IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.26   STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
930	 34.81	0	951452..951856	-	134	71903597	spxA	M28_Spy0932	-	transcriptional regulator Spx
931	 34.08	-1	951899..952831	-	310	71903598	mreA	M28_Spy0933	-	bifunctional riboflavin kinase/FMN adenylyltransferase
932	 41.24	0	952860..953744	-	294	71903599	truB	M28_Spy0934	-	tRNA pseudouridine synthase B
933	 38.78	0	953860..955200	-	446	71903600	-	M28_Spy0935	-	hypothetical protein
934	 36.68	0	955297..956253	-	318	71903601	-	M28_Spy0936	-	integral membrane protein
935	 39.53	0	956264..956860	-	198	71903602	-	M28_Spy0937	-	type I restriction-modification system specificity subunit
936	 39.14	0	956952..959588	-	878	71903603	-	M28_Spy0938	-	ABC transporter permease protein
937	 40.76	0	959603..960316	-	237	71903604	-	M28_Spy0939	-	ABC transporter ATP-binding protein
938	 36.65	0	960422..960964	+	180	71903605	-	M28_Spy0940	-	TetR family transcriptional regulator
939	 35.42	0	960961..961104	-	47	71903606	-	M28_Spy0941	-	hypothetical protein
940	 34.89	0	961107..961748	-	213	71903607	-	M28_Spy0942	-	NAD-dependent K+ or Na+ uptake system component
941	 34.35	0	961911..962402	-	163	71903608	-	M28_Spy0943	-	Gls24 family general stress protein
942	 31.34	-1	962410..962610	-	66	71903609	-	M28_Spy0944	-	hypothetical protein
943	 33.89	-1	962651..963190	-	179	71903610	-	M28_Spy0945	-	Gls24 family general stress protein
944	 31.75	-1	963203..963391	-	62	71903611	-	M28_Spy0946	-	hypothetical protein
945	 33.82	-1	963402..964013	-	203	71903612	-	M28_Spy0947	-	hypothetical protein
946	 43.37	+1	964050..964298	-	82	71903613	-	M28_Spy0948	-	integral membrane protein
947	 41.10	0	964661..966979	-	772	71903614	pcrA	M28_Spy0949	-	DNA helicase II
948	 35.67	0	967347..967517	-	56	71903616	-	M28_Spy0951	-	hypothetical protein
949	 42.86	+1	967508..968830	+	440	71903615	-	M28_Spy0950	-	Na(+)-linked D-alanine glycine permease
950	 36.17	0	968950..970185	+	411	71903617	-	M28_Spy0952	-	cobalt-zinc-cadmium resistance protein czcD
951	 35.92	0	970555..971328	-	257	71903618	cfa	M28_Spy0953	-	cAMP factor
952	 33.21	-1	971698..972534	-	278	71903619	-	M28_Spy0954	-	histidine-binding protein
953	 39.37	0	972550..973179	-	209	71903620	-	M28_Spy0955	-	histidine transport ATP-binding protein P
954	 35.98	0	973189..973830	-	213	71903621	-	M28_Spy0956	-	histidine transport system permease protein M
955	 38.39	0	973937..974272	-	111	71903622	-	M28_Spy0957	-	PhnA
956	 41.32	0	974468..976282	-	604	71903623	glmS	M28_Spy0958	-	D-fructose-6-phosphate amidotransferase
957	 33.33	-1	976458..977015	-	185	71903624	sipC	M28_Spy0959	-	signal peptidase I
958	 40.25	0	977233..978735	-	500	71903625	pyk	M28_Spy0960	-	pyruvate kinase
959	 43.29	+1	978798..979811	-	337	71903626	pfkA	M28_Spy0961	-	6-phosphofructokinase
