden_0069	-	ABC transporter-related protein
70	 36.75	0	77263..78579	-	438	78776271	-	Suden_0070	-	major facilitator transporter
71	 37.17	0	78689..79288	+	199	78776272	-	Suden_0071	-	Ham1-like protein
72	 31.91	0	79420..80190	-	256	78776273	-	Suden_0072	-	undecaprenol kinase
73	 39.71	+1	80317..81429	+	370	78776274	-	Suden_0073	-	aminotransferase, class V
74	 31.68	0	81430..82278	+	282	78776275	hisZ	Suden_0074	-	ATP phosphoribosyltransferase regulatory subunit
75	 37.78	+1	82325..83584	+	419	78776276	-	Suden_0075	-	adenylosuccinate synthetase
76	 38.13	+1	83666..84040	+	124	78776277	-	Suden_0076	-	hypothetical protein
77	 33.33	0	84037..84549	+	170	78776278	-	Suden_0077	-	PDP protein
78	 31.30	0	84610..86481	+	623	78776279	-	Suden_0078	-	diguanylate cyclase/phosphodiesterase
79	 31.88	0	86546..87097	+	183	78776280	-	Suden_0079	-	hypothetical protein
80	 33.60	0	87099..88244	+	381	78776281	-	Suden_0080	-	carbamoyl phosphate synthase small subunit
81	 38.69	+1	88469..89962	+	497	78776282	-	Suden_0081	-	cytochrome c oxidase cbb3-type, subunit I
82	 37.81	+1	89978..90670	+	230	78776283	-	Suden_0082	-	cbb3-type cytochrome c oxidase subunit II
83	 36.76	0	90680..90883	+	67	78776284	-	Suden_0083	-	cbb3-type cytochrome c oxidase subunit IV
84	 36.15	0	90893..91816	+	307	78776285	-	Suden_0084	-	Cbb3-type cytochrome c oxidase subunit III
85	 34.29	0	91827..92036	+	69	78776286	-	Suden_0085	-	hypothetical protein
86	 31.77	0	92144..92848	+	234	78776287	-	Suden_0086	-	3-dehydroquinate dehydratase
87	 34.91	0	92835..93341	+	168	78776288	-	Suden_0087	-	hypothetical protein
88	 32.99	0	93356..95701	+	781	78776289	-	Suden_0088	-	hypothetical protein
89	 35.04	0	95702..95935	+	77	78776290	-	Suden_0089	-	hypothetical protein
90	 35.69	0	95937..98648	+	903	78776291	-	Suden_0090	-	UvrD/REP helicase
91	 33.92	0	98700..99212	+	170	78776292	-	Suden_0091	-	NLP/P60
92	 33.81	0	99332..99754	+	140	78776293	rplM	Suden_0092	-	50S ribosomal protein L13
93	 42.31	+2	99765..100154	+	129	78776294	rpsI	Suden_0093	-	30S ribosomal protein S9
94	 36.41	0	100269..101765	+	498	78776295	-	Suden_0094	-	extracellular solute-binding protein
95	 31.14	-1	101767..102405	+	212	78776296	-	Suden_0095	-	HAD family hydrolase
96	 35.66	0	102533..103090	+	185	78776297	-	Suden_0096	-	pyruvate flavodoxin oxidoreductase subunit gamma
97	 37.37	0	103101..103496	+	131	78776298	porD	Suden_0097	-	pyruvate flavodoxin oxidoreductase subunit delta
98	 39.22	+1	103496..104719	+	407	78776299	porA	Suden_0098	-	pyruvate flavodoxin oxidoreductase subunit alpha
99	 37.93	+1	104730..105686	+	318	78776300	-	Suden_0099	-	pyruvate flavodoxin oxidoreductase subunit beta
100	 38.27	+1	106659..106982	+	107	78776301	-	Suden_0100	-	nitrate transporter
101	 32.43	0	107076..107408	+	110	78776302	-	Suden_0101	-	nitrate transporter
102	 38.98	+1	107403..107579	-	58	78776303	-	Suden_0102	-	molybdopterin oxidoreductase Fe4S4 region
103	 35.86	0	107741..108334	+	197	78776304	-	Suden_0103	-	hypothetical protein
104	 41.82	+2	108331..109968	+	545	78776305	-	Suden_0104	-	cytochrome c oxidase, subunit I
105	 30.82	-1	109984..110580	+	198	78776306	-	Suden_0105	-	hypothetical protein
106	 31.64	0	110736..113744	-	1002	78776307	-	Suden_0106	-	diguanylate cyclase/phosphodiesterase
107	 39.07	+1	113806..114816	-	336	78776308	-	Suden_0107	-	hypothetical protein
108	 32.53	0	114848..115723	-	291	78776309	-	Suden_0108	-	MscS mechanosensitive ion channel
109	 33.50	0	115738..116967	-	409	78776310	-	Suden_0109	-	hypothetical protein
110	 35.38	0	117004..117540	-	178	78776311	-	Suden_0110	-	phosphoglycerate/bisphosphoglycerate mutase
111	 36.10	0	117537..118259	-	240	78776312	-	Suden_0111	-	cobalamin-5-phosphate synthase CobS
112	 36.35	0	118256..118753	-	165	78776313	-	Suden_0112	-	adenosylcobinamide kinase
113	 32.63	0	118825..119253	-	142	78776314	-	Suden_0113	-	hypothetical protein
114	 37.99	+1	119250..120860	-	536	78776315	-	Suden_0114	-	hypothetical protein
115	 36.55	0	120857..121819	-	320	78776316	-	Suden_0115	-	transport system permease protein
116	 33.88	0	121812..122537	-	241	78776317	-	Suden_0116	-	ABC transporter-related protein
117	 36.29	0	122534..123346	-	270	78776318	-	Suden_0117	-	periplasmic binding protein
