IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS6180



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.26 STD DEV: 3.98
Streptococcus pyogenes MGAS6180, complete genome - 1..1897573
1894 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
877	 42.45	+1	894715..895602	+	295	71903544	citE	M28_Spy0879	-	citrate lyase beta chain
878	 42.79	+1	895605..897137	+	510	71903545	citF	M28_Spy0880	-	citrate CoA-transferase
879	 41.28	0	897067..897708	+	213	71903546	citX	M28_Spy0881	-	2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase
880	 42.82	+1	897705..899117	+	470	71903547	oadA1	M28_Spy0882	-	oxaloacetate decarboxylase
881	 38.46	0	899227..900279	-	350	71903548	citC	M28_Spy0883	-	[citrate [pro-3S]-lyase] ligase
882	 36.44	0	900368..900850	-	160	71903549	-	M28_Spy0884	-	hypothetical protein
883	 37.40	0	901549..902655	-	368	71903550	xerS	M28_Spy0885	-	site-specific tyrosine recombinase XerS
884	 32.62	-1	903089..903787	+	232	71903551	-	M28_Spy0886	-	phage transcriptional repressor
885	 40.54	0	903922..905490	-	522	71903552	ffh	M28_Spy0887	-	signal recognition particle, subunit FFH/SRP54
886	 33.04	-1	905499..905840	-	113	71903553	ylxM	M28_Spy0888	-	hypothetical protein
887	 39.26	0	905929..906654	-	241	71903554	-	M28_Spy0889	-	GntR family transcriptional regulator
888	 35.15	0	906710..908143	-	477	71903555	-	M28_Spy0890	-	hypothetical protein
889	 40.75	0	908310..909872	+	520	71903556	guaA	M28_Spy0891	-	bifunctional GMP synthase/glutamine amidotransferase protein
890	 35.21	0	909914..911137	-	407	71903557	-	M28_Spy0892	-	UDP-N-acetylmuramoylpentapeptide-lysine N(6)-alanyltransferase
891	 36.81	0	911504..913084	-	526	71903558	-	M28_Spy0893	-	ABC transporter ATP-binding protein
892	 33.15	-1	913182..913739	-	185	71903559	pdxK	M28_Spy0894	-	hypothetical protein
893	 33.91	-1	913717..914583	-	288	71903560	-	M28_Spy0895	-	pyridoxamine kinase
894	 33.49	-1	914673..915941	+	422	71903561	-	M28_Spy0896	-	aminotransferase class-I
895	 35.85	0	916349..916705	-	118	71903562	rnhB	M28_Spy0897	-	anaerobic ribonucleoside-triphosphate reductase
896	 33.71	-1	917027..918604	-	525	71903563	-	M28_Spy0898	-	cardiolipin synthetase
897	 42.91	+1	918689..920359	-	556	71903564	fhs.1	M28_Spy0899	-	formate--tetrahydrofolate ligase
898	 38.73	0	920487..921506	-	339	71903565	lplA	M28_Spy0900	-	lipoate-protein ligase A
899	 40.36	0	921553..922434	-	293	71903566	-	M28_Spy0901	-	SIR2 family protein
900	 40.71	0	922427..923239	-	270	71903567	-	M28_Spy0902	-	hypothetical protein
901	 40.24	0	923232..923564	-	110	71903568	-	M28_Spy0903	-	glycine cleavage system H protein
902	 39.34	0	923606..924604	-	332	71903569	-	M28_Spy0904	-	luciferase-like monooxygenase
903	 40.67	0	924601..925800	-	399	71903570	-	M28_Spy0905	-	NADH-dependent flavin oxidoreductase yqiG
904	 39.67	0	925797..926648	-	283	71903571	-	M28_Spy0906	-	lipoate-protein ligase A
905	 36.51	0	926829..927521	+	230	71903572	dpfB	M28_Spy0907	-	phosphopantothenate--cysteine ligase
906	 35.90	0	927514..928059	+	181	71903573	dfp	M28_Spy0908	-	phosphopantothenoylcysteine decarboxylase
907	 33.16	-1	928105..928686	+	193	71903574	-	M28_Spy0909	-	transporter