960	 37.77	0	979891..983001	-	1036	71903627	dnaE	M28_Spy0962	-	DNA polymerase III DnaE
961	 35.71	0	983096..983557	+	153	71903628	-	M28_Spy0963	-	GntR family transcriptional regulator
962	 35.19	0	983557..984255	+	232	71903629	-	M28_Spy0964	-	ABC transporter ATP-binding protein
963	 31.30	-1	984265..985050	+	261	71903630	-	M28_Spy0965	-	ABC transporter permease protein
964	 32.68	-1	985177..985791	-	204	71903631	-	M28_Spy0966	-	putative membrane-associated alkaline phosphatase
965	 41.27	0	986382..986570	-	62	71903632	-	M28_Spy0967	-	phage protein
966	 36.50	0	986810..987568	+	252	71903633	spd1	M28_Spy0968	-	streptococcal phage DNase1
967	 28.53	-2	987679..988386	+	235	71903634	speC	M28_Spy0969	-	exotoxin type C precursor
968	 38.28	0	988462..989796	-	444	71903635	-	M28_Spy0970	-	phage-associated lysin
969	 38.17	0	989908..990093	-	61	71903636	-	M28_Spy0971	-	phage protein
970	 37.71	0	990090..990386	-	98	71903637	-	M28_Spy0972	-	phage protein
971	 43.53	+1	990397..991014	-	205	71903638	-	M28_Spy0973	-	phage protein
972	 32.10	-1	991017..991178	-	53	71903639	-	M28_Spy0974	-	phage protein
973	 42.35	+1	991192..993087	-	631	71903640	-	M28_Spy0975	-	phage protein
974	 27.58	-2	993098..993427	-	109	71903641	-	M28_Spy0976	-	phage protein
975	 40.66	0	993414..994628	-	404	71903642	-	M28_Spy0977	-	phage protein
976	 41.12	0	994625..996679	-	684	71903643	-	M28_Spy0978	-	phage protein
977	 35.00	0	996676..997455	-	259	71903644	-	M28_Spy0979	-	phage protein
978	 44.09	+1	997487..1001122	-	1211	71903645	-	M28_Spy0980	-	phage protein
979	 35.19	0	1001137..1001460	-	107	71903646	-	M28_Spy0981	-	phage protein
980	 36.59	0	1001508..1001906	-	132	71903647	-	M28_Spy0982	-	phage protein
981	 37.67	0	1001915..1002583	-	222	71903648	-	M28_Spy0983	-	phage protein
982	 37.69	0	1002593..1002982	-	129	71903649	-	M28_Spy0984	-	phage protein
983	 38.25	0	1002979..1003344	-	121	71903650	-	M28_Spy0985	-	phage protein
984	 39.16	0	1003325..1003633	-	102	71903651	-	M28_Spy0986	-	phage protein
985	 37.98	0	1003630..1003995	-	121	71903652	-	M28_Spy0987	-	phage protein
986	 38.27	0	1003997..1004239	-	80	71903653	-	M28_Spy0988	-	phage protein
987	 39.43	0	1004249..1005331	-	360	71903654	-	M28_Spy0989	-	phage protein
988	 39.90	0	1005334..1005714	-	126	71903655	-	M28_Spy0990	-	phage protein
989	 42.73	+1	1005724..1006266	-	180	71903656	-	M28_Spy0991	-	phage protein
990	 33.33	-1	1006401..1006667	-	88	71903657	-	M28_Spy0992	-	phage protein
991	 39.05	0	1006670..1006984	-	104	71903658	-	M28_Spy0993	-	phage protein
992	 30.65	-1	1007054..1007239	-	61	71903659	-	M28_Spy0994	-	phage protein
993	 37.04	0	1007243..1008805	-	520	71903660	-	M28_Spy0995	-	phage protein
994	 41.85	0	1008786..1010288	-	500	71903661	-	M28_Spy0996	-	portal protein