118	 35.54	0	123356..125257	-	633	78776319	-	Suden_0118	-	TonB-dependent receptor
119	 37.72	0	125282..125623	-	113	78776320	-	Suden_0119	-	hypothetical protein
120	 33.33	0	125970..126179	+	69	78776321	-	Suden_0120	-	hypothetical protein
121	 32.74	0	126182..127369	+	395	78776322	-	Suden_0121	-	DNA (cytosine-5-)-methyltransferase
122	 30.44	-1	127369..128406	+	345	78776323	-	Suden_0122	-	hypothetical protein
123	 35.07	0	128614..129939	+	441	78776324	-	Suden_0123	-	hypothetical protein
124	 40.45	+1	130000..130308	+	102	78776325	-	Suden_0124	-	hypothetical protein
125	 40.34	+1	130346..131101	+	251	78776326	-	Suden_0125	-	phosphatidate cytidylyltransferase
126	 38.42	+1	131105..132166	+	353	78776327	-	Suden_0126	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
127	 38.46	+1	132163..132357	+	64	78776328	-	Suden_0127	-	hypothetical protein
128	 31.15	-1	132509..133609	+	366	78776329	-	Suden_0128	-	Type II site-specific deoxyribonuclease
129	 26.22	-2	133609..135210	+	533	78776330	-	Suden_0129	-	N-6 DNA methylase
130	 35.41	0	135212..136222	+	336	78776331	-	Suden_0130	-	site-specific DNA-methyltransferase (adenine-specific)
131	 38.75	+1	136219..137196	+	325	78776332	-	Suden_0131	-	O-sialoglycoprotein endopeptidase
132	 38.10	+1	137315..137818	+	167	78776333	-	Suden_0132	-	thiol peroxidase
133	 37.18	0	137994..138746	+	250	78776334	-	Suden_0133	-	hypothetical protein
134	 36.05	0	138753..139304	-	183	78776335	-	Suden_0134	-	GCN5-related N-acetyltransferase
135	 39.11	+1	139311..141284	-	657	78776336	-	Suden_0135	-	competence protein ComEA helix-hairpin-helix region
136	 35.85	0	141403..142317	-	304	78776337	-	Suden_0136	-	hypothetical protein
137	 33.70	0	142395..143744	+	449	78776338	-	Suden_0137	-	hypothetical protein
138	 38.10	+1	143741..143992	+	83	78776339	-	Suden_0138	-	FlhB domain-containing protein
139	 36.00	0	143998..144222	-	74	78776340	-	Suden_0139	-	hypothetical protein
140	 37.58	0	144244..145467	-	407	78776341	-	Suden_0140	-	hypothetical protein
141	 37.70	0	145563..146936	+	457	78776342	-	Suden_0141	-	ATP-dependent RNA helicase DbpA
142	 35.50	0	146975..147436	+	153	78776343	-	Suden_0142	-	putative metal-dependent hydrolase
143	 36.98	0	147440..149275	-	611	78776344	-	Suden_0143	-	ABC transporter-related protein
144	 38.79	+1	149292..149822	-	176	78776345	-	Suden_0144	-	hypothetical protein
145	 39.52	+1	149819..151207	-	462	78776346	gltX	Suden_0145	-	glutamyl-tRNA synthetase
146	 35.84	0	151299..152135	+	278	78776347	-	Suden_0146	-	hypothetical protein
147	 34.70	0	152136..152573	+	145	78776348	-	Suden_0147	-	CMP/dCMP deaminase, zinc-binding
148	 38.64	+1	152577..153122	+	181	78776349	-	Suden_0148	-	hypothetical protein
149	 33.05	0	153119..153472	-	117	78776350	-	Suden_0149	-	arsenate reductase
150	 33.99	0	153538..153993	+	151	78776351	-	Suden_0150	-	hypothetical protein
151	 31.47	0	153990..154418	-	142	78776352	-	Suden_0151	-	CDP-alcohol phosphatidyltransferase
152	 34.07	0	154426..154830	-	134	78776353	-	Suden_0152	-	BadM/Rrf2 family transcriptional regulator
153	 31.15	-1	155049..155507	+	152	78776354	-	Suden_0153	-	hypothetical protein
154	 41.02	+1	155504..156427	+	307	78776355	-	Suden_0154	-	cysteine synthase K/M/A
155	 34.20	0	156433..156663	+	76	78776356	-	Suden_0155	-	hypothetical protein
156	 36.68	0	156676..157392	+	238	78776357	-	Suden_0156	-	phosphoadenosine phosphosulfate reductase CysH-type
157	 39.47	+1	157386..158297	+	303	78776358	-	Suden_0157	-	sulfate adenylyltransferase subunit 2
158	 36.38	0	158299..159711	+	470	78776359	-	Suden_0158	-	Sulfate adenylyltransferase, large subunit
159	 35.71	0	159721..161280	+	519	78776360	-	Suden_0159	-	ferredoxin--nitrite reductase
160	 36.95	0	161273..162601	+	442	78776361	-	Suden_0160	-	putative aminotransferase
161	 33.33	0	162700..163581	+	293	78776362	-	Suden_0161	-	hypothetical protein
162	 36.58	0	163617..164294	+	225	78776363	-	Suden_0162	-	carbonate dehydratase
163	 35.77	0	164289..166094	-	601	78776364	-	Suden_0163	-	asparagine synthase, glutamine-hydrolyzing
164	 36.05	0	166094..166681	-	195	78776365	-	Suden_0164	-	hypothetical protein
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.