908	 37.93	0	928861..930579	+	572	71903575	pgmA	M28_Spy0910	-	phosphoglucomutase
909	 38.60	0	930797..931765	-	322	71903576	-	M28_Spy0911	-	nucleoside transport system permease protein
910	 37.64	0	931755..932846	-	363	71903577	-	M28_Spy0912	-	nucleoside transport system permease protein
911	 37.40	0	932812..934362	-	516	71903578	-	M28_Spy0913	-	nucleoside transport ATP-binding protein
912	 38.65	0	934483..935535	-	350	71903579	-	M28_Spy0914	-	nucleoside-binding protein
913	 35.90	0	935629..936018	-	129	71903580	cdd	M28_Spy0915	-	cytidine deaminase
914	 33.01	-1	936669..937295	-	208	71903581	-	M28_Spy0916	-	16S rRNA m(2)G 1207 methyltransferase
915	 31.81	-1	937530..938450	+	306	71903582	coaA	M28_Spy0917	-	pantothenate kinase
916	 39.74	0	938519..938752	+	77	162139400	rpsT	M28_Spy0918	-	30S ribosomal protein S20
917	 31.50	-1	938877..940187	-	436	71903584	ciaH	M28_Spy0919	-	sensor protein
918	 31.85	-1	940180..940854	-	224	71903585	ciaR	M28_Spy0920	-	transcriptional regulatory protein
919	 36.53	0	941201..943798	-	865	71903586	pepN	M28_Spy0921	-	alanine aminopeptidase
920	 30.95	-1	943795..944004	-	69	71903587	-	M28_Spy0922	-	hypothetical protein
921	 35.32	0	943943..944596	-	217	71903588	phoU	M28_Spy0923	-	phosphate transport system protein
922	 39.11	0	944664..945425	-	253	71903589	pstB	M28_Spy0924	-	phosphate transport ATP-binding protein
923	 39.30	0	945435..946238	-	267	71903590	pstB2	M28_Spy0925	-	phosphate transport ATP-binding protein
924	 40.54	0	946254..947141	-	295	71903591	pstA	M28_Spy0926	-	phosphate transport system permease protein
925	 42.87	+1	947131..947979	-	282	71903592	pstC	M28_Spy0927	-	phosphate transport system permease protein
926	 38.29	0	948076..948942	-	288	71903593	pstS	M28_Spy0928	-	phosphate-binding protein
927	 40.66	0	949081..950391	-	436	71903594	-	M28_Spy0929	-	16S rRNA m(5)C 967 methyltransferase
928	 39.26	0	950394..951203	-	269	71903595	-	M28_Spy0930	-	myo-inositol-1(or 4)-monophosphatase
929	 33.33	-1	951172..951462	-	96	71903596	-	M28_Spy0931	-	hypothetical protein
930	 34.81	0	951452..951856	-	134	71903597	spxA	M28_Spy0932	-	transcriptional regulator Spx
931	 34.08	-1	951899..952831	-	310	71903598	mreA	M28_Spy0933	-	bifunctional riboflavin kinase/FMN adenylyltransferase
932	 41.24	0	952860..953744	-	294	71903599	truB	M28_Spy0934	-	tRNA pseudouridine synthase B
933	 38.78	0	953860..955200	-	446	71903600	-	M28_Spy0935	-	hypothetical protein
934	 36.68	0	955297..956253	-	318	71903601	-	M28_Spy0936	-	integral membrane protein
935	 39.53	0	956264..956860	-	198	71903602	-	M28_Spy0937	-	type I restriction-modification system specificity subunit
936	 39.14	0	956952..959588	-	878	71903603	-	M28_Spy0938	-	ABC transporter permease protein
937	 40.76	0	959603..960316	-	237	71903604	-	M28_Spy0939	-	ABC transporter ATP-binding protein
938	 36.65	0	960422..960964	+	180	71903605	-	M28_Spy0940	-	TetR family transcriptional regulator
939	 35.42	0	960961..961104	-	47	71903606	-	M28_Spy0941	-	hypothetical protein
940	 34.89	0	961107..961748	-	213	71903607	-	M28_Spy0942	-	NAD-dependent K+ or Na+ uptake system component