995	 37.21	0	1010300..1011613	-	437	71903662	-	M28_Spy0997	-	terminase large subunit
996	 38.46	0	1011585..1012130	-	181	71903663	-	M28_Spy0998	-	phage terminase small subunit
997	 37.41	0	1012313..1012729	+	138	71903664	-	M28_Spy0999	-	phage protein
998	 28.63	-2	1013347..1014261	-	304	71903665	-	M28_Spy1000	-	phage protein
999	 42.79	+1	1014312..1014533	-	73	71903666	-	M28_Spy1001	-	phage protein
1000	 40.69	0	1014839..1015273	-	144	71903667	-	M28_Spy1002	-	ArpU family phage encoded transcriptional regulator
1001	 32.53	-1	1015722..1016216	-	164	71903668	-	M28_Spy1003	-	phage protein
1002	 37.48	0	1016206..1016904	-	232	71903669	-	M28_Spy1004	-	phage protein
1003	 40.00	0	1016840..1017124	-	94	71903670	-	M28_Spy1005	-	phage protein
1004	 37.95	0	1017121..1017315	-	64	71903671	-	M28_Spy1006	-	phage protein
1005	 36.25	0	1017288..1017527	-	79	71903672	-	M28_Spy1007	-	phage protein
1006	 34.96	0	1017524..1017769	-	81	71903673	-	M28_Spy1008	-	phage protein
1007	 37.54	0	1017766..1018122	-	118	71903674	-	M28_Spy1009	-	phage protein
1008	 38.25	0	1018106..1018390	-	94	71903675	-	M28_Spy1010	-	phage protein
1009	 34.13	-1	1018410..1019291	-	293	71903676	-	M28_Spy1011	-	phage protein
1010	 34.43	0	1019548..1021101	-	517	71903677	-	M28_Spy1012	-	phage protein
1011	 38.51	0	1021119..1021601	-	160	71903678	-	M28_Spy1013	-	phage protein
1012	 36.11	0	1021606..1022973	-	455	71903679	-	M28_Spy1014	-	phage DNA/RNA helicase
1013	 38.60	0	1023045..1023728	-	227	71903680	-	M28_Spy1015	-	phage protein
1014	 29.12	-2	1023725..1024009	-	94	71903681	-	M28_Spy1016	-	phage protein
1015	 31.28	-1	1024006..1024200	-	64	71903682	-	M28_Spy1017	-	phage protein
1016	 32.12	-1	1024200..1024529	-	109	71903683	-	M28_Spy1018	-	phage protein
1017	 36.96	0	1024610..1024747	-	45	71903684	-	M28_Spy1019	-	phage protein
1018	 37.37	0	1024744..1025040	-	98	71903685	-	M28_Spy1020	-	phage protein
1019	 32.85	-1	1025119..1025325	-	68	71903686	-	M28_Spy1021	-	phage protein
1020	 34.17	-1	1025471..1025710	+	79	71903687	-	M28_Spy1022	-	phage protein
1021	 32.38	-1	1025860..1026069	+	69	71903688	-	M28_Spy1023	-	phage protein
1022	 30.32	-1	1026274..1026837	+	187	71903689	-	M28_Spy1024	-	phage protein
1023	 28.07	-2	1026945..1027172	-	75	71903691	-	M28_Spy1026	-	phage protein
1024	 33.53	-1	1027135..1027632	+	165	71903690	-	M28_Spy1025	-	phage protein
1025	 35.24	0	1027621..1027830	-	69	71903692	-	M28_Spy1027	-	phage protein
1026	 31.67	-1	1027884..1028483	+	199	71903693	-	M28_Spy1028	-	phage protein
1027	 38.99	0	1028513..1028671	-	52	71903694	-	M28_Spy1029	-	phage protein
1028	 35.89	0	1029438..1030181	+	247	71903695	-	M28_Spy1030	-	phage transcriptional repressor
1029	 34.57	0	1030194..1031003	+	269	71903696	-	M28_Spy1031	-	phage protein
38.26	MEAN

3.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.