941	 34.35	0	961911..962402	-	163	71903608	-	M28_Spy0943	-	Gls24 family general stress protein
942	 31.34	-1	962410..962610	-	66	71903609	-	M28_Spy0944	-	hypothetical protein
943	 33.89	-1	962651..963190	-	179	71903610	-	M28_Spy0945	-	Gls24 family general stress protein
944	 31.75	-1	963203..963391	-	62	71903611	-	M28_Spy0946	-	hypothetical protein
945	 33.82	-1	963402..964013	-	203	71903612	-	M28_Spy0947	-	hypothetical protein
946	 43.37	+1	964050..964298	-	82	71903613	-	M28_Spy0948	-	integral membrane protein
947	 41.10	0	964661..966979	-	772	71903614	pcrA	M28_Spy0949	-	DNA helicase II
948	 35.67	0	967347..967517	-	56	71903616	-	M28_Spy0951	-	hypothetical protein
949	 42.86	+1	967508..968830	+	440	71903615	-	M28_Spy0950	-	Na(+)-linked D-alanine glycine permease
950	 36.17	0	968950..970185	+	411	71903617	-	M28_Spy0952	-	cobalt-zinc-cadmium resistance protein czcD
951	 35.92	0	970555..971328	-	257	71903618	cfa	M28_Spy0953	-	cAMP factor
952	 33.21	-1	971698..972534	-	278	71903619	-	M28_Spy0954	-	histidine-binding protein
953	 39.37	0	972550..973179	-	209	71903620	-	M28_Spy0955	-	histidine transport ATP-binding protein P
954	 35.98	0	973189..973830	-	213	71903621	-	M28_Spy0956	-	histidine transport system permease protein M
955	 38.39	0	973937..974272	-	111	71903622	-	M28_Spy0957	-	PhnA
956	 41.32	0	974468..976282	-	604	71903623	glmS	M28_Spy0958	-	D-fructose-6-phosphate amidotransferase
957	 33.33	-1	976458..977015	-	185	71903624	sipC	M28_Spy0959	-	signal peptidase I
958	 40.25	0	977233..978735	-	500	71903625	pyk	M28_Spy0960	-	pyruvate kinase
959	 43.29	+1	978798..979811	-	337	71903626	pfkA	M28_Spy0961	-	6-phosphofructokinase
960	 37.77	0	979891..983001	-	1036	71903627	dnaE	M28_Spy0962	-	DNA polymerase III DnaE
961	 35.71	0	983096..983557	+	153	71903628	-	M28_Spy0963	-	GntR family transcriptional regulator
962	 35.19	0	983557..984255	+	232	71903629	-	M28_Spy0964	-	ABC transporter ATP-binding protein
963	 31.30	-1	984265..985050	+	261	71903630	-	M28_Spy0965	-	ABC transporter permease protein
964	 32.68	-1	985177..985791	-	204	71903631	-	M28_Spy0966	-	putative membrane-associated alkaline phosphatase
965	 41.27	0	986382..986570	-	62	71903632	-	M28_Spy0967	-	phage protein
966	 36.50	0	986810..987568	+	252	71903633	spd1	M28_Spy0968	-	streptococcal phage DNase1
967	 28.53	-2	987679..988386	+	235	71903634	speC	M28_Spy0969	-	exotoxin type C precursor
968	 38.28	0	988462..989796	-	444	71903635	-	M28_Spy0970	-	phage-associated lysin
969	 38.17	0	989908..990093	-	61	71903636	-	M28_Spy0971	-	phage protein
970	 37.71	0	990090..990386	-	98	71903637	-	M28_Spy0972	-	phage protein
971	 43.53	+1	990397..991014	-	205	71903638	-	M28_Spy0973	-	phage protein
972	 32.10	-1	991017..991178	-	53	71903639	-	M28_Spy0974	-	phage protein
973	 42.35	+1	991192..993087	-	631	71903640	-	M28_Spy0975	-	phage protein
974	 27.58	-2	993098..993427	-	109	71903641	-	M28_Spy0976	-	phage protein
975	 40.66	0	993414..994628	-	404	71903642	-	M28_Spy0977	-	phage protein
976	 41.12	0	994625..996679	-	684	71903643	-	M28_Spy0978	-	phage protein
38.26	MEAN

3.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.